Wall clock time and date at job start Mon Mar 30 2020 03:49:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42904 * 114.00035 * 2 1 4 4 H 1.09001 * 115.54937 * 4.33044 * 3 2 1 5 5 C 1.53074 * 117.51579 * 218.60352 * 3 2 1 6 6 C 1.52997 * 59.98535 * 252.52232 * 5 3 2 7 7 H 1.08997 * 117.50397 * 252.49737 * 6 5 3 8 8 C 1.50709 * 117.49886 * 107.49858 * 6 5 3 9 9 O 1.21275 * 119.99955 * 291.25668 * 8 6 5 10 10 N 1.34780 * 119.99841 * 111.25007 * 8 6 5 11 11 C 1.46961 * 120.59367 * 179.97438 * 10 8 6 12 12 C 1.53361 * 108.77885 * 235.12227 * 11 10 8 13 13 N 1.47040 * 108.59689 * 310.83381 * 12 11 10 14 14 C 1.36930 * 120.45597 * 235.05189 * 13 12 11 15 15 H 1.08003 * 120.00345 * 28.06392 * 14 13 12 16 16 C 1.38815 * 120.00182 * 208.06455 * 14 13 12 17 17 N 1.31621 * 119.99877 * 17.56691 * 16 14 13 18 18 Si 1.86799 * 120.00120 * 197.56374 * 16 14 13 19 19 H 1.48498 * 109.47268 * 90.00038 * 18 16 14 20 20 H 1.48499 * 109.47449 * 210.00125 * 18 16 14 21 21 H 1.48500 * 109.47206 * 330.00009 * 18 16 14 22 22 C 1.46972 * 118.94999 * 54.95219 * 13 12 11 23 23 C 1.46964 * 120.59174 * 359.97438 * 10 8 6 24 24 H 1.09004 * 109.47061 * 60.00139 * 1 2 3 25 25 H 1.08998 * 109.46570 * 179.97438 * 1 2 3 26 26 H 1.08995 * 109.47548 * 300.00244 * 1 2 3 27 27 H 1.08994 * 117.49195 * 145.03577 * 5 3 2 28 28 H 1.09004 * 117.50878 * 0.02562 * 5 3 2 29 29 H 1.08998 * 109.60923 * 354.95922 * 11 10 8 30 30 H 1.09003 * 109.60622 * 115.28760 * 11 10 8 31 31 H 1.09000 * 109.61145 * 70.40680 * 12 11 10 32 32 H 1.09001 * 109.61174 * 190.92005 * 12 11 10 33 33 H 0.97006 * 119.99935 * 180.02562 * 17 16 14 34 34 H 1.09009 * 109.60604 * 185.13071 * 22 13 12 35 35 H 1.08994 * 109.61193 * 64.62214 * 22 13 12 36 36 H 1.08998 * 109.61135 * 244.53676 * 23 10 8 37 37 H 1.08997 * 109.61291 * 4.88256 * 23 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3056 2.1338 0.0743 5 6 3.2671 1.5200 -0.8470 6 6 3.3712 1.4729 0.6787 7 1 3.5620 2.4112 1.1994 8 6 3.9962 0.2483 1.2960 9 8 3.4205 -0.8178 1.2444 10 7 5.1951 0.3380 1.9052 11 6 5.8163 -0.8476 2.5120 12 6 6.1328 -0.5419 3.9811 13 7 6.8391 0.7459 4.0504 14 6 8.0573 0.8370 4.6691 15 1 8.7100 -0.0227 4.7058 16 6 8.4534 2.0343 5.2492 17 7 7.5601 2.9632 5.5167 18 14 10.2542 2.3272 5.6501 19 1 10.9248 2.9570 4.4844 20 1 10.3594 3.2265 6.8271 21 1 10.9101 1.0308 5.9575 22 6 6.2178 1.9316 3.4437 23 6 5.9045 1.6232 1.9746 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3632 -1.0277 -0.0005 26 1 -0.3634 0.5138 0.8899 27 1 3.3889 2.4895 -1.3301 28 1 3.6503 0.6654 -1.4047 29 1 5.1285 -1.6912 2.4538 30 1 6.7375 -1.0896 1.9819 31 1 5.2051 -0.4789 4.5498 32 1 6.7634 -1.3307 4.3913 33 1 7.8370 3.8000 5.9217 34 1 6.9057 2.7752 3.5018 35 1 5.2950 2.1718 3.9717 36 1 6.8336 1.5593 1.4083 37 1 5.2762 2.4108 1.5590 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000709691033.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:49:08 Heat of formation + Delta-G solvation = -10.795079 kcal Electronic energy + Delta-G solvation = -19415.310544 eV Core-core repulsion = 16388.250463 eV Total energy + Delta-G solvation = -3027.060081 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 254.142 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -39.85740 -38.02373 -36.54740 -34.73824 -33.74488 -31.31598 -30.13763 -27.12109 -26.59651 -24.56525 -23.25323 -22.41853 -22.04626 -20.13462 -18.47423 -17.68137 -16.36978 -15.94274 -15.54939 -15.00351 -14.88895 -14.61761 -14.35732 -13.71873 -13.54769 -13.31554 -13.21943 -12.98735 -12.26734 -12.14263 -11.70509 -11.39536 -11.32791 -11.29327 -10.83069 -10.70829 -10.47885 -10.43637 -10.20549 -9.99461 -9.81009 -9.23308 -9.02767 -8.57731 -8.12779 -6.69585 -5.84963 -3.28906 2.92039 3.34583 3.41738 3.42807 3.47820 3.62269 3.95650 4.44985 4.69578 4.82236 4.99887 5.13826 5.26088 5.31642 5.35636 5.40818 5.47043 5.62204 5.64553 5.83971 5.91649 5.95573 6.06081 6.19413 6.27831 6.40054 6.49850 6.82622 6.99384 7.23767 7.27887 7.47485 7.73063 8.04294 8.36624 8.76260 9.13071 9.75651 10.32949 11.22723 Molecular weight = 254.14amu Principal moments of inertia in cm(-1) A = 0.044926 B = 0.004884 C = 0.004681 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 623.093170 B = 5731.412709 C = 5979.961462 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.325 6.325 3 C 0.045 3.955 4 H 0.116 0.884 5 C -0.161 4.161 6 C -0.191 4.191 7 H 0.130 0.870 8 C 0.537 3.463 9 O -0.535 6.535 10 N -0.598 5.598 11 C 0.097 3.903 12 C 0.132 3.868 13 N -0.592 5.592 14 C -0.255 4.255 15 H 0.068 0.932 16 C 0.003 3.997 17 N -0.903 5.903 18 Si 0.904 3.096 19 H -0.287 1.287 20 H -0.291 1.291 21 H -0.279 1.279 22 C 0.157 3.843 23 C 0.082 3.918 24 H 0.038 0.962 25 H 0.086 0.914 26 H 0.041 0.959 27 H 0.109 0.891 28 H 0.103 0.897 29 H 0.081 0.919 30 H 0.060 0.940 31 H 0.023 0.977 32 H 0.066 0.934 33 H 0.255 0.745 34 H 0.100 0.900 35 H 0.022 0.978 36 H 0.061 0.939 37 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.552 -0.140 -11.236 14.748 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.242 6.242 3 C -0.014 4.014 4 H 0.133 0.867 5 C -0.199 4.199 6 C -0.213 4.213 7 H 0.148 0.852 8 C 0.324 3.676 9 O -0.412 6.412 10 N -0.330 5.330 11 C -0.027 4.027 12 C 0.005 3.995 13 N -0.315 5.315 14 C -0.384 4.384 15 H 0.085 0.915 16 C -0.196 4.196 17 N -0.547 5.547 18 Si 0.734 3.266 19 H -0.214 1.214 20 H -0.217 1.217 21 H -0.204 1.204 22 C 0.030 3.970 23 C -0.042 4.042 24 H 0.057 0.943 25 H 0.104 0.896 26 H 0.059 0.941 27 H 0.127 0.873 28 H 0.122 0.878 29 H 0.099 0.901 30 H 0.078 0.922 31 H 0.041 0.959 32 H 0.084 0.916 33 H 0.065 0.935 34 H 0.117 0.883 35 H 0.040 0.960 36 H 0.080 0.920 37 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -9.699 -0.745 -11.143 14.792 hybrid contribution 0.857 0.663 0.368 1.144 sum -8.842 -0.082 -10.774 13.938 Atomic orbital electron populations 1.22807 0.81568 1.02796 0.99527 1.88179 1.18792 1.23651 1.93602 1.22633 0.89038 0.87448 1.02280 0.86688 1.23392 1.01320 1.03828 0.91344 1.22812 1.01636 0.99927 0.96882 0.85243 1.19423 0.80803 0.88797 0.78557 1.90685 1.61884 1.29384 1.59247 1.48000 1.18965 1.10985 1.55096 1.22143 0.97012 0.87502 0.96007 1.21315 0.95849 0.90109 0.92231 1.44001 1.20047 1.03438 1.63992 1.19242 0.91871 0.97970 1.29316 0.91451 1.25056 0.97930 0.98502 0.98080 1.70026 1.31734 1.07880 1.45105 0.86257 0.84934 0.77870 0.77522 1.21377 1.21749 1.20383 1.21184 0.97452 0.91731 0.86601 1.22648 0.95855 0.83808 1.01917 0.94331 0.89588 0.94067 0.87324 0.87835 0.90101 0.92182 0.95912 0.91569 0.93533 0.88252 0.95960 0.92027 0.91002 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.32 10.88 101.05 1.10 1.42 16 2 O -0.33 -4.96 8.84 -57.36 -0.51 -5.47 16 3 C 0.05 0.58 6.41 -26.69 -0.17 0.40 16 4 H 0.12 1.08 7.93 -51.93 -0.41 0.67 16 5 C -0.16 -1.89 10.19 -26.69 -0.27 -2.16 16 6 C -0.19 -2.75 5.10 -91.77 -0.47 -3.22 16 7 H 0.13 1.65 6.60 -51.93 -0.34 1.31 16 8 C 0.54 10.08 7.48 -10.98 -0.08 10.00 16 9 O -0.53 -11.61 14.33 -16.57 -0.24 -11.85 16 10 N -0.60 -11.43 2.95 -172.51 -0.51 -11.94 16 11 C 0.10 1.89 6.59 -3.60 -0.02 1.87 16 12 C 0.13 2.86 6.68 -3.56 -0.02 2.84 16 13 N -0.59 -14.69 2.97 -171.99 -0.51 -15.20 16 14 C -0.25 -6.85 9.57 -15.06 -0.14 -6.99 16 15 H 0.07 1.78 7.89 -52.48 -0.41 1.37 16 16 C 0.00 0.08 4.90 -17.43 -0.09 -0.01 16 17 N -0.90 -25.49 11.20 55.49 0.62 -24.86 16 18 Si 0.90 21.18 29.59 -169.99 -5.03 16.15 16 19 H -0.29 -6.67 7.11 56.52 0.40 -6.26 16 20 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 21 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 22 C 0.16 3.60 5.52 -3.61 -0.02 3.58 16 23 C 0.08 1.51 6.51 -3.61 -0.02 1.49 16 24 H 0.04 0.32 8.14 -51.93 -0.42 -0.10 16 25 H 0.09 0.84 8.14 -51.93 -0.42 0.42 16 26 H 0.04 0.40 8.14 -51.93 -0.42 -0.02 16 27 H 0.11 0.94 8.14 -51.93 -0.42 0.51 16 28 H 0.10 1.35 8.14 -51.93 -0.42 0.92 16 29 H 0.08 1.56 6.99 -51.93 -0.36 1.19 16 30 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 31 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 32 H 0.07 1.36 7.93 -51.93 -0.41 0.95 16 33 H 0.25 6.94 8.31 -40.82 -0.34 6.60 16 34 H 0.10 2.50 5.99 -51.92 -0.31 2.18 16 35 H 0.02 0.55 8.14 -51.93 -0.42 0.12 16 36 H 0.06 1.14 8.14 -51.93 -0.42 0.71 16 37 H 0.07 1.10 5.51 -51.93 -0.29 0.82 16 LS Contribution 301.44 15.07 4.54 4.54 Total: -1.00 -32.42 301.44 -7.32 -39.74 By element: Atomic # 1 Polarization: 5.15 SS G_CDS: -5.48 Total: -0.33 kcal Atomic # 6 Polarization: 9.44 SS G_CDS: -0.21 Total: 9.22 kcal Atomic # 7 Polarization: -51.61 SS G_CDS: -0.40 Total: -52.01 kcal Atomic # 8 Polarization: -16.57 SS G_CDS: -0.74 Total: -17.31 kcal Atomic # 14 Polarization: 21.18 SS G_CDS: -5.03 Total: 16.15 kcal Total LS contribution 4.54 Total: 4.54 kcal Total: -32.42 -7.32 -39.74 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000709691033.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.946 kcal (2) G-P(sol) polarization free energy of solvation -32.417 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.471 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.324 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.741 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.795 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds