Wall clock time and date at job start Mon Mar 30 2020 04:42:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09001 * 109.47277 * 2 1 4 4 C 1.50708 * 109.46812 * 119.99011 * 2 1 3 5 5 H 1.08003 * 119.99340 * 120.00497 * 4 2 1 6 6 C 1.37874 * 120.00208 * 300.00300 * 4 2 1 7 7 N 1.31515 * 119.99738 * 359.97438 * 6 4 2 8 8 Si 1.86798 * 119.99880 * 179.97438 * 6 4 2 9 9 H 1.48507 * 109.47079 * 60.00030 * 8 6 4 10 10 H 1.48500 * 109.47091 * 180.02562 * 8 6 4 11 11 H 1.48504 * 109.47132 * 300.00079 * 8 6 4 12 12 N 1.46497 * 109.47429 * 239.99361 * 2 1 3 13 13 C 1.46500 * 119.99930 * 301.05931 * 12 2 1 14 14 C 1.34779 * 120.00126 * 121.05826 * 12 2 1 15 15 O 1.21274 * 120.00004 * 183.05924 * 14 12 2 16 16 C 1.50703 * 119.99712 * 3.05815 * 14 12 2 17 17 C 1.53005 * 109.50180 * 57.09854 * 16 14 12 18 18 C 1.53122 * 109.49908 * 177.16978 * 16 14 12 19 19 C 1.53114 * 109.15785 * 62.33420 * 18 16 14 20 20 C 1.53037 * 109.28251 * 57.64925 * 19 18 16 21 21 N 1.46845 * 109.52077 * 300.81791 * 20 19 18 22 22 C 1.46852 * 111.19376 * 61.74602 * 21 20 19 23 23 H 1.09002 * 109.47678 * 180.02562 * 1 2 3 24 24 H 1.09002 * 109.47398 * 300.00918 * 1 2 3 25 25 H 1.09002 * 109.47266 * 60.00601 * 1 2 3 26 26 H 0.97003 * 119.99316 * 179.97438 * 7 6 4 27 27 H 1.09001 * 109.46854 * 272.89210 * 13 12 2 28 28 H 1.09003 * 109.47045 * 32.89161 * 13 12 2 29 29 H 1.09001 * 109.46839 * 152.88878 * 13 12 2 30 30 H 1.08998 * 109.46801 * 187.43218 * 17 16 14 31 31 H 1.08998 * 109.47182 * 307.42601 * 17 16 14 32 32 H 1.08996 * 109.47682 * 67.43043 * 17 16 14 33 33 H 1.09005 * 109.52023 * 182.22939 * 18 16 14 34 34 H 1.08995 * 109.52907 * 302.42340 * 18 16 14 35 35 H 1.09006 * 109.50534 * 177.59733 * 19 18 16 36 36 H 1.09000 * 109.50148 * 297.66387 * 19 18 16 37 37 H 1.08994 * 109.46472 * 60.83984 * 20 19 18 38 38 H 1.09003 * 109.46051 * 180.80738 * 20 19 18 39 39 H 1.00894 * 111.00312 * 297.64797 * 21 20 19 40 40 H 1.09008 * 109.45662 * 178.23723 * 22 21 20 41 41 H 1.08999 * 109.46474 * 58.27456 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0322 -0.7102 1.2307 5 1 2.6532 -1.5883 1.1316 6 6 1.6991 -0.2390 2.4828 7 7 0.9434 0.8305 2.6033 8 14 2.3211 -1.1199 4.0082 9 1 3.8062 -1.1204 4.0084 10 1 1.8256 -0.4200 5.2206 11 1 1.8256 -2.5198 4.0080 12 7 2.0183 -0.6907 -1.1960 13 6 1.6454 -2.0864 -1.4395 14 6 2.8107 -0.0422 -2.0724 15 8 3.1697 -0.5957 -3.0900 16 6 3.2506 1.3708 -1.7878 17 6 3.9794 1.4179 -0.4433 18 6 4.1932 1.8459 -2.8971 19 6 3.4383 1.8530 -4.2291 20 6 2.2086 2.7559 -4.1084 21 7 1.3385 2.2590 -3.0349 22 6 2.0265 2.2877 -1.7378 23 1 -0.3634 -1.0276 0.0005 24 1 -0.3634 0.5140 0.8899 25 1 -0.3634 0.5137 -0.8900 26 1 0.7087 1.1618 3.4843 27 1 2.3543 -2.7447 -0.9373 28 1 0.6432 -2.2677 -1.0512 29 1 1.6613 -2.2850 -2.5112 30 1 4.1808 2.4550 -0.1753 31 1 3.3562 0.9588 0.3241 32 1 4.9205 0.8734 -0.5208 33 1 4.5428 2.8534 -2.6712 34 1 5.0457 1.1702 -2.9650 35 1 4.0915 2.2309 -5.0157 36 1 3.1231 0.8387 -4.4742 37 1 2.5259 3.7728 -3.8774 38 1 1.6610 2.7518 -5.0509 39 1 0.9996 1.3320 -3.2440 40 1 1.3465 1.9435 -0.9584 41 1 2.3446 3.3068 -1.5178 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000063093014.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:42:27 Heat of formation + Delta-G solvation = -39.699423 kcal Electronic energy + Delta-G solvation = -21186.823317 eV Core-core repulsion = 18294.342944 eV Total energy + Delta-G solvation = -2892.480373 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 254.174 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -42.03330 -38.57324 -37.54429 -34.54469 -34.21097 -32.31154 -30.98764 -28.06167 -27.68202 -26.98288 -24.71214 -23.94954 -22.45488 -22.00034 -19.53192 -18.54660 -17.57963 -17.03081 -16.62042 -16.47272 -15.91226 -15.57960 -15.08022 -15.02485 -14.60259 -14.54506 -13.85682 -13.44036 -13.36009 -13.20480 -13.11340 -12.92763 -12.90010 -12.80058 -12.65645 -12.48680 -12.34188 -12.16571 -12.04763 -11.81590 -11.66474 -11.33260 -10.85363 -10.47851 -10.17689 -9.36984 -9.25475 -8.10751 -6.23699 1.43969 1.47011 1.52157 1.74499 2.35221 2.50519 3.16934 3.37723 3.56612 3.81306 3.97516 4.11978 4.20994 4.44298 4.51831 4.56235 4.65015 4.68754 4.74753 4.80361 4.87386 4.93924 4.97901 4.99404 5.03761 5.07311 5.09033 5.10718 5.21689 5.41104 5.48963 5.61145 5.64068 5.81430 6.02521 6.09249 6.25534 6.31908 6.70330 6.88725 7.34704 7.49276 8.91247 Molecular weight = 254.17amu Principal moments of inertia in cm(-1) A = 0.028562 B = 0.007648 C = 0.007425 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 980.099756 B = 3660.215559 C = 3770.274273 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.238 3.762 3 H 0.086 0.914 4 C -0.538 4.538 5 H 0.046 0.954 6 C 0.035 3.965 7 N -0.901 5.901 8 Si 0.944 3.056 9 H -0.277 1.277 10 H -0.282 1.282 11 H -0.278 1.278 12 N -0.593 5.593 13 C 0.093 3.907 14 C 0.512 3.488 15 O -0.590 6.590 16 C -0.106 4.106 17 C -0.164 4.164 18 C -0.087 4.087 19 C -0.163 4.163 20 C 0.058 3.942 21 N -0.684 5.684 22 C 0.057 3.943 23 H 0.031 0.969 24 H 0.075 0.925 25 H 0.029 0.971 26 H 0.266 0.734 27 H 0.041 0.959 28 H 0.073 0.927 29 H 0.065 0.935 30 H 0.076 0.924 31 H 0.090 0.910 32 H 0.046 0.954 33 H 0.084 0.916 34 H 0.049 0.951 35 H 0.078 0.922 36 H 0.063 0.937 37 H 0.084 0.916 38 H 0.083 0.917 39 H 0.331 0.669 40 H 0.087 0.913 41 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.238 3.793 -7.309 8.534 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C 0.137 3.863 3 H 0.103 0.897 4 C -0.577 4.577 5 H 0.064 0.936 6 C -0.167 4.167 7 N -0.539 5.539 8 Si 0.771 3.229 9 H -0.203 1.203 10 H -0.208 1.208 11 H -0.204 1.204 12 N -0.322 5.322 13 C -0.050 4.050 14 C 0.302 3.698 15 O -0.473 6.473 16 C -0.111 4.111 17 C -0.222 4.222 18 C -0.125 4.125 19 C -0.202 4.202 20 C -0.072 4.072 21 N -0.311 5.311 22 C -0.073 4.073 23 H 0.050 0.950 24 H 0.094 0.906 25 H 0.048 0.952 26 H 0.076 0.924 27 H 0.059 0.941 28 H 0.092 0.908 29 H 0.084 0.916 30 H 0.095 0.905 31 H 0.108 0.892 32 H 0.065 0.935 33 H 0.103 0.897 34 H 0.068 0.932 35 H 0.097 0.903 36 H 0.081 0.919 37 H 0.102 0.898 38 H 0.101 0.899 39 H 0.147 0.853 40 H 0.105 0.895 41 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 1.971 4.239 -7.570 8.897 hybrid contribution 0.936 -1.655 1.067 2.180 sum 2.907 2.584 -6.503 7.578 Atomic orbital electron populations 1.22030 0.97971 0.99676 1.00670 1.19580 0.91469 0.94739 0.80490 0.89691 1.21431 1.31865 1.13052 0.91354 0.93588 1.25369 0.94978 0.95518 1.00792 1.69914 1.36394 1.23081 1.24542 0.85835 0.78610 0.78805 0.79690 1.20299 1.20757 1.20394 1.48265 1.47668 1.12709 1.23581 1.21420 1.00538 0.82430 1.00646 1.20869 0.77771 0.88949 0.82256 1.90503 1.58626 1.70088 1.28114 1.21428 0.99207 0.92121 0.98339 1.22296 1.00551 1.03291 0.96019 1.21372 0.96651 1.01086 0.93371 1.22395 0.98917 1.01575 0.97304 1.22125 0.91876 0.98584 0.94580 1.60750 1.37997 1.29753 1.02580 1.22532 0.92789 0.99280 0.92682 0.95018 0.90590 0.95220 0.92421 0.94070 0.90829 0.91635 0.90480 0.89157 0.93532 0.89749 0.93178 0.90297 0.91892 0.89785 0.89898 0.85288 0.89505 0.88988 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -6.27 8.48 71.98 0.61 -5.66 16 2 C 0.24 10.44 0.96 44.25 0.04 10.48 16 3 H 0.09 3.78 2.48 -2.39 -0.01 3.78 16 4 C -0.54 -26.37 7.17 25.60 0.18 -26.19 16 5 H 0.05 2.34 7.64 -2.91 -0.02 2.32 16 6 C 0.03 1.72 5.30 84.65 0.45 2.17 16 7 N -0.90 -45.37 11.32 21.45 0.24 -45.13 16 8 Si 0.94 40.30 29.54 68.60 2.03 42.33 16 9 H -0.28 -11.82 7.11 99.48 0.71 -11.12 16 10 H -0.28 -11.83 7.11 99.48 0.71 -11.12 16 11 H -0.28 -11.88 7.11 99.48 0.71 -11.18 16 12 N -0.59 -24.45 2.75 -826.79 -2.27 -26.73 16 13 C 0.09 3.54 9.80 127.77 1.25 4.79 16 14 C 0.51 20.57 5.21 87.66 0.46 21.02 16 15 O -0.59 -25.58 13.22 -3.01 -0.04 -25.62 16 16 C -0.11 -3.65 0.50 -52.88 -0.03 -3.68 16 17 C -0.16 -5.87 8.09 71.98 0.58 -5.28 16 18 C -0.09 -2.61 4.44 30.67 0.14 -2.47 16 19 C -0.16 -4.57 5.76 30.65 0.18 -4.39 16 20 C 0.06 1.47 6.55 86.33 0.57 2.04 16 21 N -0.68 -21.04 6.82 -514.01 -3.51 -24.55 16 22 C 0.06 1.87 5.01 86.32 0.43 2.30 16 23 H 0.03 1.33 6.65 -2.39 -0.02 1.31 16 24 H 0.08 3.61 6.07 -2.39 -0.01 3.60 16 25 H 0.03 1.17 7.85 -2.39 -0.02 1.15 16 26 H 0.27 12.95 8.31 -92.71 -0.77 12.18 16 27 H 0.04 1.58 8.10 -2.39 -0.02 1.56 16 28 H 0.07 2.67 6.38 -2.39 -0.02 2.65 16 29 H 0.06 2.39 7.30 -2.39 -0.02 2.37 16 30 H 0.08 2.37 8.13 -2.39 -0.02 2.35 16 31 H 0.09 3.84 3.67 -2.39 -0.01 3.83 16 32 H 0.05 1.64 8.14 -2.39 -0.02 1.62 16 33 H 0.08 2.13 8.14 -2.38 -0.02 2.11 16 34 H 0.05 1.62 8.08 -2.39 -0.02 1.60 16 35 H 0.08 1.86 8.14 -2.38 -0.02 1.84 16 36 H 0.06 2.16 5.65 -2.39 -0.01 2.15 16 37 H 0.08 1.90 8.14 -2.39 -0.02 1.88 16 38 H 0.08 1.89 8.14 -2.39 -0.02 1.87 16 39 H 0.33 11.16 7.91 -89.70 -0.71 10.45 16 40 H 0.09 3.29 4.18 -2.38 -0.01 3.28 16 41 H 0.09 2.72 8.14 -2.39 -0.02 2.70 16 Total: -1.00 -53.02 299.50 1.64 -51.38 By element: Atomic # 1 Polarization: 32.86 SS G_CDS: 0.32 Total: 33.18 kcal Atomic # 6 Polarization: -9.73 SS G_CDS: 4.86 Total: -4.87 kcal Atomic # 7 Polarization: -90.86 SS G_CDS: -5.54 Total: -96.40 kcal Atomic # 8 Polarization: -25.58 SS G_CDS: -0.04 Total: -25.62 kcal Atomic # 14 Polarization: 40.30 SS G_CDS: 2.03 Total: 42.33 kcal Total: -53.02 1.64 -51.38 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000063093014.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.681 kcal (2) G-P(sol) polarization free energy of solvation -53.016 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.335 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.635 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.380 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.699 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds