Wall clock time and date at job start Mon Mar 30 2020 04:48:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53001 * 112.85153 * 2 1 4 4 C 1.53789 * 113.61038 * 131.19655 * 2 1 3 5 5 C 1.53780 * 87.07893 * 89.11518 * 4 2 1 6 6 C 1.53006 * 113.61053 * 139.97929 * 5 4 2 7 7 N 1.46902 * 109.46626 * 176.52548 * 6 5 4 8 8 C 1.46905 * 110.99800 * 180.02562 * 7 6 5 9 9 C 1.50698 * 109.47194 * 180.02562 * 8 7 6 10 10 O 1.21276 * 119.99771 * 0.02562 * 9 8 7 11 11 N 1.34774 * 119.99867 * 180.02562 * 9 8 7 12 12 C 1.46498 * 120.00193 * 180.02562 * 11 9 8 13 13 C 1.50695 * 109.47527 * 179.97438 * 12 11 9 14 14 H 1.08002 * 120.00027 * 0.02562 * 13 12 11 15 15 C 1.37873 * 120.00148 * 179.97438 * 13 12 11 16 16 N 1.31513 * 120.00237 * 180.02562 * 15 13 12 17 17 Si 1.86800 * 120.00140 * 0.02562 * 15 13 12 18 18 H 1.48500 * 109.47305 * 89.99368 * 17 15 13 19 19 H 1.48502 * 109.47123 * 209.99838 * 17 15 13 20 20 H 1.48504 * 109.46868 * 329.99660 * 17 15 13 21 21 C 1.53777 * 87.17394 * 25.38935 * 5 4 2 22 22 H 1.09007 * 109.47013 * 288.80594 * 1 2 3 23 23 H 1.08998 * 109.47014 * 48.80014 * 1 2 3 24 24 H 1.08998 * 109.47348 * 168.80291 * 1 2 3 25 25 H 1.08999 * 109.46898 * 191.19448 * 3 2 1 26 26 H 1.08997 * 109.47016 * 311.19487 * 3 2 1 27 27 H 1.08996 * 109.46824 * 71.19568 * 3 2 1 28 28 H 1.08992 * 113.61445 * 334.56320 * 4 2 1 29 29 H 1.09001 * 113.61082 * 203.66197 * 4 2 1 30 30 H 1.08998 * 113.61602 * 270.79563 * 5 4 2 31 31 H 1.08993 * 109.46955 * 296.52894 * 6 5 4 32 32 H 1.09000 * 109.47050 * 56.52723 * 6 5 4 33 33 H 1.00898 * 110.99915 * 56.05185 * 7 6 5 34 34 H 1.09002 * 109.47091 * 300.00139 * 8 7 6 35 35 H 1.09001 * 109.46854 * 60.00166 * 8 7 6 36 36 H 0.96999 * 120.00108 * 0.02562 * 11 9 8 37 37 H 1.09002 * 109.46687 * 299.99760 * 12 11 9 38 38 H 1.08996 * 109.47194 * 59.99071 * 12 11 9 39 39 H 0.97002 * 120.00326 * 180.02562 * 16 15 13 40 40 H 1.08999 * 113.61825 * 89.16304 * 21 5 4 41 41 H 1.09009 * 113.61337 * 220.05752 * 21 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1242 1.4099 0.0000 4 6 2.1460 -0.9281 1.0603 5 6 2.0929 -2.0426 0.0020 6 6 3.3264 -2.9479 0.0029 7 7 3.1444 -4.0242 -0.9801 8 6 4.3117 -4.9158 -1.0066 9 6 4.0893 -6.0044 -2.0247 10 8 3.0600 -6.0343 -2.6654 11 7 5.0342 -6.9446 -2.2231 12 6 4.8183 -8.0026 -3.2132 13 6 6.0157 -8.9172 -3.2404 14 1 6.8536 -8.7295 -2.5853 15 6 6.0411 -9.9943 -4.1007 16 7 7.0858 -10.7928 -4.1241 17 14 4.5916 -10.3195 -5.2332 18 1 4.7975 -9.6047 -6.5185 19 1 4.4815 -11.7780 -5.4900 20 1 3.3434 -9.8343 -4.5914 21 6 2.1448 -0.9318 -1.0601 22 1 -0.3633 0.3313 0.9729 23 1 -0.3633 0.6769 -0.7732 24 1 -0.3634 -1.0081 -0.1995 25 1 3.1943 1.3532 -0.1995 26 1 1.6416 2.0076 -0.7733 27 1 1.9600 1.8733 0.9728 28 1 1.4945 -1.1068 1.9156 29 1 3.1590 -0.6487 1.3496 30 1 1.1573 -2.6019 0.0035 31 1 4.2073 -2.3618 -0.2587 32 1 3.4590 -3.3802 0.9947 33 1 2.9553 -3.6482 -1.8971 34 1 5.1998 -4.3436 -1.2751 35 1 4.4507 -5.3617 -0.0218 36 1 5.8573 -6.9209 -1.7104 37 1 3.9298 -8.5746 -2.9458 38 1 4.6802 -7.5561 -4.1979 39 1 7.1039 -11.5504 -4.7296 40 1 3.1575 -0.6534 -1.3517 41 1 1.4923 -1.1135 -1.9143 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000701994649.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:48:42 Heat of formation + Delta-G solvation = -57.484853 kcal Electronic energy + Delta-G solvation = -18295.880973 eV Core-core repulsion = 15402.629366 eV Total energy + Delta-G solvation = -2893.251607 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 254.174 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.83058 -40.40723 -36.66814 -35.99430 -34.40434 -32.20701 -30.36702 -28.30267 -28.15142 -26.62398 -25.23470 -23.65218 -21.69410 -21.31767 -19.17451 -19.13006 -17.88242 -17.19247 -17.01735 -16.26515 -16.12440 -15.58056 -15.35410 -15.23378 -14.80081 -14.68587 -14.35550 -14.27430 -13.81770 -13.57925 -13.37619 -13.08850 -12.98745 -12.76022 -12.67091 -12.65438 -12.23529 -11.94075 -11.66770 -11.60775 -11.40123 -10.92958 -10.92055 -10.86006 -10.67543 -9.92874 -9.37308 -8.40702 -6.47646 1.32159 1.34586 1.47475 1.74761 2.27448 2.36233 2.94639 3.27916 3.62469 3.75227 3.81803 3.89058 3.99551 4.28487 4.37180 4.44455 4.52760 4.58101 4.73586 4.78462 4.79677 4.83721 4.92507 4.93133 5.00868 5.02718 5.05315 5.06844 5.20735 5.25723 5.30229 5.35533 5.52661 5.59052 5.68871 5.96926 6.11272 6.35844 6.53576 6.87248 7.15548 7.43544 8.73980 Molecular weight = 254.17amu Principal moments of inertia in cm(-1) A = 0.054549 B = 0.003001 C = 0.002918 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 513.177173 B = 9326.986618 C = 9592.911926 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.089 4.089 3 C -0.134 4.134 4 C -0.118 4.118 5 C -0.107 4.107 6 C 0.073 3.927 7 N -0.689 5.689 8 C 0.054 3.946 9 C 0.496 3.504 10 O -0.588 6.588 11 N -0.707 5.707 12 C 0.232 3.768 13 C -0.546 4.546 14 H 0.060 0.940 15 C 0.026 3.974 16 N -0.931 5.931 17 Si 0.938 3.062 18 H -0.265 1.265 19 H -0.273 1.273 20 H -0.262 1.262 21 C -0.133 4.133 22 H 0.063 0.937 23 H 0.058 0.942 24 H 0.050 0.950 25 H 0.056 0.944 26 H 0.054 0.946 27 H 0.061 0.939 28 H 0.070 0.930 29 H 0.089 0.911 30 H 0.083 0.917 31 H 0.042 0.958 32 H 0.078 0.922 33 H 0.344 0.656 34 H 0.083 0.917 35 H 0.119 0.881 36 H 0.409 0.591 37 H 0.010 0.990 38 H 0.010 0.990 39 H 0.272 0.728 40 H 0.081 0.919 41 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.646 23.600 10.821 27.364 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.089 4.089 3 C -0.191 4.191 4 C -0.156 4.156 5 C -0.126 4.126 6 C -0.056 4.056 7 N -0.322 5.322 8 C -0.078 4.078 9 C 0.284 3.716 10 O -0.468 6.468 11 N -0.358 5.358 12 C 0.108 3.892 13 C -0.584 4.584 14 H 0.078 0.922 15 C -0.175 4.175 16 N -0.570 5.570 17 Si 0.762 3.238 18 H -0.189 1.189 19 H -0.198 1.198 20 H -0.186 1.186 21 C -0.171 4.171 22 H 0.083 0.917 23 H 0.077 0.923 24 H 0.069 0.931 25 H 0.075 0.925 26 H 0.073 0.927 27 H 0.080 0.920 28 H 0.089 0.911 29 H 0.107 0.893 30 H 0.102 0.898 31 H 0.060 0.940 32 H 0.097 0.903 33 H 0.163 0.837 34 H 0.100 0.900 35 H 0.137 0.863 36 H 0.245 0.755 37 H 0.028 0.972 38 H 0.028 0.972 39 H 0.082 0.918 40 H 0.100 0.900 41 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -9.634 23.002 10.716 27.143 hybrid contribution 0.677 -0.229 -1.008 1.236 sum -8.957 22.773 9.708 26.326 Atomic orbital electron populations 1.21606 0.93163 1.01703 1.02179 1.21799 0.95655 0.94719 0.96709 1.21714 1.00448 0.94959 1.01961 1.23039 1.01591 0.94693 0.96264 1.22466 0.98305 0.94016 0.97796 1.22031 0.96756 0.90803 0.95963 1.60137 1.38097 1.21292 1.12637 1.21771 0.94006 0.93100 0.98958 1.21381 0.82776 0.83421 0.84066 1.90629 1.28768 1.76530 1.50897 1.46023 1.20956 1.27747 1.41053 1.19066 0.95844 0.86120 0.88130 1.21298 1.02918 1.10947 1.23265 0.92171 1.25607 0.98510 0.95192 0.98157 1.69979 1.31054 1.16853 1.39098 0.85849 0.80161 0.78096 0.79725 1.18944 1.19778 1.18639 1.23228 1.01021 0.96183 0.96637 0.91749 0.92258 0.93059 0.92469 0.92656 0.92024 0.91136 0.89290 0.89829 0.94020 0.90342 0.83733 0.89965 0.86274 0.75519 0.97211 0.97164 0.91833 0.90008 0.92410 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.73 9.07 71.98 0.65 -1.08 16 2 C -0.09 -1.21 1.39 -51.59 -0.07 -1.28 16 3 C -0.13 -1.55 9.20 71.98 0.66 -0.89 16 4 C -0.12 -1.58 6.79 31.12 0.21 -1.37 16 5 C -0.11 -1.82 3.54 -10.27 -0.04 -1.85 16 6 C 0.07 1.32 5.51 86.31 0.48 1.79 16 7 N -0.69 -17.32 6.13 -517.91 -3.17 -20.49 16 8 C 0.05 1.35 6.17 85.56 0.53 1.88 16 9 C 0.50 18.47 7.87 87.66 0.69 19.16 16 10 O -0.59 -26.99 16.20 -3.02 -0.05 -27.03 16 11 N -0.71 -28.20 5.55 -466.81 -2.59 -30.79 16 12 C 0.23 11.54 4.50 85.63 0.38 11.92 16 13 C -0.55 -30.34 9.83 25.60 0.25 -30.09 16 14 H 0.06 3.49 7.84 -2.91 -0.02 3.47 16 15 C 0.03 1.46 5.47 84.65 0.46 1.92 16 16 N -0.93 -55.82 13.96 21.45 0.30 -55.52 16 17 Si 0.94 44.52 27.47 68.60 1.88 46.40 16 18 H -0.26 -12.12 7.11 99.48 0.71 -11.41 16 19 H -0.27 -12.40 7.11 99.48 0.71 -11.69 16 20 H -0.26 -12.43 6.54 99.48 0.65 -11.78 16 21 C -0.13 -2.14 6.76 31.18 0.21 -1.93 16 22 H 0.06 0.75 8.14 -2.38 -0.02 0.73 16 23 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16 24 H 0.05 0.77 7.34 -2.39 -0.02 0.75 16 25 H 0.06 0.64 7.96 -2.39 -0.02 0.62 16 26 H 0.05 0.63 8.14 -2.39 -0.02 0.61 16 27 H 0.06 0.63 8.14 -2.39 -0.02 0.61 16 28 H 0.07 0.91 8.10 -2.39 -0.02 0.89 16 29 H 0.09 1.05 8.06 -2.39 -0.02 1.03 16 30 H 0.08 1.70 7.66 -2.39 -0.02 1.68 16 31 H 0.04 0.66 7.87 -2.39 -0.02 0.65 16 32 H 0.08 1.33 8.14 -2.39 -0.02 1.31 16 33 H 0.34 9.30 8.43 -89.70 -0.76 8.54 16 34 H 0.08 1.66 8.14 -2.39 -0.02 1.64 16 35 H 0.12 2.53 8.14 -2.39 -0.02 2.51 16 36 H 0.41 14.04 8.32 -92.71 -0.77 13.27 16 37 H 0.01 0.52 7.20 -2.39 -0.02 0.51 16 38 H 0.01 0.54 7.57 -2.39 -0.02 0.52 16 39 H 0.27 15.21 8.31 -92.71 -0.77 14.44 16 40 H 0.08 1.25 7.75 -2.39 -0.02 1.23 16 41 H 0.06 1.04 8.10 -2.38 -0.02 1.02 16 Total: -1.00 -67.57 333.65 0.22 -67.35 By element: Atomic # 1 Polarization: 22.47 SS G_CDS: -0.58 Total: 21.89 kcal Atomic # 6 Polarization: -6.22 SS G_CDS: 4.42 Total: -1.80 kcal Atomic # 7 Polarization: -101.34 SS G_CDS: -5.46 Total: -106.81 kcal Atomic # 8 Polarization: -26.99 SS G_CDS: -0.05 Total: -27.03 kcal Atomic # 14 Polarization: 44.52 SS G_CDS: 1.88 Total: 46.40 kcal Total: -67.57 0.22 -67.35 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000701994649.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.866 kcal (2) G-P(sol) polarization free energy of solvation -67.566 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.700 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.215 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.351 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.485 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds