Wall clock time and date at job start Mon Mar 30 2020 04:58:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 C 1.53001 * 109.49198 * 2 1 4 4 O 1.42908 * 109.46780 * 60.04193 * 3 2 1 5 5 C 1.53057 * 109.49165 * 120.04280 * 2 1 3 6 6 N 1.46957 * 109.35934 * 61.56681 * 5 2 1 7 7 C 1.46948 * 110.88393 * 59.32231 * 6 5 2 8 8 C 1.53056 * 109.38218 * 300.66889 * 7 6 5 9 9 N 1.46952 * 109.49153 * 239.93427 * 2 1 3 10 10 C 1.46900 * 110.99796 * 63.22091 * 9 2 1 11 11 C 1.53000 * 109.47346 * 184.02342 * 10 9 2 12 12 C 1.50706 * 115.54861 * 305.29357 * 11 10 9 13 13 H 1.07999 * 119.99653 * 0.34178 * 12 11 10 14 14 C 1.37880 * 119.99918 * 180.34534 * 12 11 10 15 15 N 1.31515 * 120.00005 * 0.02562 * 14 12 11 16 16 Si 1.86795 * 119.99765 * 179.97438 * 14 12 11 17 17 H 1.48500 * 109.47342 * 0.02562 * 16 14 12 18 18 H 1.48504 * 109.46942 * 120.00061 * 16 14 12 19 19 H 1.48497 * 109.47251 * 239.99965 * 16 14 12 20 20 C 1.53001 * 117.50352 * 159.62416 * 11 10 9 21 21 C 1.53000 * 117.50103 * 90.96104 * 11 10 9 22 22 H 1.09004 * 109.47326 * 299.95496 * 1 2 3 23 23 H 1.09001 * 109.47307 * 59.95315 * 1 2 3 24 24 H 1.08999 * 109.47247 * 179.97438 * 1 2 3 25 25 H 1.09000 * 109.47633 * 180.02562 * 3 2 1 26 26 H 1.09000 * 109.47268 * 300.04957 * 3 2 1 27 27 H 0.96705 * 113.99840 * 180.02562 * 4 3 2 28 28 H 1.08998 * 109.48608 * 301.59959 * 5 2 1 29 29 H 1.08993 * 109.48884 * 181.53381 * 5 2 1 30 30 H 1.00906 * 110.99578 * 183.19456 * 6 5 2 31 31 H 1.09000 * 109.48858 * 60.64709 * 7 6 5 32 32 H 1.09003 * 109.49259 * 180.68799 * 7 6 5 33 33 H 1.09007 * 109.48637 * 178.37982 * 8 7 6 34 34 H 1.09003 * 109.48504 * 298.44211 * 8 7 6 35 35 H 1.08998 * 109.47220 * 304.02257 * 10 9 2 36 36 H 1.09002 * 109.47218 * 64.02088 * 10 9 2 37 37 H 0.96998 * 119.99415 * 180.02562 * 15 14 12 38 38 H 1.09002 * 117.49453 * 359.97438 * 20 11 10 39 39 H 1.08992 * 117.50213 * 145.01991 * 20 11 10 40 40 H 1.09002 * 117.49898 * 214.98498 * 21 11 10 41 41 H 1.08998 * 117.49592 * 359.97438 * 21 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0404 1.4423 0.0000 4 8 1.5651 2.1158 1.1674 5 6 2.0406 -0.7224 1.2490 6 7 1.5808 -2.1180 1.2268 7 6 2.0711 -2.8120 0.0279 8 6 1.5605 -2.0901 -1.2214 9 7 2.0202 -0.6940 -1.1989 10 6 1.6134 0.0137 -2.4202 11 6 2.0542 -0.7891 -3.6458 12 6 3.5200 -1.1343 -3.7039 13 1 4.1804 -0.8211 -2.9088 14 6 4.0180 -1.8498 -4.7721 15 7 3.2139 -2.2306 -5.7406 16 14 5.8350 -2.2770 -4.8445 17 1 6.5188 -1.7366 -3.6421 18 1 5.9953 -3.7528 -4.8832 19 1 6.4353 -1.6817 -6.0653 20 6 1.3424 -0.5050 -4.9700 21 6 1.0654 -1.8080 -4.2159 22 1 -0.3634 0.5131 0.8904 23 1 -0.3634 0.5146 -0.8896 24 1 -0.3634 -1.0276 -0.0005 25 1 3.1304 1.4420 -0.0005 26 1 1.6766 1.9566 -0.8895 27 1 1.8505 3.0374 1.2333 28 1 1.6544 -0.2263 2.1394 29 1 3.1302 -0.6986 1.2628 30 1 1.8603 -2.6041 2.0658 31 1 3.1611 -2.8121 0.0279 32 1 1.7074 -3.8396 0.0283 33 1 1.9467 -2.5865 -2.1116 34 1 0.4708 -2.1138 -1.2352 35 1 0.5293 0.1267 -2.4306 36 1 2.0815 0.9978 -2.4429 37 1 3.5642 -2.7343 -6.4919 38 1 0.5597 0.2537 -4.9679 39 1 1.9341 -0.5680 -5.8831 40 1 1.4751 -2.7278 -4.6334 41 1 0.1010 -1.9067 -3.7176 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000719123267.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:58:03 Heat of formation + Delta-G solvation = -19.800412 kcal Electronic energy + Delta-G solvation = -20755.897540 eV Core-core repulsion = 17864.280053 eV Total energy + Delta-G solvation = -2891.617487 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 254.174 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.09695 -38.43232 -37.33810 -35.17655 -33.54612 -32.70215 -29.35314 -27.79484 -27.36172 -26.94019 -24.56445 -23.07932 -22.17970 -20.78213 -19.20536 -18.45950 -18.00110 -17.36157 -16.86251 -16.08885 -15.84975 -15.65413 -15.44323 -15.04181 -14.88596 -14.57823 -14.32859 -13.75449 -13.45928 -13.17281 -12.99633 -12.91527 -12.58133 -12.42517 -12.25457 -12.21903 -12.05642 -11.90941 -11.81900 -11.31113 -11.16724 -10.88538 -10.67747 -10.19484 -9.97050 -9.41626 -8.94668 -7.94824 -6.03042 1.41020 1.45264 1.55493 2.46947 2.81745 3.13032 3.31668 3.59833 3.88577 3.99307 4.11255 4.14726 4.28607 4.41027 4.42521 4.52848 4.62963 4.65579 4.67052 4.79282 4.81751 4.84030 4.95523 5.01738 5.08667 5.10148 5.14592 5.24549 5.39438 5.42272 5.49786 5.68729 5.97957 5.99630 6.19999 6.27289 6.46572 6.55482 6.61254 6.93327 6.99834 7.53438 8.99585 Molecular weight = 254.17amu Principal moments of inertia in cm(-1) A = 0.023195 B = 0.007396 C = 0.007070 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1206.891298 B = 3785.052740 C = 3959.584102 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.105 3.895 3 C 0.095 3.905 4 O -0.576 6.576 5 C 0.085 3.915 6 N -0.687 5.687 7 C 0.064 3.936 8 C 0.067 3.933 9 N -0.517 5.517 10 C 0.107 3.893 11 C 0.020 3.980 12 C -0.460 4.460 13 H 0.057 0.943 14 C 0.010 3.990 15 N -0.904 5.904 16 Si 0.951 3.049 17 H -0.270 1.270 18 H -0.286 1.286 19 H -0.287 1.287 20 C -0.194 4.194 21 C -0.180 4.180 22 H 0.066 0.934 23 H 0.039 0.961 24 H 0.057 0.943 25 H 0.049 0.951 26 H 0.046 0.954 27 H 0.397 0.603 28 H 0.090 0.910 29 H 0.026 0.974 30 H 0.352 0.648 31 H 0.028 0.972 32 H 0.088 0.912 33 H 0.074 0.926 34 H 0.027 0.973 35 H 0.020 0.980 36 H 0.065 0.935 37 H 0.254 0.746 38 H 0.059 0.941 39 H 0.084 0.916 40 H 0.080 0.920 41 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.705 4.262 12.858 13.813 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.015 3.985 3 C 0.016 3.984 4 O -0.384 6.384 5 C -0.045 4.045 6 N -0.319 5.319 7 C -0.065 4.065 8 C -0.061 4.061 9 N -0.242 5.242 10 C -0.020 4.020 11 C 0.020 3.980 12 C -0.498 4.498 13 H 0.076 0.924 14 C -0.188 4.188 15 N -0.544 5.544 16 Si 0.778 3.222 17 H -0.195 1.195 18 H -0.212 1.212 19 H -0.213 1.213 20 C -0.232 4.232 21 C -0.218 4.218 22 H 0.085 0.915 23 H 0.058 0.942 24 H 0.076 0.924 25 H 0.068 0.932 26 H 0.064 0.936 27 H 0.247 0.753 28 H 0.108 0.892 29 H 0.044 0.956 30 H 0.171 0.829 31 H 0.046 0.954 32 H 0.106 0.894 33 H 0.093 0.907 34 H 0.045 0.955 35 H 0.038 0.962 36 H 0.084 0.916 37 H 0.064 0.936 38 H 0.077 0.923 39 H 0.102 0.898 40 H 0.098 0.902 41 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -3.036 3.740 12.565 13.456 hybrid contribution 1.177 0.012 -0.743 1.392 sum -1.859 3.753 11.822 12.542 Atomic orbital electron populations 1.22107 0.96129 1.01727 1.01187 1.21087 0.93676 0.92787 0.90967 1.21967 0.97457 0.91475 0.87491 1.86356 1.77790 1.30486 1.43762 1.21808 0.96799 0.88883 0.97019 1.60494 1.63487 1.02822 1.05113 1.21955 0.97249 0.97649 0.89680 1.22068 0.96852 0.88856 0.98307 1.62155 1.59131 1.02116 1.00770 1.21515 0.95486 0.96490 0.88527 1.19077 0.92217 0.97266 0.89487 1.20756 0.92391 1.32027 1.04645 0.92432 1.25664 1.01046 0.96412 0.95720 1.70174 1.34998 1.38880 1.10319 0.85609 0.81535 0.77426 0.77617 1.19484 1.21247 1.21283 1.22766 1.02483 0.98079 0.99903 1.22629 0.97754 0.95339 1.06126 0.91481 0.94178 0.92446 0.93249 0.93554 0.75300 0.89188 0.95577 0.82861 0.95399 0.89367 0.90719 0.95524 0.96203 0.91635 0.93635 0.92308 0.89802 0.90159 0.92942 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.66 7.51 71.98 0.54 -4.12 16 2 C 0.10 3.24 0.51 3.53 0.00 3.24 16 3 C 0.09 2.60 5.58 71.98 0.40 3.00 16 4 O -0.58 -12.98 12.35 -148.98 -1.84 -14.82 16 5 C 0.08 2.37 5.26 86.31 0.45 2.83 16 6 N -0.69 -18.41 6.22 -513.44 -3.19 -21.61 16 7 C 0.06 1.99 6.72 86.31 0.58 2.57 16 8 C 0.07 2.52 4.43 86.30 0.38 2.90 16 9 N -0.52 -19.24 4.28 -846.11 -3.62 -22.85 16 10 C 0.11 4.34 4.21 86.30 0.36 4.71 16 11 C 0.02 0.97 1.35 -52.93 -0.07 0.90 16 12 C -0.46 -24.42 8.39 25.60 0.21 -24.20 16 13 H 0.06 3.11 7.81 -2.91 -0.02 3.08 16 14 C 0.01 0.52 5.27 84.66 0.45 0.96 16 15 N -0.90 -50.38 8.59 21.45 0.18 -50.19 16 16 Si 0.95 43.47 29.54 68.60 2.03 45.49 16 17 H -0.27 -12.12 7.11 99.48 0.71 -11.41 16 18 H -0.29 -12.99 7.11 99.48 0.71 -12.28 16 19 H -0.29 -13.01 7.11 99.48 0.71 -12.30 16 20 C -0.19 -9.58 9.38 30.62 0.29 -9.30 16 21 C -0.18 -8.84 7.59 30.62 0.23 -8.60 16 22 H 0.07 1.91 7.69 -2.39 -0.02 1.89 16 23 H 0.04 1.26 6.40 -2.39 -0.02 1.24 16 24 H 0.06 1.86 5.94 -2.39 -0.01 1.84 16 25 H 0.05 1.39 8.14 -2.39 -0.02 1.37 16 26 H 0.05 1.30 6.46 -2.39 -0.02 1.28 16 27 H 0.40 5.14 9.12 -74.05 -0.68 4.47 16 28 H 0.09 2.33 7.73 -2.39 -0.02 2.31 16 29 H 0.03 0.77 8.14 -2.39 -0.02 0.75 16 30 H 0.35 7.55 8.90 -89.69 -0.80 6.75 16 31 H 0.03 0.92 8.14 -2.39 -0.02 0.90 16 32 H 0.09 2.42 8.14 -2.39 -0.02 2.40 16 33 H 0.07 3.32 5.47 -2.38 -0.01 3.31 16 34 H 0.03 1.01 6.35 -2.39 -0.02 1.00 16 35 H 0.02 0.79 6.15 -2.39 -0.01 0.78 16 36 H 0.07 2.59 6.49 -2.39 -0.02 2.58 16 37 H 0.25 13.70 8.31 -92.71 -0.77 12.93 16 38 H 0.06 2.62 8.14 -2.39 -0.02 2.60 16 39 H 0.08 4.64 6.25 -2.39 -0.01 4.63 16 40 H 0.08 4.41 6.31 -2.39 -0.02 4.40 16 41 H 0.05 2.37 8.14 -2.39 -0.02 2.35 16 Total: -1.00 -59.19 302.72 -3.04 -62.23 By element: Atomic # 1 Polarization: 27.29 SS G_CDS: -0.43 Total: 26.86 kcal Atomic # 6 Polarization: -28.95 SS G_CDS: 3.83 Total: -25.11 kcal Atomic # 7 Polarization: -88.03 SS G_CDS: -6.63 Total: -94.65 kcal Atomic # 8 Polarization: -12.98 SS G_CDS: -1.84 Total: -14.82 kcal Atomic # 14 Polarization: 43.47 SS G_CDS: 2.03 Total: 45.49 kcal Total: -59.19 -3.04 -62.23 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000719123267.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.433 kcal (2) G-P(sol) polarization free energy of solvation -59.193 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.760 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.040 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.233 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.800 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds