Wall clock time and date at job start Mon Mar 30 2020 03:59:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52998 * 109.46628 * 2 1 4 4 C 1.52999 * 109.47123 * 120.00073 * 2 1 3 5 5 N 1.46901 * 109.46989 * 184.51793 * 4 2 1 6 6 C 1.47187 * 110.99874 * 168.07884 * 5 4 2 7 7 C 1.52824 * 108.86159 * 192.21415 * 6 5 4 8 8 H 1.08994 * 109.18067 * 70.17636 * 7 6 5 9 9 C 1.53008 * 109.47640 * 189.76578 * 7 6 5 10 10 N 1.46004 * 110.13729 * 310.06081 * 7 6 5 11 11 C 1.46500 * 118.53704 * 197.98168 * 10 7 6 12 12 C 1.33713 * 122.92958 * 17.70249 * 10 7 6 13 13 O 1.21282 * 118.62943 * 178.59370 * 12 10 7 14 14 C 1.46906 * 110.99534 * 290.96978 * 5 4 2 15 15 H 1.08999 * 109.38410 * 306.48641 * 14 5 4 16 16 C 1.50697 * 109.38743 * 66.18285 * 14 5 4 17 17 H 1.08002 * 120.00058 * 6.70037 * 16 14 5 18 18 C 1.37882 * 119.99927 * 186.70522 * 16 14 5 19 19 N 1.31509 * 119.99600 * 359.97438 * 18 16 14 20 20 Si 1.86797 * 119.99997 * 179.97438 * 18 16 14 21 21 H 1.48500 * 109.46812 * 90.00039 * 20 18 16 22 22 H 1.48501 * 109.47193 * 209.99752 * 20 18 16 23 23 H 1.48501 * 109.47163 * 330.00310 * 20 18 16 24 24 H 1.08998 * 109.47627 * 299.99782 * 1 2 3 25 25 H 1.08997 * 109.47413 * 60.00247 * 1 2 3 26 26 H 1.09005 * 109.47072 * 179.97438 * 1 2 3 27 27 H 1.09000 * 109.46950 * 240.00518 * 2 1 3 28 28 H 1.09000 * 109.46653 * 176.66529 * 3 2 1 29 29 H 1.09000 * 109.47397 * 296.65881 * 3 2 1 30 30 H 1.08997 * 109.47567 * 56.66479 * 3 2 1 31 31 H 1.08992 * 109.47357 * 64.51587 * 4 2 1 32 32 H 1.08999 * 109.46929 * 304.51271 * 4 2 1 33 33 H 1.08997 * 109.59214 * 312.13174 * 6 5 4 34 34 H 1.08995 * 109.59502 * 72.44086 * 6 5 4 35 35 H 1.08991 * 109.47433 * 180.76024 * 9 7 6 36 36 H 1.09000 * 109.47218 * 300.76457 * 9 7 6 37 37 H 1.09003 * 109.46763 * 60.75590 * 9 7 6 38 38 H 1.09002 * 109.47110 * 179.73446 * 11 10 7 39 39 H 1.09004 * 109.46900 * 299.73105 * 11 10 7 40 40 H 1.09002 * 109.47205 * 59.73351 * 11 10 7 41 41 H 0.97006 * 119.99869 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 7 3.5050 -0.6275 1.3050 6 6 4.0112 -1.0551 2.6192 7 6 5.4820 -0.6568 2.7356 8 1 5.5538 0.4275 2.8204 9 6 6.0882 -1.3023 3.9834 10 7 6.2177 -1.1002 1.5549 11 6 7.6785 -1.1821 1.6305 12 6 5.6174 -1.4399 0.4095 13 8 6.3065 -1.7727 -0.5314 14 6 4.1245 -1.4262 0.2390 15 1 3.7457 -2.4472 0.2853 16 6 3.7794 -0.8270 -1.1000 17 1 3.2549 0.1158 -1.1506 18 6 4.1332 -1.4823 -2.2603 19 7 4.7723 -2.6300 -2.1985 20 14 3.7049 -0.7399 -3.9200 21 1 4.8149 0.1375 -4.3711 22 1 3.4995 -1.8271 -4.9105 23 1 2.4599 0.0603 -3.7979 24 1 -0.3634 0.5138 0.8900 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 1.8933 -0.5138 -0.8900 28 1 3.1282 1.4431 0.0598 29 1 1.7263 1.9388 -0.9184 30 1 1.6286 1.9733 0.8585 31 1 1.7443 -1.7696 1.2097 32 1 1.6122 -0.2562 2.1373 33 1 3.4366 -0.5695 3.4079 34 1 3.9183 -2.1371 2.7124 35 1 7.1336 -1.0073 4.0737 36 1 5.5400 -0.9724 4.8659 37 1 6.0226 -2.3871 3.8995 38 1 8.0727 -1.5309 0.6759 39 1 8.0866 -0.1964 1.8537 40 1 7.9630 -1.8801 2.4179 41 1 5.0216 -3.0909 -3.0149 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000251634207.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:59:01 Heat of formation + Delta-G solvation = -22.043458 kcal Electronic energy + Delta-G solvation = -20938.381069 eV Core-core repulsion = 18046.666315 eV Total energy + Delta-G solvation = -2891.714753 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 254.174 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.23767 -38.57672 -37.30684 -34.94725 -34.18713 -32.06900 -29.83410 -28.65713 -27.72462 -26.46645 -25.65139 -23.06661 -22.92262 -20.73230 -19.33777 -18.67788 -17.51952 -16.95697 -16.56859 -16.20954 -15.90333 -15.48269 -15.15548 -14.70439 -14.35679 -14.16090 -13.98882 -13.45559 -13.43424 -13.25473 -13.03247 -12.81544 -12.78777 -12.75636 -12.59231 -12.40751 -12.18899 -12.14107 -11.71403 -11.51011 -11.34552 -11.18830 -10.68140 -10.28602 -10.03288 -9.31386 -9.03695 -8.00061 -6.03091 1.39868 1.42826 1.51107 2.25204 2.43971 2.51960 3.21157 3.34728 3.95477 4.10538 4.18556 4.30734 4.40800 4.42614 4.56540 4.65999 4.67977 4.72170 4.80342 4.86661 4.88099 4.96066 5.00213 5.05449 5.06786 5.16502 5.20639 5.27787 5.37437 5.39769 5.51092 5.73838 5.80183 5.93812 5.99603 6.08742 6.30593 6.63696 6.81847 7.07387 7.56492 7.91573 9.06675 Molecular weight = 254.17amu Principal moments of inertia in cm(-1) A = 0.017286 B = 0.011140 C = 0.007447 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1619.464890 B = 2512.878785 C = 3758.754653 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.126 4.126 3 C -0.121 4.121 4 C 0.083 3.917 5 N -0.529 5.529 6 C 0.037 3.963 7 C 0.146 3.854 8 H 0.077 0.923 9 C -0.150 4.150 10 N -0.628 5.628 11 C 0.079 3.921 12 C 0.501 3.499 13 O -0.551 6.551 14 C 0.220 3.780 15 H -0.014 1.014 16 C -0.532 4.532 17 H 0.109 0.891 18 C 0.020 3.980 19 N -0.879 5.879 20 Si 0.943 3.057 21 H -0.289 1.289 22 H -0.289 1.289 23 H -0.250 1.250 24 H 0.064 0.936 25 H 0.051 0.949 26 H 0.045 0.955 27 H 0.091 0.909 28 H 0.049 0.951 29 H 0.036 0.964 30 H 0.057 0.943 31 H 0.008 0.992 32 H 0.087 0.913 33 H 0.118 0.882 34 H 0.020 0.980 35 H 0.073 0.927 36 H 0.096 0.904 37 H 0.047 0.953 38 H 0.048 0.952 39 H 0.068 0.932 40 H 0.074 0.926 41 H 0.249 0.751 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.573 5.657 13.031 14.648 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.144 4.144 3 C -0.178 4.178 4 C -0.045 4.045 5 N -0.254 5.254 6 C -0.091 4.091 7 C 0.043 3.957 8 H 0.095 0.905 9 C -0.208 4.208 10 N -0.366 5.366 11 C -0.064 4.064 12 C 0.289 3.711 13 O -0.426 6.426 14 C 0.110 3.890 15 H 0.003 0.997 16 C -0.569 4.569 17 H 0.126 0.874 18 C -0.184 4.184 19 N -0.514 5.514 20 Si 0.769 3.231 21 H -0.216 1.216 22 H -0.215 1.215 23 H -0.174 1.174 24 H 0.083 0.917 25 H 0.070 0.930 26 H 0.064 0.936 27 H 0.109 0.891 28 H 0.068 0.932 29 H 0.055 0.945 30 H 0.076 0.924 31 H 0.026 0.974 32 H 0.105 0.895 33 H 0.136 0.864 34 H 0.038 0.962 35 H 0.091 0.909 36 H 0.115 0.885 37 H 0.066 0.934 38 H 0.067 0.933 39 H 0.087 0.913 40 H 0.092 0.908 41 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges -3.015 5.810 12.337 13.966 hybrid contribution 0.080 -1.106 -1.211 1.642 sum -2.935 4.704 11.126 12.431 Atomic orbital electron populations 1.21768 0.94869 1.01020 1.01730 1.21846 0.94897 0.97274 1.00419 1.21560 1.01250 0.95130 0.99870 1.21935 0.86374 0.97196 0.98985 1.62514 1.06784 1.54146 1.01972 1.22597 0.95447 0.98081 0.92983 1.21099 0.90632 0.99180 0.84815 0.90494 1.22086 1.02170 1.00357 0.96219 1.47965 1.07316 1.68246 1.13032 1.21561 0.81033 1.01806 1.02022 1.21796 0.92718 0.75157 0.81408 1.90627 1.64832 1.47433 1.39703 1.19068 0.86404 0.91324 0.92246 0.99671 1.21698 1.38047 1.08810 0.88376 0.87374 1.25775 0.94689 0.95363 1.02547 1.70279 1.37322 1.16178 1.27642 0.85791 0.78925 0.78090 0.80295 1.21575 1.21519 1.17372 0.91732 0.92962 0.93585 0.89077 0.93166 0.94519 0.92366 0.97398 0.89495 0.86378 0.96152 0.90851 0.88517 0.93422 0.93294 0.91341 0.90775 0.94230 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.88 9.19 71.98 0.66 -3.22 16 2 C -0.13 -4.54 2.36 -10.79 -0.03 -4.56 16 3 C -0.12 -4.12 7.90 71.98 0.57 -3.55 16 4 C 0.08 2.89 4.45 86.30 0.38 3.28 16 5 N -0.53 -20.89 3.55 -880.22 -3.12 -24.01 16 6 C 0.04 1.17 4.88 86.19 0.42 1.59 16 7 C 0.15 4.38 3.54 45.03 0.16 4.54 16 8 H 0.08 2.18 8.14 -2.39 -0.02 2.16 16 9 C -0.15 -3.16 8.48 71.98 0.61 -2.55 16 10 N -0.63 -25.38 3.11 -826.23 -2.57 -27.95 16 11 C 0.08 2.71 9.61 127.77 1.23 3.93 16 12 C 0.50 26.33 7.12 87.69 0.62 26.96 16 13 O -0.55 -34.16 12.73 -3.04 -0.04 -34.20 16 14 C 0.22 11.30 1.82 43.28 0.08 11.38 16 15 H -0.01 -0.81 8.01 -2.39 -0.02 -0.83 16 16 C -0.53 -29.07 5.81 25.60 0.15 -28.92 16 17 H 0.11 5.56 3.19 -2.91 -0.01 5.55 16 18 C 0.02 1.15 4.95 84.66 0.42 1.57 16 19 N -0.88 -55.50 10.96 21.45 0.24 -55.27 16 20 Si 0.94 45.87 29.54 68.60 2.03 47.90 16 21 H -0.29 -14.32 7.11 99.48 0.71 -13.62 16 22 H -0.29 -13.96 7.11 99.48 0.71 -13.25 16 23 H -0.25 -11.15 7.11 99.48 0.71 -10.45 16 24 H 0.06 1.53 8.14 -2.39 -0.02 1.51 16 25 H 0.05 1.43 8.14 -2.39 -0.02 1.41 16 26 H 0.04 1.29 8.14 -2.38 -0.02 1.27 16 27 H 0.09 4.12 4.59 -2.39 -0.01 4.11 16 28 H 0.05 2.00 6.30 -2.39 -0.02 1.98 16 29 H 0.04 1.20 8.14 -2.39 -0.02 1.18 16 30 H 0.06 1.65 8.14 -2.39 -0.02 1.63 16 31 H 0.01 0.29 8.00 -2.39 -0.02 0.27 16 32 H 0.09 2.42 7.87 -2.39 -0.02 2.40 16 33 H 0.12 2.73 7.87 -2.39 -0.02 2.71 16 34 H 0.02 0.68 8.05 -2.39 -0.02 0.67 16 35 H 0.07 1.37 6.93 -2.39 -0.02 1.36 16 36 H 0.10 1.44 8.14 -2.39 -0.02 1.42 16 37 H 0.05 1.11 8.14 -2.39 -0.02 1.09 16 38 H 0.05 2.03 6.67 -2.39 -0.02 2.02 16 39 H 0.07 1.98 8.14 -2.38 -0.02 1.96 16 40 H 0.07 2.08 6.93 -2.39 -0.02 2.07 16 41 H 0.25 15.29 8.31 -92.70 -0.77 14.52 16 Total: -1.00 -72.74 307.31 2.80 -69.94 By element: Atomic # 1 Polarization: 12.15 SS G_CDS: 1.00 Total: 13.15 kcal Atomic # 6 Polarization: 5.17 SS G_CDS: 5.28 Total: 10.44 kcal Atomic # 7 Polarization: -101.77 SS G_CDS: -5.46 Total: -107.23 kcal Atomic # 8 Polarization: -34.16 SS G_CDS: -0.04 Total: -34.20 kcal Atomic # 14 Polarization: 45.87 SS G_CDS: 2.03 Total: 47.90 kcal Total: -72.74 2.80 -69.94 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000251634207.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.899 kcal (2) G-P(sol) polarization free energy of solvation -72.741 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.842 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.799 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.942 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.043 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds