Wall clock time and date at job start Mon Mar 30 2020 04:39:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 O 1.21287 * 120.00124 * 2 1 4 4 N 1.34770 * 120.00304 * 180.02562 * 2 1 3 5 5 C 1.46502 * 120.00288 * 180.02562 * 4 2 1 6 6 C 1.52997 * 109.47178 * 179.97438 * 5 4 2 7 7 H 1.09008 * 109.53459 * 305.09580 * 6 5 4 8 8 C 1.53116 * 109.50547 * 65.19527 * 6 5 4 9 9 C 1.53128 * 109.16244 * 177.59614 * 8 6 5 10 10 C 1.53031 * 109.27566 * 302.34703 * 9 8 6 11 11 N 1.46848 * 109.52822 * 59.17925 * 10 9 8 12 12 C 1.46896 * 111.00029 * 174.16131 * 11 10 9 13 13 H 1.09002 * 109.47220 * 64.20837 * 12 11 10 14 14 C 1.52997 * 109.46848 * 184.20767 * 12 11 10 15 15 C 1.50701 * 109.47239 * 304.20781 * 12 11 10 16 16 H 1.07999 * 119.99742 * 0.02562 * 15 12 11 17 17 C 1.37875 * 120.00221 * 180.02562 * 15 12 11 18 18 N 1.31519 * 119.99615 * 359.97438 * 17 15 12 19 19 Si 1.86792 * 119.99983 * 179.97438 * 17 15 12 20 20 H 1.48498 * 109.47420 * 60.00025 * 19 17 15 21 21 H 1.48503 * 109.47178 * 179.97438 * 19 17 15 22 22 H 1.48496 * 109.47539 * 299.99718 * 19 17 15 23 23 C 1.46845 * 111.19433 * 298.25821 * 11 10 9 24 24 H 1.09000 * 109.46847 * 179.97438 * 1 2 3 25 25 H 1.09002 * 109.47128 * 299.99720 * 1 2 3 26 26 H 1.08998 * 109.46997 * 59.99716 * 1 2 3 27 27 H 0.97004 * 120.00079 * 359.97438 * 4 2 1 28 28 H 1.08994 * 109.47064 * 59.99893 * 5 4 2 29 29 H 1.08998 * 109.47092 * 299.99737 * 5 4 2 30 30 H 1.09005 * 109.52193 * 297.49612 * 8 6 5 31 31 H 1.08998 * 109.52401 * 57.69149 * 8 6 5 32 32 H 1.09001 * 109.50006 * 62.28748 * 9 8 6 33 33 H 1.09000 * 109.50132 * 182.36158 * 9 8 6 34 34 H 1.09006 * 109.46457 * 299.15712 * 10 9 8 35 35 H 1.09003 * 109.46144 * 179.19641 * 10 9 8 36 36 H 1.08998 * 109.47533 * 179.97438 * 14 12 11 37 37 H 1.08996 * 109.47853 * 300.00000 * 14 12 11 38 38 H 1.09002 * 109.47153 * 60.00028 * 14 12 11 39 39 H 0.96997 * 119.99545 * 180.02562 * 18 17 15 40 40 H 1.09002 * 109.46364 * 181.75779 * 23 11 10 41 41 H 1.09002 * 109.46156 * 301.72446 * 23 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0504 0.0000 4 7 2.1809 -1.1671 -0.0005 5 6 3.6459 -1.1671 0.0000 6 6 4.1559 -2.6096 -0.0001 7 1 3.7202 -3.1503 0.8402 8 6 3.7560 -3.2931 -1.3105 9 6 4.3214 -4.7161 -1.3281 10 6 5.8417 -4.6577 -1.1633 11 7 6.1729 -3.9958 0.1051 12 6 7.6182 -4.0448 0.3627 13 1 8.1435 -3.4754 -0.4041 14 6 7.9119 -3.4408 1.7374 15 6 8.0855 -5.4772 0.3332 16 1 7.3794 -6.2717 0.1417 17 6 9.4144 -5.7735 0.5506 18 7 10.2742 -4.8059 0.7833 19 14 9.9934 -7.5491 0.5147 20 1 9.7087 -8.1358 -0.8194 21 1 11.4546 -7.5986 0.7751 22 1 9.2775 -8.3245 1.5594 23 6 5.6811 -2.6123 0.1262 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5139 -0.8899 27 1 1.6959 -2.0072 -0.0005 28 1 4.0089 -0.6539 0.8905 29 1 4.0096 -0.6527 -0.8895 30 1 2.6691 -3.3322 -1.3841 31 1 4.1591 -2.7306 -2.1526 32 1 3.8883 -5.2899 -0.5088 33 1 4.0756 -5.1936 -2.2766 34 1 6.2754 -4.0955 -1.9904 35 1 6.2459 -5.6700 -1.1611 36 1 8.9843 -3.4775 1.9289 37 1 7.5739 -2.4047 1.7589 38 1 7.3866 -4.0102 2.5042 39 1 11.2092 -5.0144 0.9359 40 1 5.9686 -2.1390 1.0651 41 1 6.1155 -2.0597 -0.7069 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000067413160.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:39:25 Heat of formation + Delta-G solvation = -49.856396 kcal Electronic energy + Delta-G solvation = -19407.412426 eV Core-core repulsion = 16514.491613 eV Total energy + Delta-G solvation = -2892.920813 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 254.174 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -39.77824 -38.52936 -35.49149 -33.81965 -31.93878 -31.40919 -29.65848 -28.41880 -25.88587 -24.72518 -23.50891 -21.36684 -20.65917 -19.84825 -19.13191 -16.93828 -16.22705 -16.09650 -15.65402 -15.38645 -14.42350 -14.15370 -13.96017 -13.72333 -13.38118 -13.12754 -12.81031 -12.72946 -12.54099 -12.37047 -11.94816 -11.63964 -11.47223 -10.95418 -10.77343 -10.66669 -10.54784 -10.35314 -10.18765 -10.08035 -9.99436 -9.84213 -9.52142 -9.10848 -8.83312 -8.42072 -7.16828 -6.01595 -4.06448 2.55656 3.17756 3.31176 3.35924 3.38334 4.39293 4.67558 4.74595 4.94481 4.98311 5.08358 5.17823 5.23307 5.30913 5.53029 5.56051 5.65805 5.75399 5.84397 5.91434 6.01012 6.18283 6.24518 6.25846 6.35489 6.39995 6.53299 6.74336 6.76703 6.88099 7.06127 7.16854 7.42565 7.53078 7.74315 7.82010 8.13872 8.21696 8.32828 8.60502 8.99835 9.58585 11.05184 Molecular weight = 254.17amu Principal moments of inertia in cm(-1) A = 0.043958 B = 0.004269 C = 0.004003 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 636.818460 B = 6557.603443 C = 6993.515062 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.506 3.494 3 O -0.552 6.552 4 N -0.725 5.725 5 C 0.122 3.878 6 C -0.095 4.095 7 H 0.082 0.918 8 C -0.111 4.111 9 C -0.117 4.117 10 C 0.062 3.938 11 N -0.531 5.531 12 C 0.213 3.787 13 H -0.003 1.003 14 C -0.133 4.133 15 C -0.505 4.505 16 H 0.063 0.937 17 C 0.059 3.941 18 N -0.893 5.893 19 Si 0.896 3.104 20 H -0.278 1.278 21 H -0.288 1.288 22 H -0.277 1.277 23 C 0.061 3.939 24 H 0.074 0.926 25 H 0.093 0.907 26 H 0.092 0.908 27 H 0.400 0.600 28 H 0.068 0.932 29 H 0.066 0.934 30 H 0.053 0.947 31 H 0.057 0.943 32 H 0.066 0.934 33 H 0.057 0.943 34 H 0.017 0.983 35 H 0.086 0.914 36 H 0.085 0.915 37 H 0.008 0.992 38 H 0.034 0.966 39 H 0.261 0.739 40 H 0.075 0.925 41 H 0.022 0.978 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.772 3.882 -2.587 17.409 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.293 3.707 3 O -0.430 6.430 4 N -0.378 5.378 5 C -0.002 4.002 6 C -0.114 4.114 7 H 0.101 0.899 8 C -0.149 4.149 9 C -0.155 4.155 10 C -0.066 4.066 11 N -0.256 5.256 12 C 0.107 3.893 13 H 0.015 0.985 14 C -0.191 4.191 15 C -0.543 4.543 16 H 0.081 0.919 17 C -0.142 4.142 18 N -0.532 5.532 19 Si 0.724 3.276 20 H -0.204 1.204 21 H -0.214 1.214 22 H -0.202 1.202 23 C -0.069 4.069 24 H 0.093 0.907 25 H 0.111 0.889 26 H 0.111 0.889 27 H 0.235 0.765 28 H 0.086 0.914 29 H 0.084 0.916 30 H 0.071 0.929 31 H 0.076 0.924 32 H 0.085 0.915 33 H 0.075 0.925 34 H 0.036 0.964 35 H 0.105 0.895 36 H 0.103 0.897 37 H 0.027 0.973 38 H 0.053 0.947 39 H 0.071 0.929 40 H 0.094 0.906 41 H 0.040 0.960 Dipole moment (debyes) X Y Z Total from point charges -16.337 4.405 -2.172 17.060 hybrid contribution 0.603 -0.907 -0.652 1.270 sum -15.735 3.498 -2.824 16.364 Atomic orbital electron populations 1.21842 0.91969 1.04087 1.05131 1.20801 0.90542 0.83617 0.75788 1.90730 1.70824 1.31502 1.49970 1.46189 1.07922 1.08591 1.75053 1.21434 0.78922 0.97517 1.02324 1.21438 0.97548 0.93515 0.98887 0.89923 1.21620 0.99286 0.96975 0.97021 1.21631 0.97076 0.95820 1.00963 1.21961 0.93300 1.00967 0.90405 1.62016 1.18935 1.12930 1.31735 1.19215 0.80282 0.96499 0.93283 0.98496 1.21845 1.03658 0.95221 0.98364 1.21114 0.93111 0.91902 1.48219 0.91901 1.24935 0.96746 0.97271 0.95270 1.69887 1.03153 1.31371 1.48798 0.86587 0.77466 0.84989 0.78510 1.20363 1.21376 1.20220 1.21968 0.92016 0.92124 1.00746 0.90651 0.88871 0.88920 0.76491 0.91357 0.91600 0.92862 0.92449 0.91541 0.92477 0.96440 0.89539 0.89687 0.97275 0.94697 0.92920 0.90631 0.95974 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.17 10.39 36.01 0.37 -0.79 16 2 C 0.51 5.88 7.94 -10.99 -0.09 5.79 16 3 O -0.55 -9.12 17.10 5.55 0.09 -9.02 16 4 N -0.73 -7.60 5.31 -60.30 -0.32 -7.92 16 5 C 0.12 1.56 5.07 -4.04 -0.02 1.54 16 6 C -0.09 -1.29 2.39 -90.54 -0.22 -1.50 16 7 H 0.08 1.13 8.14 -51.92 -0.42 0.71 16 8 C -0.11 -1.41 5.13 -26.61 -0.14 -1.54 16 9 C -0.12 -1.69 6.09 -26.65 -0.16 -1.86 16 10 C 0.06 1.18 5.21 -3.84 -0.02 1.16 16 11 N -0.53 -11.05 4.52 -228.08 -1.03 -12.08 16 12 C 0.21 5.33 2.06 -68.87 -0.14 5.18 16 13 H 0.00 -0.07 8.14 -51.93 -0.42 -0.49 16 14 C -0.13 -3.23 8.75 37.16 0.33 -2.90 16 15 C -0.50 -13.61 7.86 -34.44 -0.27 -13.88 16 16 H 0.06 1.68 6.40 -52.49 -0.34 1.34 16 17 C 0.06 1.61 5.30 -17.82 -0.09 1.52 16 18 N -0.89 -25.37 11.32 55.43 0.63 -24.74 16 19 Si 0.90 21.11 29.54 -169.99 -5.02 16.09 16 20 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 21 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 22 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 23 C 0.06 1.07 4.50 -3.83 -0.02 1.05 16 24 H 0.07 0.33 7.91 -51.93 -0.41 -0.08 16 25 H 0.09 0.58 8.14 -51.93 -0.42 0.16 16 26 H 0.09 0.57 8.14 -51.93 -0.42 0.15 16 27 H 0.40 3.11 7.52 -40.82 -0.31 2.81 16 28 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 29 H 0.07 0.92 8.14 -51.93 -0.42 0.49 16 30 H 0.05 0.54 7.27 -51.93 -0.38 0.16 16 31 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 32 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 33 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 34 H 0.02 0.34 8.14 -51.93 -0.42 -0.08 16 35 H 0.09 1.80 6.02 -51.93 -0.31 1.48 16 36 H 0.08 2.27 6.07 -51.93 -0.32 1.95 16 37 H 0.01 0.19 6.28 -51.93 -0.33 -0.14 16 38 H 0.03 0.83 8.14 -51.93 -0.42 0.41 16 39 H 0.26 7.10 8.31 -40.82 -0.34 6.76 16 40 H 0.08 1.37 6.01 -51.93 -0.31 1.06 16 41 H 0.02 0.41 8.14 -51.93 -0.42 -0.02 16 LS Contribution 319.28 15.07 4.81 4.81 Total: -1.00 -30.97 319.28 -8.21 -39.18 By element: Atomic # 1 Polarization: 6.83 SS G_CDS: -6.90 Total: -0.08 kcal Atomic # 6 Polarization: -5.77 SS G_CDS: -0.47 Total: -6.24 kcal Atomic # 7 Polarization: -44.02 SS G_CDS: -0.72 Total: -44.74 kcal Atomic # 8 Polarization: -9.12 SS G_CDS: 0.09 Total: -9.02 kcal Atomic # 14 Polarization: 21.11 SS G_CDS: -5.02 Total: 16.09 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -30.97 -8.21 -39.18 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000067413160.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.680 kcal (2) G-P(sol) polarization free energy of solvation -30.966 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.646 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.211 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.177 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.856 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds