Wall clock time and date at job start Mon Mar 30 2020 04:44:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08994 * 109.47505 * 2 1 4 4 C 1.50702 * 109.46794 * 119.99712 * 2 1 3 5 5 H 1.08007 * 119.99404 * 119.99918 * 4 2 1 6 6 C 1.37871 * 120.00561 * 299.99770 * 4 2 1 7 7 N 1.31522 * 119.99333 * 0.02562 * 6 4 2 8 8 Si 1.86795 * 120.00329 * 179.97438 * 6 4 2 9 9 H 1.48497 * 109.47080 * 90.00216 * 8 6 4 10 10 H 1.48503 * 109.47160 * 209.99910 * 8 6 4 11 11 H 1.48504 * 109.47106 * 330.00262 * 8 6 4 12 12 N 1.46501 * 109.47176 * 239.99556 * 2 1 3 13 13 C 1.46498 * 119.99965 * 300.00641 * 12 2 1 14 14 C 1.34781 * 119.99876 * 120.00248 * 12 2 1 15 15 O 1.21279 * 119.99793 * 359.97438 * 14 12 2 16 16 C 1.50699 * 119.99923 * 180.02562 * 14 12 2 17 17 H 1.08995 * 110.01580 * 333.03334 * 16 14 12 18 18 C 1.54259 * 110.03187 * 211.63738 * 16 14 12 19 19 C 1.54891 * 104.19608 * 217.05776 * 18 16 14 20 20 C 1.54885 * 102.74882 * 37.94316 * 19 18 16 21 21 C 1.53874 * 110.07211 * 94.44823 * 16 14 12 22 22 H 1.09000 * 110.03329 * 238.59327 * 21 16 14 23 23 C 1.53001 * 110.03291 * 0.02562 * 21 16 14 24 24 N 1.46906 * 109.47147 * 185.06189 * 23 21 16 25 25 H 1.09000 * 109.46424 * 59.99850 * 1 2 3 26 26 H 1.08994 * 109.47505 * 180.02562 * 1 2 3 27 27 H 1.09004 * 109.47179 * 300.00494 * 1 2 3 28 28 H 0.97005 * 119.99287 * 179.97438 * 7 6 4 29 29 H 1.09000 * 109.46890 * 269.99690 * 13 12 2 30 30 H 1.08996 * 109.47352 * 29.99713 * 13 12 2 31 31 H 1.09003 * 109.47086 * 149.99938 * 13 12 2 32 32 H 1.09008 * 110.49033 * 335.73398 * 18 16 14 33 33 H 1.08999 * 110.49102 * 98.24722 * 18 16 14 34 34 H 1.09002 * 110.75831 * 156.25733 * 19 18 16 35 35 H 1.08997 * 110.75568 * 279.44297 * 19 18 16 36 36 H 1.09007 * 110.48685 * 80.73534 * 20 19 18 37 37 H 1.09004 * 110.48987 * 203.37786 * 20 19 18 38 38 H 1.08999 * 109.47506 * 305.05908 * 23 21 16 39 39 H 1.08997 * 109.47407 * 65.06261 * 23 21 16 40 40 H 1.00903 * 111.00031 * 180.02562 * 24 23 21 41 41 H 1.00896 * 110.99953 * 303.95385 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.6532 -1.5885 1.1314 6 6 1.6993 -0.2393 2.4828 7 7 0.9428 0.8298 2.6033 8 14 2.3213 -1.1203 4.0080 9 1 3.6296 -0.5459 4.4124 10 1 1.3430 -0.9491 5.1121 11 1 2.4857 -2.5662 3.7120 12 7 2.0184 -0.6907 -1.1961 13 6 1.6644 -2.0932 -1.4279 14 6 2.7933 -0.0357 -2.0833 15 8 3.0859 1.1255 -1.8916 16 6 3.2952 -0.7461 -3.3140 17 1 3.3681 -1.8167 -3.1231 18 6 4.6738 -0.1867 -3.7217 19 6 4.6424 -0.1904 -5.2703 20 6 3.1832 0.2237 -5.5835 21 6 2.3474 -0.4851 -4.4978 22 1 1.9604 -1.4291 -4.8814 23 6 1.1917 0.4147 -4.0554 24 7 0.2321 0.5572 -5.1586 25 1 -0.3632 0.5139 -0.8900 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3634 0.5139 0.8900 28 1 0.7082 1.1610 3.4844 29 1 2.4156 -2.7378 -0.9715 30 1 0.6904 -2.3002 -0.9846 31 1 1.6238 -2.2853 -2.5001 32 1 4.8002 0.8284 -3.3451 33 1 5.4714 -0.8315 -3.3528 34 1 5.3457 0.5387 -5.6727 35 1 4.8561 -1.1862 -5.6586 36 1 3.0688 1.3051 -5.5076 37 1 2.8927 -0.1229 -6.5754 38 1 0.6927 -0.0312 -3.1951 39 1 1.5794 1.3961 -3.7821 40 1 -0.5411 1.1479 -4.8913 41 1 0.6851 0.9087 -5.9888 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000084310834.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:44:46 Heat of formation + Delta-G solvation = -49.737470 kcal Electronic energy + Delta-G solvation = -20329.470869 eV Core-core repulsion = 17436.555213 eV Total energy + Delta-G solvation = -2892.915656 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 254.174 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.08711 -37.27064 -35.23551 -33.92005 -32.84105 -30.10624 -28.62512 -28.32304 -26.06293 -25.19662 -23.62346 -22.08093 -20.49338 -19.63406 -17.71665 -16.71751 -16.46128 -15.81825 -15.53443 -15.19389 -14.66966 -14.41596 -13.91170 -13.73361 -12.94986 -12.79601 -12.55699 -12.48638 -12.22256 -11.72444 -11.52818 -11.33958 -11.04085 -10.98725 -10.90148 -10.82158 -10.70556 -10.56732 -10.49773 -10.35229 -10.21500 -10.14850 -9.15606 -8.83329 -8.58045 -8.40274 -7.52815 -6.06041 -4.13779 3.27635 3.33712 3.35204 3.41923 3.99879 4.40726 4.51369 4.63887 4.78425 4.99712 5.24712 5.36350 5.45086 5.47051 5.60249 5.63427 5.68901 5.79496 5.80027 5.94752 6.01868 6.06588 6.11400 6.17228 6.31363 6.35535 6.42499 6.53598 6.77692 6.83860 7.07358 7.19142 7.47505 7.49279 7.54780 7.73727 8.03543 8.21977 8.58157 8.85804 9.11481 9.52995 10.99187 Molecular weight = 254.17amu Principal moments of inertia in cm(-1) A = 0.030708 B = 0.006117 C = 0.005617 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 911.598124 B = 4576.545724 C = 4983.569012 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.258 3.742 3 H 0.062 0.938 4 C -0.524 4.524 5 H 0.058 0.942 6 C 0.064 3.936 7 N -0.889 5.889 8 Si 0.898 3.102 9 H -0.280 1.280 10 H -0.286 1.286 11 H -0.274 1.274 12 N -0.594 5.594 13 C 0.085 3.915 14 C 0.514 3.486 15 O -0.554 6.554 16 C -0.114 4.114 17 H 0.088 0.912 18 C -0.113 4.113 19 C -0.121 4.121 20 C -0.118 4.118 21 C -0.072 4.072 22 H 0.082 0.918 23 C 0.054 3.946 24 N -0.849 5.849 25 H 0.010 0.990 26 H 0.030 0.970 27 H 0.093 0.907 28 H 0.263 0.737 29 H 0.047 0.953 30 H 0.072 0.928 31 H 0.054 0.946 32 H 0.085 0.915 33 H 0.064 0.936 34 H 0.065 0.935 35 H 0.065 0.935 36 H 0.064 0.936 37 H 0.065 0.935 38 H 0.080 0.920 39 H 0.040 0.960 40 H 0.340 0.660 41 H 0.334 0.666 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.000 -3.987 -14.516 15.186 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.158 3.842 3 H 0.080 0.920 4 C -0.562 4.562 5 H 0.077 0.923 6 C -0.138 4.138 7 N -0.527 5.527 8 Si 0.726 3.274 9 H -0.206 1.206 10 H -0.211 1.211 11 H -0.199 1.199 12 N -0.324 5.324 13 C -0.059 4.059 14 C 0.301 3.699 15 O -0.434 6.434 16 C -0.136 4.136 17 H 0.107 0.893 18 C -0.151 4.151 19 C -0.159 4.159 20 C -0.156 4.156 21 C -0.091 4.091 22 H 0.101 0.899 23 C -0.077 4.077 24 N -0.378 5.378 25 H 0.029 0.971 26 H 0.049 0.951 27 H 0.111 0.889 28 H 0.073 0.927 29 H 0.066 0.934 30 H 0.091 0.909 31 H 0.073 0.927 32 H 0.103 0.897 33 H 0.083 0.917 34 H 0.084 0.916 35 H 0.084 0.916 36 H 0.083 0.917 37 H 0.084 0.916 38 H 0.098 0.902 39 H 0.058 0.942 40 H 0.152 0.848 41 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 1.941 -4.061 -14.148 14.847 hybrid contribution 0.473 0.360 1.080 1.233 sum 2.414 -3.701 -13.068 13.795 Atomic orbital electron populations 1.22089 0.98334 0.99334 1.00690 1.18906 0.90752 0.94450 0.80140 0.92040 1.21333 1.31650 1.12911 0.90348 0.92339 1.24898 0.94977 0.95009 0.98966 1.69888 1.36431 1.22724 1.23685 0.86498 0.78628 0.79880 0.82397 1.20647 1.21135 1.19933 1.48252 1.49084 1.11566 1.23516 1.21573 1.01486 0.83345 0.99459 1.20207 0.78709 0.87122 0.83861 1.90615 1.58682 1.17230 1.76828 1.22059 0.96541 1.00952 0.94037 0.89338 1.22351 0.94749 1.02849 0.95124 1.22454 0.96477 1.01008 0.95934 1.22431 0.94953 1.00226 0.97988 1.21636 0.94128 0.99491 0.93852 0.89920 1.22157 0.92680 0.98929 0.93916 1.58804 1.12970 1.58804 1.07228 0.97141 0.95095 0.88883 0.92741 0.93431 0.90925 0.92736 0.89668 0.91675 0.91640 0.91639 0.91731 0.91596 0.90179 0.94158 0.84815 0.85418 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.51 8.95 37.16 0.33 -3.17 16 2 C 0.26 6.61 2.64 -69.08 -0.18 6.43 16 3 H 0.06 1.84 6.90 -51.93 -0.36 1.48 16 4 C -0.52 -14.30 8.37 -34.44 -0.29 -14.58 16 5 H 0.06 1.58 7.65 -52.48 -0.40 1.18 16 6 C 0.06 1.75 5.30 -17.82 -0.09 1.66 16 7 N -0.89 -25.35 11.32 55.43 0.63 -24.72 16 8 Si 0.90 21.24 29.54 -169.99 -5.02 16.22 16 9 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 10 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 11 H -0.27 -6.35 7.11 56.52 0.40 -5.95 16 12 N -0.59 -12.64 2.26 -175.26 -0.40 -13.03 16 13 C 0.09 1.47 9.05 59.85 0.54 2.01 16 14 C 0.51 10.53 4.52 -10.98 -0.05 10.48 16 15 O -0.55 -13.48 14.32 5.56 0.08 -13.40 16 16 C -0.11 -1.75 2.41 -90.66 -0.22 -1.97 16 17 H 0.09 1.23 6.50 -51.93 -0.34 0.89 16 18 C -0.11 -1.60 6.31 -25.07 -0.16 -1.76 16 19 C -0.12 -1.35 6.91 -24.74 -0.17 -1.52 16 20 C -0.12 -1.36 5.56 -25.08 -0.14 -1.50 16 21 C -0.07 -0.97 2.97 -89.50 -0.27 -1.23 16 22 H 0.08 1.04 8.14 -51.93 -0.42 0.62 16 23 C 0.05 0.82 4.96 -3.82 -0.02 0.80 16 24 N -0.85 -10.59 9.62 -10.37 -0.10 -10.69 16 25 H 0.01 0.22 8.14 -51.93 -0.42 -0.21 16 26 H 0.03 0.69 6.66 -51.93 -0.35 0.34 16 27 H 0.09 2.46 6.07 -51.93 -0.32 2.15 16 28 H 0.26 7.12 8.31 -40.82 -0.34 6.78 16 29 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 30 H 0.07 1.27 6.43 -51.93 -0.33 0.93 16 31 H 0.05 0.77 6.32 -51.93 -0.33 0.44 16 32 H 0.08 1.43 6.90 -51.92 -0.36 1.07 16 33 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 34 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 35 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 36 H 0.06 0.79 7.76 -51.93 -0.40 0.39 16 37 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 38 H 0.08 1.42 6.80 -51.93 -0.35 1.06 16 39 H 0.04 0.71 7.08 -51.93 -0.37 0.35 16 40 H 0.34 3.95 9.08 -39.29 -0.36 3.60 16 41 H 0.33 3.56 8.23 -39.29 -0.32 3.23 16 LS Contribution 314.02 15.07 4.73 4.73 Total: -1.00 -30.49 314.02 -7.47 -37.96 By element: Atomic # 1 Polarization: 13.98 SS G_CDS: -6.68 Total: 7.30 kcal Atomic # 6 Polarization: -3.65 SS G_CDS: -0.71 Total: -4.36 kcal Atomic # 7 Polarization: -48.58 SS G_CDS: 0.13 Total: -48.44 kcal Atomic # 8 Polarization: -13.48 SS G_CDS: 0.08 Total: -13.40 kcal Atomic # 14 Polarization: 21.24 SS G_CDS: -5.02 Total: 16.22 kcal Total LS contribution 4.73 Total: 4.73 kcal Total: -30.49 -7.47 -37.96 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084310834.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.781 kcal (2) G-P(sol) polarization free energy of solvation -30.490 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.272 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.466 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.956 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.737 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds