Wall clock time and date at job start Mon Mar 30 2020 04:04:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08994 * 109.47235 * 2 1 4 4 C 1.53004 * 109.47250 * 120.00329 * 2 1 3 5 5 C 1.53005 * 117.49877 * 8.61706 * 4 2 1 6 6 C 1.53001 * 117.49321 * 299.99698 * 4 2 1 7 7 N 1.46898 * 109.46948 * 239.99685 * 2 1 3 8 8 C 1.46901 * 111.00443 * 306.04832 * 7 2 1 9 9 C 1.46906 * 110.99820 * 70.00145 * 7 2 1 10 10 C 1.50696 * 109.47351 * 169.99890 * 9 7 2 11 11 O 1.21285 * 119.99962 * 359.97438 * 10 9 7 12 12 N 1.34775 * 120.00393 * 180.02562 * 10 9 7 13 13 C 1.46496 * 119.99676 * 359.97438 * 12 10 9 14 14 C 1.46497 * 120.00052 * 180.02562 * 12 10 9 15 15 C 1.50695 * 109.47210 * 90.00314 * 14 12 10 16 16 H 1.08004 * 120.00455 * 359.97438 * 15 14 12 17 17 C 1.37880 * 119.99996 * 180.02562 * 15 14 12 18 18 N 1.31517 * 119.99733 * 180.02562 * 17 15 14 19 19 Si 1.86799 * 120.00023 * 359.97438 * 17 15 14 20 20 H 1.48503 * 109.47181 * 90.00482 * 19 17 15 21 21 H 1.48500 * 109.47097 * 210.00068 * 19 17 15 22 22 H 1.48491 * 109.47128 * 330.00069 * 19 17 15 23 23 H 1.09002 * 109.47146 * 180.02562 * 1 2 3 24 24 H 1.09007 * 109.46628 * 299.99980 * 1 2 3 25 25 H 1.08991 * 109.47344 * 60.00022 * 1 2 3 26 26 H 1.08995 * 115.55268 * 154.32847 * 4 2 1 27 27 H 1.08999 * 117.49634 * 0.02562 * 5 4 2 28 28 H 1.08998 * 117.49741 * 145.02030 * 5 4 2 29 29 H 1.09008 * 117.49713 * 214.98105 * 6 4 2 30 30 H 1.09001 * 117.50318 * 359.97438 * 6 4 2 31 31 H 1.09002 * 109.47401 * 183.95136 * 8 7 2 32 32 H 1.09001 * 109.46874 * 63.95149 * 8 7 2 33 33 H 1.09004 * 109.46970 * 303.95282 * 8 7 2 34 34 H 1.08997 * 109.46995 * 289.99871 * 9 7 2 35 35 H 1.09001 * 109.46848 * 49.99877 * 9 7 2 36 36 H 1.09001 * 109.47118 * 89.99838 * 13 12 10 37 37 H 1.08999 * 109.46864 * 209.99889 * 13 12 10 38 38 H 1.09001 * 109.47198 * 330.00174 * 13 12 10 39 39 H 1.09001 * 109.47140 * 209.99802 * 14 12 10 40 40 H 1.08999 * 109.47167 * 329.99561 * 14 12 10 41 41 H 0.97007 * 119.99298 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0401 -0.7213 1.2492 5 6 1.0104 -1.4542 2.1117 6 6 1.6358 -0.1495 2.6096 7 7 2.0196 -0.6926 -1.1994 8 6 1.4343 -2.0355 -1.3078 9 6 1.7529 0.0972 -2.4090 10 6 2.4773 -0.5163 -3.5794 11 8 3.1500 -1.5130 -3.4214 12 7 2.3785 0.0431 -4.8016 13 6 1.5664 1.2474 -4.9924 14 6 3.0823 -0.5536 -5.9394 15 6 2.1887 -1.5663 -6.6078 16 1 1.1958 -1.7477 -6.2233 17 6 2.6389 -2.2622 -7.7097 18 7 1.8587 -3.1457 -8.2933 19 14 4.3563 -1.9491 -8.3744 20 1 5.3183 -2.8663 -7.7121 21 1 4.3714 -2.1901 -9.8397 22 1 4.7444 -0.5423 -8.1001 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3633 0.5139 0.8901 25 1 -0.3633 0.5138 -0.8899 26 1 3.0324 -1.1642 1.1642 27 1 -0.0302 -1.4227 1.7889 28 1 1.3253 -2.3795 2.5941 29 1 2.3621 -0.2165 3.4197 30 1 1.0068 0.7407 2.6146 31 1 1.8663 -2.5522 -2.1648 32 1 0.3555 -1.9520 -1.4399 33 1 1.6466 -2.5988 -0.3991 34 1 0.6814 0.1052 -2.6087 35 1 2.1025 1.1188 -2.2603 36 1 2.1853 2.1312 -4.8381 37 1 1.1643 1.2576 -6.0054 38 1 0.7453 1.2492 -4.2755 39 1 3.3451 0.2265 -6.6539 40 1 3.9895 -1.0452 -5.5882 41 1 2.1757 -3.6355 -9.0683 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000035207649.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:04:13 Heat of formation + Delta-G solvation = -14.247522 kcal Electronic energy + Delta-G solvation = -19510.323693 eV Core-core repulsion = 16618.946997 eV Total energy + Delta-G solvation = -2891.376696 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 254.174 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.02426 -39.68661 -36.90654 -36.28170 -34.69322 -31.38936 -30.45356 -28.87997 -27.27385 -26.85139 -24.71858 -23.22918 -23.04018 -19.93262 -19.86642 -19.14554 -18.14676 -17.19881 -16.85266 -16.66531 -16.35161 -15.92044 -15.62845 -14.94001 -14.72405 -14.51159 -14.22216 -13.85645 -13.63149 -13.55555 -13.22842 -12.97495 -12.86838 -12.69779 -12.50708 -12.42952 -12.37576 -12.17674 -12.00815 -11.75093 -11.73650 -11.18513 -10.83434 -10.76746 -10.52838 -9.35130 -9.18611 -8.34557 -6.39437 1.32505 1.36999 1.45319 1.85170 2.23334 2.31024 2.89534 3.00159 3.12922 3.74583 3.82839 4.04651 4.16068 4.19706 4.26297 4.33232 4.33364 4.46043 4.51830 4.58771 4.64638 4.68557 4.83035 4.83812 4.94593 4.96538 4.97428 4.97862 5.10031 5.19145 5.30650 5.32816 5.38188 5.46227 5.64595 5.96999 6.20988 6.25595 6.61557 6.75845 7.22090 7.50178 8.82474 Molecular weight = 254.17amu Principal moments of inertia in cm(-1) A = 0.039070 B = 0.004509 C = 0.004397 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 716.491756 B = 6208.518841 C = 6365.821101 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C 0.113 3.887 3 H 0.097 0.903 4 C -0.155 4.155 5 C -0.188 4.188 6 C -0.160 4.160 7 N -0.533 5.533 8 C 0.029 3.971 9 C 0.051 3.949 10 C 0.495 3.505 11 O -0.577 6.577 12 N -0.611 5.611 13 C 0.077 3.923 14 C 0.225 3.775 15 C -0.536 4.536 16 H 0.027 0.973 17 C 0.010 3.990 18 N -0.946 5.946 19 Si 0.949 3.051 20 H -0.278 1.278 21 H -0.274 1.274 22 H -0.238 1.238 23 H 0.057 0.943 24 H 0.080 0.920 25 H 0.058 0.942 26 H 0.092 0.908 27 H 0.103 0.897 28 H 0.090 0.910 29 H 0.100 0.900 30 H 0.106 0.894 31 H 0.044 0.956 32 H 0.030 0.970 33 H 0.075 0.925 34 H 0.076 0.924 35 H 0.130 0.870 36 H 0.081 0.919 37 H 0.065 0.935 38 H 0.087 0.913 39 H 0.050 0.950 40 H 0.016 0.984 41 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.788 12.583 18.691 22.704 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.245 4.245 2 C 0.006 3.994 3 H 0.115 0.885 4 C -0.174 4.174 5 C -0.225 4.225 6 C -0.197 4.197 7 N -0.257 5.257 8 C -0.119 4.119 9 C -0.079 4.079 10 C 0.283 3.717 11 O -0.457 6.457 12 N -0.344 5.344 13 C -0.065 4.065 14 C 0.102 3.898 15 C -0.574 4.574 16 H 0.045 0.955 17 C -0.187 4.187 18 N -0.586 5.586 19 Si 0.772 3.228 20 H -0.203 1.203 21 H -0.199 1.199 22 H -0.161 1.161 23 H 0.076 0.924 24 H 0.099 0.901 25 H 0.077 0.923 26 H 0.110 0.890 27 H 0.121 0.879 28 H 0.108 0.892 29 H 0.118 0.882 30 H 0.125 0.875 31 H 0.063 0.937 32 H 0.049 0.951 33 H 0.094 0.906 34 H 0.094 0.906 35 H 0.147 0.853 36 H 0.100 0.900 37 H 0.083 0.917 38 H 0.105 0.895 39 H 0.068 0.932 40 H 0.034 0.966 41 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -1.945 11.921 18.655 22.224 hybrid contribution -0.349 -0.699 -0.945 1.226 sum -2.294 11.222 17.710 21.091 Atomic orbital electron populations 1.22570 0.96417 1.02424 1.03079 1.21298 0.93182 0.97574 0.87358 0.88524 1.22172 0.99472 1.04598 0.91133 1.23202 0.98941 0.96514 1.03870 1.23022 1.03417 0.97459 0.95828 1.61767 1.59610 1.02737 1.01544 1.22349 0.96489 0.90744 1.02342 1.21982 0.98925 0.98977 0.88041 1.21265 0.81816 0.83945 0.84625 1.90608 1.43032 1.27120 1.84910 1.47976 1.49403 1.29013 1.07968 1.21966 0.95334 0.85767 1.03416 1.19294 0.92239 0.93409 0.84827 1.21571 1.01000 1.22255 1.12589 0.95487 1.25862 1.02127 0.94103 0.96652 1.70056 1.39055 1.26748 1.22772 0.85697 0.78879 0.80598 0.77653 1.20340 1.19919 1.16063 0.92397 0.90085 0.92262 0.89021 0.87894 0.89157 0.88203 0.87527 0.93670 0.95111 0.90640 0.90626 0.85256 0.90041 0.91654 0.89480 0.93207 0.96564 0.92281 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -3.13 7.04 71.98 0.51 -2.62 16 2 C 0.11 2.29 2.71 44.92 0.12 2.41 16 3 H 0.10 1.71 7.93 -2.39 -0.02 1.69 16 4 C -0.16 -3.02 4.77 -10.79 -0.05 -3.07 16 5 C -0.19 -3.09 9.42 30.60 0.29 -2.80 16 6 C -0.16 -2.26 9.90 30.60 0.30 -1.95 16 7 N -0.53 -15.34 4.45 -901.60 -4.01 -19.35 16 8 C 0.03 0.92 8.35 127.69 1.07 1.99 16 9 C 0.05 1.45 3.57 85.55 0.31 1.75 16 10 C 0.49 20.42 7.40 87.66 0.65 21.07 16 11 O -0.58 -29.80 13.89 -3.04 -0.04 -29.84 16 12 N -0.61 -25.01 2.86 -851.16 -2.43 -27.44 16 13 C 0.08 2.16 10.24 127.77 1.31 3.47 16 14 C 0.22 11.16 4.23 85.63 0.36 11.52 16 15 C -0.54 -32.04 9.94 25.60 0.25 -31.79 16 16 H 0.03 1.80 8.06 -2.91 -0.02 1.78 16 17 C 0.01 0.62 5.47 84.65 0.46 1.09 16 18 N -0.95 -60.57 13.96 21.45 0.30 -60.27 16 19 Si 0.95 45.18 27.47 68.60 1.88 47.06 16 20 H -0.28 -13.36 7.11 99.48 0.71 -12.65 16 21 H -0.27 -12.45 7.11 99.48 0.71 -11.75 16 22 H -0.24 -10.13 6.54 99.48 0.65 -9.48 16 23 H 0.06 1.09 5.25 -2.39 -0.01 1.07 16 24 H 0.08 1.04 7.07 -2.38 -0.02 1.02 16 25 H 0.06 0.97 6.91 -2.39 -0.02 0.95 16 26 H 0.09 2.17 8.14 -2.39 -0.02 2.15 16 27 H 0.10 1.60 5.85 -2.39 -0.01 1.58 16 28 H 0.09 1.47 8.14 -2.39 -0.02 1.45 16 29 H 0.10 1.27 8.14 -2.38 -0.02 1.25 16 30 H 0.11 1.21 7.61 -2.39 -0.02 1.19 16 31 H 0.04 1.88 5.88 -2.39 -0.01 1.87 16 32 H 0.03 0.89 6.46 -2.39 -0.02 0.87 16 33 H 0.07 2.18 7.04 -2.38 -0.02 2.16 16 34 H 0.08 1.90 6.32 -2.39 -0.02 1.89 16 35 H 0.13 2.75 7.90 -2.39 -0.02 2.73 16 36 H 0.08 1.73 8.14 -2.39 -0.02 1.71 16 37 H 0.06 1.97 8.07 -2.39 -0.02 1.95 16 38 H 0.09 1.90 6.44 -2.39 -0.02 1.89 16 39 H 0.05 2.26 7.13 -2.39 -0.02 2.24 16 40 H 0.02 0.87 6.85 -2.39 -0.02 0.86 16 41 H 0.27 15.94 8.31 -92.70 -0.77 15.17 16 Total: -1.00 -77.41 318.06 2.22 -75.19 By element: Atomic # 1 Polarization: 12.65 SS G_CDS: 0.95 Total: 13.60 kcal Atomic # 6 Polarization: -4.52 SS G_CDS: 5.58 Total: 1.05 kcal Atomic # 7 Polarization: -100.92 SS G_CDS: -6.14 Total: -107.06 kcal Atomic # 8 Polarization: -29.80 SS G_CDS: -0.04 Total: -29.84 kcal Atomic # 14 Polarization: 45.18 SS G_CDS: 1.88 Total: 47.06 kcal Total: -77.41 2.22 -75.19 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000035207649.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.941 kcal (2) G-P(sol) polarization free energy of solvation -77.412 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.471 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.223 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.188 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.248 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds