Wall clock time and date at job start Mon Mar 30 2020 04:42:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08999 * 109.47242 * 2 1 4 4 C 1.50700 * 109.47024 * 240.00246 * 2 1 3 5 5 H 1.07998 * 120.00188 * 240.00298 * 4 2 1 6 6 C 1.37878 * 119.99997 * 59.99992 * 4 2 1 7 7 N 1.31517 * 119.99880 * 0.02562 * 6 4 2 8 8 Si 1.86800 * 119.99984 * 180.02562 * 6 4 2 9 9 H 1.48491 * 109.47261 * 0.02562 * 8 6 4 10 10 H 1.48503 * 109.47108 * 120.00398 * 8 6 4 11 11 H 1.48501 * 109.46979 * 239.99732 * 8 6 4 12 12 N 1.46502 * 109.46992 * 120.00609 * 2 1 3 13 13 C 1.46499 * 120.00327 * 59.99823 * 12 2 1 14 14 C 1.34777 * 119.99778 * 239.99422 * 12 2 1 15 15 O 1.21287 * 119.99783 * 5.06431 * 14 12 2 16 16 C 1.50694 * 120.00054 * 185.05820 * 14 12 2 17 17 C 1.53004 * 110.01780 * 299.25893 * 16 14 12 18 18 C 1.53875 * 110.03177 * 60.64873 * 16 14 12 19 19 C 1.54263 * 106.60129 * 119.33288 * 18 16 14 20 20 C 1.54898 * 104.19326 * 336.39317 * 19 18 16 21 21 C 1.54270 * 110.07698 * 177.83882 * 16 14 12 22 22 H 1.08990 * 110.48780 * 145.49164 * 21 16 14 23 23 N 1.46904 * 110.48083 * 22.97962 * 21 16 14 24 24 H 1.09004 * 109.47009 * 59.99278 * 1 2 3 25 25 H 1.08999 * 109.47242 * 180.02562 * 1 2 3 26 26 H 1.09003 * 109.47080 * 299.99764 * 1 2 3 27 27 H 0.97005 * 119.99807 * 180.02562 * 7 6 4 28 28 H 1.08999 * 109.47228 * 267.67083 * 13 12 2 29 29 H 1.09004 * 109.47113 * 27.66535 * 13 12 2 30 30 H 1.09000 * 109.47117 * 147.66190 * 13 12 2 31 31 H 1.09002 * 109.46919 * 179.97438 * 17 16 14 32 32 H 1.09004 * 109.47058 * 299.93461 * 17 16 14 33 33 H 1.08995 * 109.47295 * 59.93320 * 17 16 14 34 34 H 1.08999 * 110.03248 * 0.05012 * 18 16 14 35 35 H 1.09000 * 110.07277 * 238.64242 * 18 16 14 36 36 H 1.09004 * 110.48560 * 95.06504 * 19 18 16 37 37 H 1.08993 * 110.48818 * 217.71161 * 19 18 16 38 38 H 1.09002 * 110.75536 * 156.25570 * 20 19 18 39 39 H 1.09003 * 110.75118 * 279.62510 * 20 19 18 40 40 H 1.00906 * 110.99377 * 154.82127 * 23 21 16 41 41 H 1.00896 * 111.00414 * 278.77783 * 23 21 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6532 -1.5885 -1.1315 6 6 1.6992 -0.2392 -2.4827 7 7 0.9435 0.8304 -2.6033 8 14 2.3212 -1.1202 -4.0080 9 1 3.1453 -2.2875 -3.6040 10 1 1.1659 -1.5864 -4.8162 11 1 3.1464 -0.1871 -4.8165 12 7 2.0183 -0.6908 1.1961 13 6 1.6644 -2.0933 1.4279 14 6 2.7932 -0.0358 2.0833 15 8 3.0108 1.1487 1.9400 16 6 3.3892 -0.7753 3.2533 17 6 2.2762 -1.3562 4.1277 18 6 4.3079 -1.9031 2.7514 19 6 5.7184 -1.5980 3.2965 20 6 5.7055 -0.0699 3.5494 21 6 4.2736 0.1757 4.0860 22 1 4.2124 -0.0757 5.1447 23 7 3.8748 1.5724 3.8665 24 1 -0.3633 0.5140 -0.8900 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3633 0.5138 0.8900 27 1 0.7089 1.1616 -3.4844 28 1 0.7601 -2.1444 2.0344 29 1 1.4889 -2.5865 0.4718 30 1 2.4808 -2.5926 1.9498 31 1 2.7168 -1.8891 4.9703 32 1 1.6465 -0.5476 4.4991 33 1 1.6722 -2.0450 3.5372 34 1 4.3234 -1.9149 1.6615 35 1 3.9612 -2.8646 3.1300 36 1 5.8924 -2.1373 4.2277 37 1 6.4770 -1.8560 2.5576 38 1 6.4503 0.2043 4.2966 39 1 5.8691 0.4767 2.6206 40 1 4.1258 2.1484 4.6561 41 1 4.2757 1.9332 3.0137 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000251653074.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:42:11 Heat of formation + Delta-G solvation = -15.259045 kcal Electronic energy + Delta-G solvation = -20700.186814 eV Core-core repulsion = 17808.766255 eV Total energy + Delta-G solvation = -2891.420559 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 254.174 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.22650 -37.06507 -35.23615 -33.24384 -31.96999 -31.25635 -28.89282 -26.60333 -26.17642 -25.15615 -24.44101 -22.09522 -20.62757 -19.71275 -18.01967 -16.35363 -16.23572 -15.37511 -15.16731 -14.62567 -14.48230 -14.15237 -13.93924 -13.24322 -13.06638 -12.55159 -12.45206 -12.14646 -12.06569 -11.82104 -11.54430 -11.35079 -11.19752 -11.03620 -10.87658 -10.73265 -10.63889 -10.52352 -10.44866 -10.27061 -10.13982 -10.11119 -9.08153 -8.50867 -8.33698 -7.85112 -7.36072 -6.02568 -4.10247 3.27178 3.35078 3.37770 3.65291 4.13791 4.43894 4.62933 4.69528 4.88421 5.25769 5.28156 5.38958 5.46309 5.49925 5.60552 5.66056 5.71901 5.86694 5.93571 5.99971 6.02164 6.12161 6.14488 6.26234 6.32760 6.37220 6.48801 6.54727 6.85945 6.95296 7.18290 7.54570 7.64311 7.73760 7.81605 8.11189 8.14790 8.29347 8.74122 8.91701 9.34795 9.57732 11.02419 Molecular weight = 254.17amu Principal moments of inertia in cm(-1) A = 0.026434 B = 0.006824 C = 0.006557 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1058.990442 B = 4102.084719 C = 4269.297784 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.260 3.740 3 H 0.061 0.939 4 C -0.523 4.523 5 H 0.058 0.942 6 C 0.063 3.937 7 N -0.887 5.887 8 Si 0.896 3.104 9 H -0.274 1.274 10 H -0.284 1.284 11 H -0.284 1.284 12 N -0.596 5.596 13 C 0.075 3.925 14 C 0.525 3.475 15 O -0.526 6.526 16 C -0.078 4.078 17 C -0.146 4.146 18 C -0.117 4.117 19 C -0.119 4.119 20 C -0.158 4.158 21 C 0.110 3.890 22 H 0.076 0.924 23 N -0.817 5.817 24 H 0.090 0.910 25 H 0.027 0.973 26 H 0.010 0.990 27 H 0.262 0.738 28 H 0.040 0.960 29 H 0.075 0.925 30 H 0.063 0.937 31 H 0.055 0.945 32 H 0.060 0.940 33 H 0.071 0.929 34 H 0.075 0.925 35 H 0.071 0.929 36 H 0.063 0.937 37 H 0.064 0.936 38 H 0.061 0.939 39 H 0.071 0.929 40 H 0.310 0.690 41 H 0.364 0.636 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.792 -6.040 12.538 15.074 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.160 3.840 3 H 0.079 0.921 4 C -0.561 4.561 5 H 0.076 0.924 6 C -0.139 4.139 7 N -0.526 5.526 8 Si 0.724 3.276 9 H -0.199 1.199 10 H -0.210 1.210 11 H -0.210 1.210 12 N -0.328 5.328 13 C -0.069 4.069 14 C 0.311 3.689 15 O -0.402 6.402 16 C -0.082 4.082 17 C -0.203 4.203 18 C -0.155 4.155 19 C -0.158 4.158 20 C -0.198 4.198 21 C -0.003 4.003 22 H 0.094 0.906 23 N -0.354 5.354 24 H 0.109 0.891 25 H 0.046 0.954 26 H 0.029 0.971 27 H 0.072 0.928 28 H 0.058 0.942 29 H 0.093 0.907 30 H 0.081 0.919 31 H 0.074 0.926 32 H 0.079 0.921 33 H 0.090 0.910 34 H 0.094 0.906 35 H 0.089 0.911 36 H 0.082 0.918 37 H 0.082 0.918 38 H 0.079 0.921 39 H 0.090 0.910 40 H 0.122 0.878 41 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges 5.051 -5.534 12.213 14.328 hybrid contribution 1.222 -0.463 -0.841 1.554 sum 6.274 -5.997 11.372 14.306 Atomic orbital electron populations 1.22065 0.98533 0.99151 1.00631 1.18844 0.90739 0.94405 0.80021 0.92085 1.21391 1.31491 1.12836 0.90421 0.92353 1.24898 0.95055 0.95010 0.98901 1.69904 1.36524 1.22661 1.23487 0.86484 0.78586 0.79588 0.82977 1.19877 1.20983 1.20995 1.48144 1.49816 1.11316 1.23537 1.21907 0.98937 0.84137 1.01921 1.20069 0.79021 0.87131 0.82663 1.90404 1.60600 1.15148 1.74049 1.21426 0.96099 0.95535 0.95165 1.22116 0.97971 1.01192 0.99050 1.22339 0.94171 0.97283 1.01742 1.22248 0.97011 0.95940 1.00553 1.23332 0.98321 0.96856 1.01279 1.22064 0.90604 0.90239 0.97390 0.90563 1.59302 1.67628 1.01067 1.07377 0.89098 0.95406 0.97053 0.92843 0.94180 0.90660 0.91890 0.92601 0.92138 0.90981 0.90630 0.91085 0.91806 0.91767 0.92061 0.91050 0.87827 0.81367 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.60 8.97 37.16 0.33 -3.27 16 2 C 0.26 6.75 2.63 -69.08 -0.18 6.57 16 3 H 0.06 1.84 6.91 -51.93 -0.36 1.48 16 4 C -0.52 -14.21 7.97 -34.44 -0.27 -14.48 16 5 H 0.06 1.56 7.37 -52.49 -0.39 1.18 16 6 C 0.06 1.75 5.30 -17.82 -0.09 1.65 16 7 N -0.89 -25.43 11.32 55.43 0.63 -24.80 16 8 Si 0.90 21.18 29.54 -169.99 -5.02 16.16 16 9 H -0.27 -6.36 7.11 56.52 0.40 -5.96 16 10 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 11 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 12 N -0.60 -12.90 2.69 -175.26 -0.47 -13.37 16 13 C 0.07 1.31 7.47 59.85 0.45 1.75 16 14 C 0.52 10.92 6.19 -10.99 -0.07 10.85 16 15 O -0.53 -12.56 11.81 5.55 0.07 -12.49 16 16 C -0.08 -1.22 0.59 -154.54 -0.09 -1.31 16 17 C -0.15 -1.98 7.83 37.16 0.29 -1.69 16 18 C -0.12 -1.61 4.26 -25.61 -0.11 -1.72 16 19 C -0.12 -1.42 6.83 -25.07 -0.17 -1.60 16 20 C -0.16 -2.06 6.47 -24.74 -0.16 -2.22 16 21 C 0.11 1.57 3.44 -66.05 -0.23 1.35 16 22 H 0.08 0.96 7.85 -51.93 -0.41 0.55 16 23 N -0.82 -13.14 7.48 -3.26 -0.02 -13.17 16 24 H 0.09 2.46 6.07 -51.93 -0.32 2.14 16 25 H 0.03 0.63 7.67 -51.93 -0.40 0.23 16 26 H 0.01 0.25 8.14 -51.93 -0.42 -0.17 16 27 H 0.26 7.11 8.31 -40.82 -0.34 6.77 16 28 H 0.04 0.64 7.07 -51.93 -0.37 0.27 16 29 H 0.07 1.40 7.05 -51.93 -0.37 1.03 16 30 H 0.06 0.92 3.73 -51.93 -0.19 0.73 16 31 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 32 H 0.06 0.90 8.14 -51.93 -0.42 0.47 16 33 H 0.07 0.95 4.40 -51.93 -0.23 0.72 16 34 H 0.08 1.22 7.06 -51.93 -0.37 0.86 16 35 H 0.07 0.82 7.10 -51.93 -0.37 0.45 16 36 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 37 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 38 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 39 H 0.07 1.07 7.79 -51.93 -0.40 0.67 16 40 H 0.31 4.13 9.08 -39.29 -0.36 3.77 16 41 H 0.36 6.54 6.31 -39.29 -0.25 6.29 16 LS Contribution 304.72 15.07 4.59 4.59 Total: -1.00 -30.30 304.72 -6.98 -37.28 By element: Atomic # 1 Polarization: 16.34 SS G_CDS: -6.44 Total: 9.90 kcal Atomic # 6 Polarization: -3.80 SS G_CDS: -0.31 Total: -4.11 kcal Atomic # 7 Polarization: -51.46 SS G_CDS: 0.13 Total: -51.33 kcal Atomic # 8 Polarization: -12.56 SS G_CDS: 0.07 Total: -12.49 kcal Atomic # 14 Polarization: 21.18 SS G_CDS: -5.02 Total: 16.16 kcal Total LS contribution 4.59 Total: 4.59 kcal Total: -30.30 -6.98 -37.28 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000251653074.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.018 kcal (2) G-P(sol) polarization free energy of solvation -30.302 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.283 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.976 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.277 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.259 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds