Wall clock time and date at job start Mon Mar 30 2020 04:39:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 O 1.21287 * 120.00124 * 2 1 4 4 N 1.34770 * 120.00304 * 180.02562 * 2 1 3 5 5 C 1.46502 * 120.00288 * 180.02562 * 4 2 1 6 6 C 1.52997 * 109.47178 * 179.97438 * 5 4 2 7 7 H 1.09008 * 109.53459 * 305.09580 * 6 5 4 8 8 C 1.53116 * 109.50547 * 65.19527 * 6 5 4 9 9 C 1.53128 * 109.16244 * 177.59614 * 8 6 5 10 10 C 1.53031 * 109.27566 * 302.34703 * 9 8 6 11 11 N 1.46848 * 109.52822 * 59.17925 * 10 9 8 12 12 C 1.46896 * 111.00029 * 174.16131 * 11 10 9 13 13 H 1.09002 * 109.47220 * 64.20837 * 12 11 10 14 14 C 1.52997 * 109.46848 * 184.20767 * 12 11 10 15 15 C 1.50701 * 109.47239 * 304.20781 * 12 11 10 16 16 H 1.07999 * 119.99742 * 0.02562 * 15 12 11 17 17 C 1.37875 * 120.00221 * 180.02562 * 15 12 11 18 18 N 1.31519 * 119.99615 * 359.97438 * 17 15 12 19 19 Si 1.86792 * 119.99983 * 179.97438 * 17 15 12 20 20 H 1.48498 * 109.47420 * 60.00025 * 19 17 15 21 21 H 1.48503 * 109.47178 * 179.97438 * 19 17 15 22 22 H 1.48496 * 109.47539 * 299.99718 * 19 17 15 23 23 C 1.46845 * 111.19433 * 298.25821 * 11 10 9 24 24 H 1.09000 * 109.46847 * 179.97438 * 1 2 3 25 25 H 1.09002 * 109.47128 * 299.99720 * 1 2 3 26 26 H 1.08998 * 109.46997 * 59.99716 * 1 2 3 27 27 H 0.97004 * 120.00079 * 359.97438 * 4 2 1 28 28 H 1.08994 * 109.47064 * 59.99893 * 5 4 2 29 29 H 1.08998 * 109.47092 * 299.99737 * 5 4 2 30 30 H 1.09005 * 109.52193 * 297.49612 * 8 6 5 31 31 H 1.08998 * 109.52401 * 57.69149 * 8 6 5 32 32 H 1.09001 * 109.50006 * 62.28748 * 9 8 6 33 33 H 1.09000 * 109.50132 * 182.36158 * 9 8 6 34 34 H 1.09006 * 109.46457 * 299.15712 * 10 9 8 35 35 H 1.09003 * 109.46144 * 179.19641 * 10 9 8 36 36 H 1.08998 * 109.47533 * 179.97438 * 14 12 11 37 37 H 1.08996 * 109.47853 * 300.00000 * 14 12 11 38 38 H 1.09002 * 109.47153 * 60.00028 * 14 12 11 39 39 H 0.96997 * 119.99545 * 180.02562 * 18 17 15 40 40 H 1.09002 * 109.46364 * 181.75779 * 23 11 10 41 41 H 1.09002 * 109.46156 * 301.72446 * 23 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0504 0.0000 4 7 2.1809 -1.1671 -0.0005 5 6 3.6459 -1.1671 0.0000 6 6 4.1559 -2.6096 -0.0001 7 1 3.7202 -3.1503 0.8402 8 6 3.7560 -3.2931 -1.3105 9 6 4.3214 -4.7161 -1.3281 10 6 5.8417 -4.6577 -1.1633 11 7 6.1729 -3.9958 0.1051 12 6 7.6182 -4.0448 0.3627 13 1 8.1435 -3.4754 -0.4041 14 6 7.9119 -3.4408 1.7374 15 6 8.0855 -5.4772 0.3332 16 1 7.3794 -6.2717 0.1417 17 6 9.4144 -5.7735 0.5506 18 7 10.2742 -4.8059 0.7833 19 14 9.9934 -7.5491 0.5147 20 1 9.7087 -8.1358 -0.8194 21 1 11.4546 -7.5986 0.7751 22 1 9.2775 -8.3245 1.5594 23 6 5.6811 -2.6123 0.1262 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5139 -0.8899 27 1 1.6959 -2.0072 -0.0005 28 1 4.0089 -0.6539 0.8905 29 1 4.0096 -0.6527 -0.8895 30 1 2.6691 -3.3322 -1.3841 31 1 4.1591 -2.7306 -2.1526 32 1 3.8883 -5.2899 -0.5088 33 1 4.0756 -5.1936 -2.2766 34 1 6.2754 -4.0955 -1.9904 35 1 6.2459 -5.6700 -1.1611 36 1 8.9843 -3.4775 1.9289 37 1 7.5739 -2.4047 1.7589 38 1 7.3866 -4.0102 2.5042 39 1 11.2092 -5.0144 0.9359 40 1 5.9686 -2.1390 1.0651 41 1 6.1155 -2.0597 -0.7069 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000067413160.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:39:25 Heat of formation + Delta-G solvation = -71.850325 kcal Electronic energy + Delta-G solvation = -19408.366154 eV Core-core repulsion = 16514.491613 eV Total energy + Delta-G solvation = -2893.874541 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 254.174 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.82460 -39.88838 -36.90235 -35.31801 -33.66064 -32.60056 -30.52605 -30.16046 -27.59024 -26.17155 -25.04469 -22.68114 -21.71217 -21.48330 -20.50642 -18.33292 -17.82958 -17.22514 -17.00597 -16.52264 -16.10080 -15.54598 -15.31308 -15.03869 -14.73016 -14.42823 -14.24860 -13.96060 -13.61367 -13.38004 -13.24945 -13.04436 -12.84871 -12.83421 -12.56493 -12.24936 -12.12308 -12.03692 -11.90463 -11.56470 -11.43133 -11.08654 -10.88823 -10.75598 -10.49463 -10.09616 -8.92839 -8.11382 -6.23660 1.42675 1.44563 1.52052 1.67585 2.29769 2.42947 3.16198 3.32216 3.78279 3.85203 4.01257 4.02828 4.31103 4.43785 4.50587 4.52494 4.56221 4.67341 4.71773 4.75106 4.79545 4.86033 4.99572 5.01163 5.03831 5.12070 5.15286 5.23254 5.27116 5.33992 5.43556 5.50123 5.57787 5.72739 5.80451 6.25720 6.42112 6.62288 6.76196 6.91875 7.30292 7.45741 8.94711 Molecular weight = 254.17amu Principal moments of inertia in cm(-1) A = 0.043958 B = 0.004269 C = 0.004003 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 636.818460 B = 6557.603443 C = 6993.515062 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.500 3.500 3 O -0.609 6.609 4 N -0.712 5.712 5 C 0.131 3.869 6 C -0.078 4.078 7 H 0.092 0.908 8 C -0.106 4.106 9 C -0.107 4.107 10 C 0.059 3.941 11 N -0.532 5.532 12 C 0.215 3.785 13 H -0.044 1.044 14 C -0.121 4.121 15 C -0.519 4.519 16 H 0.063 0.937 17 C 0.009 3.991 18 N -0.923 5.923 19 Si 0.962 3.038 20 H -0.271 1.271 21 H -0.286 1.286 22 H -0.270 1.270 23 C 0.058 3.942 24 H 0.107 0.893 25 H 0.101 0.899 26 H 0.101 0.899 27 H 0.418 0.582 28 H 0.054 0.946 29 H 0.053 0.947 30 H 0.093 0.907 31 H 0.051 0.949 32 H 0.072 0.928 33 H 0.080 0.920 34 H 0.002 0.998 35 H 0.063 0.937 36 H 0.058 0.942 37 H 0.027 0.973 38 H 0.033 0.967 39 H 0.261 0.739 40 H 0.067 0.933 41 H 0.009 0.991 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.698 2.690 -2.829 20.081 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.289 3.711 3 O -0.491 6.491 4 N -0.365 5.365 5 C 0.006 3.994 6 C -0.097 4.097 7 H 0.110 0.890 8 C -0.144 4.144 9 C -0.144 4.144 10 C -0.069 4.069 11 N -0.257 5.257 12 C 0.108 3.892 13 H -0.027 1.027 14 C -0.179 4.179 15 C -0.557 4.557 16 H 0.081 0.919 17 C -0.189 4.189 18 N -0.563 5.563 19 Si 0.787 3.213 20 H -0.196 1.196 21 H -0.212 1.212 22 H -0.195 1.195 23 C -0.071 4.071 24 H 0.126 0.874 25 H 0.119 0.881 26 H 0.120 0.880 27 H 0.256 0.744 28 H 0.072 0.928 29 H 0.071 0.929 30 H 0.112 0.888 31 H 0.070 0.930 32 H 0.091 0.909 33 H 0.099 0.901 34 H 0.021 0.979 35 H 0.082 0.918 36 H 0.077 0.923 37 H 0.046 0.954 38 H 0.052 0.948 39 H 0.070 0.930 40 H 0.085 0.915 41 H 0.027 0.973 Dipole moment (debyes) X Y Z Total from point charges -19.311 3.178 -2.420 19.719 hybrid contribution 1.522 -0.500 -0.595 1.709 sum -17.788 2.678 -3.015 18.240 Atomic orbital electron populations 1.21864 0.87726 1.06530 1.05899 1.21724 0.92504 0.82702 0.74185 1.90711 1.72338 1.33515 1.52562 1.46057 1.06728 1.09462 1.74279 1.21137 0.80666 0.96461 1.01127 1.21255 0.94071 0.94292 1.00131 0.88991 1.21616 1.01617 0.95296 0.95835 1.21567 0.92996 0.97411 1.02464 1.22028 0.96920 0.99033 0.88964 1.61987 1.15932 1.14872 1.32895 1.19027 0.82706 0.95165 0.92281 1.02675 1.21655 1.01860 0.96410 0.97951 1.21410 0.93480 0.92787 1.48037 0.91918 1.25758 0.96907 1.01371 0.94913 1.70031 1.03323 1.33369 1.49543 0.85555 0.76884 0.80041 0.78827 1.19581 1.21176 1.19462 1.22044 0.95164 0.90094 0.99781 0.87395 0.88092 0.88013 0.74419 0.92782 0.92882 0.88838 0.93025 0.90925 0.90135 0.97946 0.91836 0.92305 0.95364 0.94765 0.92984 0.91490 0.97269 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.62 10.39 71.24 0.74 -0.88 16 2 C 0.50 10.56 7.94 87.66 0.70 11.25 16 3 O -0.61 -19.87 17.10 -3.05 -0.05 -19.92 16 4 N -0.71 -12.92 5.31 -463.08 -2.46 -15.38 16 5 C 0.13 3.20 5.07 86.38 0.44 3.64 16 6 C -0.08 -1.99 2.39 -10.74 -0.03 -2.01 16 7 H 0.09 2.23 8.14 -2.38 -0.02 2.21 16 8 C -0.11 -2.35 5.13 30.68 0.16 -2.19 16 9 C -0.11 -2.80 6.09 30.65 0.19 -2.62 16 10 C 0.06 2.23 5.21 86.32 0.45 2.68 16 11 N -0.53 -22.39 4.52 -875.51 -3.96 -26.35 16 12 C 0.22 11.15 2.06 44.17 0.09 11.25 16 13 H -0.04 -2.60 8.14 -2.39 -0.02 -2.62 16 14 C -0.12 -6.04 8.75 71.98 0.63 -5.41 16 15 C -0.52 -28.60 7.86 25.60 0.20 -28.40 16 16 H 0.06 3.39 6.40 -2.91 -0.02 3.37 16 17 C 0.01 0.50 5.30 84.65 0.45 0.95 16 18 N -0.92 -53.90 11.32 21.45 0.24 -53.66 16 19 Si 0.96 43.62 29.54 68.60 2.03 45.64 16 20 H -0.27 -11.87 7.11 99.48 0.71 -11.16 16 21 H -0.29 -12.81 7.11 99.48 0.71 -12.10 16 22 H -0.27 -11.86 7.11 99.48 0.71 -11.15 16 23 C 0.06 2.06 4.50 86.33 0.39 2.45 16 24 H 0.11 0.39 7.91 -2.39 -0.02 0.37 16 25 H 0.10 0.93 8.14 -2.39 -0.02 0.91 16 26 H 0.10 0.91 8.14 -2.39 -0.02 0.89 16 27 H 0.42 4.64 7.52 -92.71 -0.70 3.94 16 28 H 0.05 1.49 8.14 -2.39 -0.02 1.47 16 29 H 0.05 1.45 8.14 -2.39 -0.02 1.43 16 30 H 0.09 1.40 7.27 -2.38 -0.02 1.38 16 31 H 0.05 1.24 8.14 -2.39 -0.02 1.22 16 32 H 0.07 1.87 8.14 -2.39 -0.02 1.85 16 33 H 0.08 1.79 8.14 -2.39 -0.02 1.77 16 34 H 0.00 0.09 8.14 -2.38 -0.02 0.07 16 35 H 0.06 2.67 6.02 -2.39 -0.01 2.66 16 36 H 0.06 3.25 6.07 -2.39 -0.01 3.24 16 37 H 0.03 1.25 6.28 -2.39 -0.02 1.23 16 38 H 0.03 1.66 8.14 -2.39 -0.02 1.64 16 39 H 0.26 14.54 8.31 -92.71 -0.77 13.77 16 40 H 0.07 2.46 6.01 -2.39 -0.01 2.45 16 41 H 0.01 0.35 8.14 -2.39 -0.02 0.33 16 Total: -1.00 -70.33 319.28 0.51 -69.81 By element: Atomic # 1 Polarization: 8.85 SS G_CDS: 0.31 Total: 9.16 kcal Atomic # 6 Polarization: -13.70 SS G_CDS: 4.40 Total: -9.30 kcal Atomic # 7 Polarization: -89.22 SS G_CDS: -6.17 Total: -95.39 kcal Atomic # 8 Polarization: -19.87 SS G_CDS: -0.05 Total: -19.92 kcal Atomic # 14 Polarization: 43.62 SS G_CDS: 2.03 Total: 45.64 kcal Total: -70.33 0.51 -69.81 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000067413160.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.036 kcal (2) G-P(sol) polarization free energy of solvation -70.326 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.362 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.511 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.815 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.850 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds