Wall clock time and date at job start Mon Mar 30 2020 03:59:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52998 * 109.46628 * 2 1 4 4 C 1.52999 * 109.47123 * 120.00073 * 2 1 3 5 5 N 1.46901 * 109.46989 * 184.51793 * 4 2 1 6 6 C 1.47187 * 110.99874 * 168.07884 * 5 4 2 7 7 C 1.52824 * 108.86159 * 192.21415 * 6 5 4 8 8 H 1.08994 * 109.18067 * 70.17636 * 7 6 5 9 9 C 1.53008 * 109.47640 * 189.76578 * 7 6 5 10 10 N 1.46004 * 110.13729 * 310.06081 * 7 6 5 11 11 C 1.46500 * 118.53704 * 197.98168 * 10 7 6 12 12 C 1.33713 * 122.92958 * 17.70249 * 10 7 6 13 13 O 1.21282 * 118.62943 * 178.59370 * 12 10 7 14 14 C 1.46906 * 110.99534 * 290.96978 * 5 4 2 15 15 H 1.08999 * 109.38410 * 306.48641 * 14 5 4 16 16 C 1.50697 * 109.38743 * 66.18285 * 14 5 4 17 17 H 1.08002 * 120.00058 * 6.70037 * 16 14 5 18 18 C 1.37882 * 119.99927 * 186.70522 * 16 14 5 19 19 N 1.31509 * 119.99600 * 359.97438 * 18 16 14 20 20 Si 1.86797 * 119.99997 * 179.97438 * 18 16 14 21 21 H 1.48500 * 109.46812 * 90.00039 * 20 18 16 22 22 H 1.48501 * 109.47193 * 209.99752 * 20 18 16 23 23 H 1.48501 * 109.47163 * 330.00310 * 20 18 16 24 24 H 1.08998 * 109.47627 * 299.99782 * 1 2 3 25 25 H 1.08997 * 109.47413 * 60.00247 * 1 2 3 26 26 H 1.09005 * 109.47072 * 179.97438 * 1 2 3 27 27 H 1.09000 * 109.46950 * 240.00518 * 2 1 3 28 28 H 1.09000 * 109.46653 * 176.66529 * 3 2 1 29 29 H 1.09000 * 109.47397 * 296.65881 * 3 2 1 30 30 H 1.08997 * 109.47567 * 56.66479 * 3 2 1 31 31 H 1.08992 * 109.47357 * 64.51587 * 4 2 1 32 32 H 1.08999 * 109.46929 * 304.51271 * 4 2 1 33 33 H 1.08997 * 109.59214 * 312.13174 * 6 5 4 34 34 H 1.08995 * 109.59502 * 72.44086 * 6 5 4 35 35 H 1.08991 * 109.47433 * 180.76024 * 9 7 6 36 36 H 1.09000 * 109.47218 * 300.76457 * 9 7 6 37 37 H 1.09003 * 109.46763 * 60.75590 * 9 7 6 38 38 H 1.09002 * 109.47110 * 179.73446 * 11 10 7 39 39 H 1.09004 * 109.46900 * 299.73105 * 11 10 7 40 40 H 1.09002 * 109.47205 * 59.73351 * 11 10 7 41 41 H 0.97006 * 119.99869 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 7 3.5050 -0.6275 1.3050 6 6 4.0112 -1.0551 2.6192 7 6 5.4820 -0.6568 2.7356 8 1 5.5538 0.4275 2.8204 9 6 6.0882 -1.3023 3.9834 10 7 6.2177 -1.1002 1.5549 11 6 7.6785 -1.1821 1.6305 12 6 5.6174 -1.4399 0.4095 13 8 6.3065 -1.7727 -0.5314 14 6 4.1245 -1.4262 0.2390 15 1 3.7457 -2.4472 0.2853 16 6 3.7794 -0.8270 -1.1000 17 1 3.2549 0.1158 -1.1506 18 6 4.1332 -1.4823 -2.2603 19 7 4.7723 -2.6300 -2.1985 20 14 3.7049 -0.7399 -3.9200 21 1 4.8149 0.1375 -4.3711 22 1 3.4995 -1.8271 -4.9105 23 1 2.4599 0.0603 -3.7979 24 1 -0.3634 0.5138 0.8900 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 1.8933 -0.5138 -0.8900 28 1 3.1282 1.4431 0.0598 29 1 1.7263 1.9388 -0.9184 30 1 1.6286 1.9733 0.8585 31 1 1.7443 -1.7696 1.2097 32 1 1.6122 -0.2562 2.1373 33 1 3.4366 -0.5695 3.4079 34 1 3.9183 -2.1371 2.7124 35 1 7.1336 -1.0073 4.0737 36 1 5.5400 -0.9724 4.8659 37 1 6.0226 -2.3871 3.8995 38 1 8.0727 -1.5309 0.6759 39 1 8.0866 -0.1964 1.8537 40 1 7.9630 -1.8801 2.4179 41 1 5.0216 -3.0909 -3.0149 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000251634207.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:59:02 Heat of formation + Delta-G solvation = -1.062877 kcal Electronic energy + Delta-G solvation = -20937.471282 eV Core-core repulsion = 18046.666315 eV Total energy + Delta-G solvation = -2890.804967 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 254.174 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -39.54020 -36.91775 -35.63980 -33.37501 -32.20909 -30.59126 -28.02723 -27.20994 -26.34023 -24.99772 -23.89762 -21.52716 -21.29947 -19.19896 -17.68922 -16.84360 -15.81792 -15.26940 -14.85334 -14.57737 -14.23475 -13.75286 -13.55687 -13.18560 -12.92657 -12.56934 -12.41626 -11.98210 -11.93415 -11.87547 -11.55062 -11.49780 -11.21896 -11.06367 -10.89320 -10.81111 -10.74623 -10.52714 -10.13339 -9.98186 -9.88796 -9.38705 -8.80156 -8.27802 -8.07271 -7.66283 -7.37176 -5.89844 -3.91069 3.37094 3.44391 3.44753 3.99991 4.20962 4.50941 4.72978 5.24198 5.35880 5.48635 5.56865 5.64519 5.76052 5.79013 5.80961 5.94351 5.99717 6.03797 6.07022 6.14227 6.19499 6.27954 6.33566 6.38523 6.51880 6.53135 6.61927 6.70706 6.77268 6.93412 7.15488 7.31225 7.34458 7.57320 7.76788 7.94840 8.05724 8.40853 8.68240 9.05640 9.66603 9.81194 11.16457 Molecular weight = 254.17amu Principal moments of inertia in cm(-1) A = 0.017286 B = 0.011140 C = 0.007447 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1619.464890 B = 2512.878785 C = 3758.754653 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.124 4.124 3 C -0.129 4.129 4 C 0.083 3.917 5 N -0.528 5.528 6 C 0.042 3.958 7 C 0.155 3.845 8 H 0.065 0.935 9 C -0.161 4.161 10 N -0.629 5.629 11 C 0.078 3.922 12 C 0.511 3.489 13 O -0.498 6.498 14 C 0.215 3.785 15 H 0.031 0.969 16 C -0.538 4.538 17 H 0.098 0.902 18 C 0.076 3.924 19 N -0.836 5.836 20 Si 0.888 3.112 21 H -0.281 1.281 22 H -0.288 1.288 23 H -0.271 1.271 24 H 0.038 0.962 25 H 0.047 0.953 26 H 0.045 0.955 27 H 0.136 0.864 28 H 0.078 0.922 29 H 0.033 0.967 30 H 0.030 0.970 31 H 0.022 0.978 32 H 0.050 0.950 33 H 0.076 0.924 34 H 0.031 0.969 35 H 0.059 0.941 36 H 0.062 0.938 37 H 0.056 0.944 38 H 0.082 0.918 39 H 0.041 0.959 40 H 0.042 0.958 41 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.430 3.555 10.306 11.170 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.142 4.142 3 C -0.186 4.186 4 C -0.045 4.045 5 N -0.254 5.254 6 C -0.087 4.087 7 C 0.050 3.950 8 H 0.083 0.917 9 C -0.219 4.219 10 N -0.368 5.368 11 C -0.065 4.065 12 C 0.300 3.700 13 O -0.368 6.368 14 C 0.105 3.895 15 H 0.048 0.952 16 C -0.576 4.576 17 H 0.116 0.884 18 C -0.132 4.132 19 N -0.469 5.469 20 Si 0.715 3.285 21 H -0.207 1.207 22 H -0.214 1.214 23 H -0.196 1.196 24 H 0.057 0.943 25 H 0.066 0.934 26 H 0.064 0.936 27 H 0.153 0.847 28 H 0.097 0.903 29 H 0.053 0.947 30 H 0.049 0.951 31 H 0.041 0.959 32 H 0.068 0.932 33 H 0.094 0.906 34 H 0.049 0.951 35 H 0.078 0.922 36 H 0.081 0.919 37 H 0.075 0.925 38 H 0.101 0.899 39 H 0.059 0.941 40 H 0.061 0.939 41 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -1.849 3.672 9.542 10.390 hybrid contribution -0.254 -0.500 -0.521 0.766 sum -2.103 3.172 9.021 9.791 Atomic orbital electron populations 1.21865 0.97582 1.00467 1.00252 1.22021 0.92531 0.97413 1.02207 1.21679 1.03148 0.95302 0.98503 1.21838 0.87409 0.97675 0.97569 1.62538 1.05779 1.55497 1.01550 1.22368 0.94422 0.98169 0.93780 1.20704 0.91099 0.98157 0.85024 0.91719 1.22151 1.01113 1.01312 0.97340 1.47993 1.05818 1.69872 1.13166 1.21434 0.82824 0.99555 1.02720 1.21834 0.92530 0.75154 0.80485 1.90657 1.63833 1.44898 1.37408 1.19382 0.86000 0.93189 0.90892 0.95201 1.21265 1.39720 1.09008 0.87563 0.88422 1.24986 0.94326 0.94904 0.99030 1.70091 1.34766 1.14367 1.27668 0.86667 0.78809 0.78890 0.84090 1.20719 1.21431 1.19553 0.94262 0.93425 0.93595 0.84712 0.90318 0.94749 0.95081 0.95933 0.93170 0.90578 0.95124 0.92224 0.91892 0.92461 0.89923 0.94073 0.93911 0.93265 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.24 9.19 37.16 0.34 -1.90 16 2 C -0.12 -2.32 2.36 -90.62 -0.21 -2.53 16 3 C -0.13 -2.35 7.90 37.16 0.29 -2.05 16 4 C 0.08 1.53 4.45 -3.82 -0.02 1.51 16 5 N -0.53 -10.67 3.55 -229.57 -0.81 -11.49 16 6 C 0.04 0.70 4.88 -3.76 -0.02 0.69 16 7 C 0.16 2.55 3.54 -68.29 -0.24 2.31 16 8 H 0.06 1.05 8.14 -51.93 -0.42 0.62 16 9 C -0.16 -2.03 8.48 37.16 0.32 -1.71 16 10 N -0.63 -12.90 3.11 -174.90 -0.54 -13.45 16 11 C 0.08 1.39 9.61 59.85 0.57 1.97 16 12 C 0.51 13.02 7.12 -11.67 -0.08 12.94 16 13 O -0.50 -14.64 12.73 5.56 0.07 -14.57 16 14 C 0.21 5.33 1.82 -70.23 -0.13 5.20 16 15 H 0.03 0.84 8.01 -51.93 -0.42 0.43 16 16 C -0.54 -14.22 5.81 -34.44 -0.20 -14.42 16 17 H 0.10 2.47 3.19 -52.49 -0.17 2.30 16 18 C 0.08 2.12 4.95 -17.82 -0.09 2.03 16 19 N -0.84 -24.88 10.96 55.43 0.61 -24.28 16 20 Si 0.89 21.57 29.54 -169.99 -5.02 16.55 16 21 H -0.28 -6.99 7.11 56.52 0.40 -6.59 16 22 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 23 H -0.27 -6.28 7.11 56.52 0.40 -5.88 16 24 H 0.04 0.55 8.14 -51.93 -0.42 0.12 16 25 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 26 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 27 H 0.14 3.02 4.59 -51.93 -0.24 2.78 16 28 H 0.08 1.62 6.30 -51.93 -0.33 1.30 16 29 H 0.03 0.60 8.14 -51.93 -0.42 0.17 16 30 H 0.03 0.50 8.14 -51.93 -0.42 0.07 16 31 H 0.02 0.43 8.00 -51.93 -0.42 0.01 16 32 H 0.05 0.80 7.87 -51.93 -0.41 0.40 16 33 H 0.08 1.07 7.87 -51.93 -0.41 0.66 16 34 H 0.03 0.54 8.05 -51.93 -0.42 0.12 16 35 H 0.06 0.70 6.93 -51.93 -0.36 0.34 16 36 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 37 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 38 H 0.08 1.68 6.67 -51.93 -0.35 1.33 16 39 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16 40 H 0.04 0.65 6.93 -51.93 -0.36 0.29 16 41 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 LS Contribution 307.31 15.07 4.63 4.63 Total: -1.00 -30.91 307.31 -7.34 -38.25 By element: Atomic # 1 Polarization: 7.12 SS G_CDS: -6.81 Total: 0.32 kcal Atomic # 6 Polarization: 3.49 SS G_CDS: 0.54 Total: 4.02 kcal Atomic # 7 Polarization: -48.46 SS G_CDS: -0.75 Total: -49.21 kcal Atomic # 8 Polarization: -14.64 SS G_CDS: 0.07 Total: -14.57 kcal Atomic # 14 Polarization: 21.57 SS G_CDS: -5.02 Total: 16.55 kcal Total LS contribution 4.63 Total: 4.63 kcal Total: -30.91 -7.34 -38.25 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000251634207.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.191 kcal (2) G-P(sol) polarization free energy of solvation -30.913 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.279 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.341 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.254 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.063 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds