Wall clock time and date at job start Mon Mar 30 2020 04:42:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08999 * 109.47242 * 2 1 4 4 C 1.50700 * 109.47024 * 240.00246 * 2 1 3 5 5 H 1.07998 * 120.00188 * 240.00298 * 4 2 1 6 6 C 1.37878 * 119.99997 * 59.99992 * 4 2 1 7 7 N 1.31517 * 119.99880 * 0.02562 * 6 4 2 8 8 Si 1.86800 * 119.99984 * 180.02562 * 6 4 2 9 9 H 1.48491 * 109.47261 * 0.02562 * 8 6 4 10 10 H 1.48503 * 109.47108 * 120.00398 * 8 6 4 11 11 H 1.48501 * 109.46979 * 239.99732 * 8 6 4 12 12 N 1.46502 * 109.46992 * 120.00609 * 2 1 3 13 13 C 1.46499 * 120.00327 * 59.99823 * 12 2 1 14 14 C 1.34777 * 119.99778 * 239.99422 * 12 2 1 15 15 O 1.21287 * 119.99783 * 5.06431 * 14 12 2 16 16 C 1.50694 * 120.00054 * 185.05820 * 14 12 2 17 17 C 1.53004 * 110.01780 * 299.25893 * 16 14 12 18 18 C 1.53875 * 110.03177 * 60.64873 * 16 14 12 19 19 C 1.54263 * 106.60129 * 119.33288 * 18 16 14 20 20 C 1.54898 * 104.19326 * 336.39317 * 19 18 16 21 21 C 1.54270 * 110.07698 * 177.83882 * 16 14 12 22 22 H 1.08990 * 110.48780 * 145.49164 * 21 16 14 23 23 N 1.46904 * 110.48083 * 22.97962 * 21 16 14 24 24 H 1.09004 * 109.47009 * 59.99278 * 1 2 3 25 25 H 1.08999 * 109.47242 * 180.02562 * 1 2 3 26 26 H 1.09003 * 109.47080 * 299.99764 * 1 2 3 27 27 H 0.97005 * 119.99807 * 180.02562 * 7 6 4 28 28 H 1.08999 * 109.47228 * 267.67083 * 13 12 2 29 29 H 1.09004 * 109.47113 * 27.66535 * 13 12 2 30 30 H 1.09000 * 109.47117 * 147.66190 * 13 12 2 31 31 H 1.09002 * 109.46919 * 179.97438 * 17 16 14 32 32 H 1.09004 * 109.47058 * 299.93461 * 17 16 14 33 33 H 1.08995 * 109.47295 * 59.93320 * 17 16 14 34 34 H 1.08999 * 110.03248 * 0.05012 * 18 16 14 35 35 H 1.09000 * 110.07277 * 238.64242 * 18 16 14 36 36 H 1.09004 * 110.48560 * 95.06504 * 19 18 16 37 37 H 1.08993 * 110.48818 * 217.71161 * 19 18 16 38 38 H 1.09002 * 110.75536 * 156.25570 * 20 19 18 39 39 H 1.09003 * 110.75118 * 279.62510 * 20 19 18 40 40 H 1.00906 * 110.99377 * 154.82127 * 23 21 16 41 41 H 1.00896 * 111.00414 * 278.77783 * 23 21 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6532 -1.5885 -1.1315 6 6 1.6992 -0.2392 -2.4827 7 7 0.9435 0.8304 -2.6033 8 14 2.3212 -1.1202 -4.0080 9 1 3.1453 -2.2875 -3.6040 10 1 1.1659 -1.5864 -4.8162 11 1 3.1464 -0.1871 -4.8165 12 7 2.0183 -0.6908 1.1961 13 6 1.6644 -2.0933 1.4279 14 6 2.7932 -0.0358 2.0833 15 8 3.0108 1.1487 1.9400 16 6 3.3892 -0.7753 3.2533 17 6 2.2762 -1.3562 4.1277 18 6 4.3079 -1.9031 2.7514 19 6 5.7184 -1.5980 3.2965 20 6 5.7055 -0.0699 3.5494 21 6 4.2736 0.1757 4.0860 22 1 4.2124 -0.0757 5.1447 23 7 3.8748 1.5724 3.8665 24 1 -0.3633 0.5140 -0.8900 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3633 0.5138 0.8900 27 1 0.7089 1.1616 -3.4844 28 1 0.7601 -2.1444 2.0344 29 1 1.4889 -2.5865 0.4718 30 1 2.4808 -2.5926 1.9498 31 1 2.7168 -1.8891 4.9703 32 1 1.6465 -0.5476 4.4991 33 1 1.6722 -2.0450 3.5372 34 1 4.3234 -1.9149 1.6615 35 1 3.9612 -2.8646 3.1300 36 1 5.8924 -2.1373 4.2277 37 1 6.4770 -1.8560 2.5576 38 1 6.4503 0.2043 4.2966 39 1 5.8691 0.4767 2.6206 40 1 4.1258 2.1484 4.6561 41 1 4.2757 1.9332 3.0137 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000251653074.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:42:10 Heat of formation + Delta-G solvation = -35.840143 kcal Electronic energy + Delta-G solvation = -20701.079278 eV Core-core repulsion = 17808.766255 eV Total energy + Delta-G solvation = -2892.313022 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 254.174 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.60937 -38.51426 -36.96202 -35.04344 -33.36303 -32.54894 -30.68497 -27.87821 -27.49069 -27.28344 -25.63170 -23.73103 -21.68715 -21.30223 -19.57439 -18.36544 -17.58844 -17.10473 -16.45617 -16.26278 -15.85806 -15.57801 -15.29347 -14.73455 -14.42860 -14.29350 -13.69794 -13.56216 -13.48043 -13.20281 -13.06338 -12.97944 -12.74732 -12.71826 -12.53950 -12.27524 -12.17663 -12.08647 -11.80227 -11.64067 -11.55131 -11.43855 -11.13725 -10.55371 -9.95399 -9.22147 -9.00691 -8.12844 -6.29498 1.39623 1.40861 1.52440 2.08472 2.37439 2.62263 3.14222 3.48048 3.60204 3.78978 4.14505 4.22989 4.38035 4.43782 4.49053 4.55563 4.58038 4.72135 4.74260 4.79590 4.90718 4.91621 4.97045 5.02083 5.08781 5.10576 5.16286 5.23013 5.26175 5.37593 5.46561 5.51361 5.67488 5.74085 6.11238 6.20548 6.55386 6.80926 6.87809 7.07717 7.38152 7.76951 8.91281 Molecular weight = 254.17amu Principal moments of inertia in cm(-1) A = 0.026434 B = 0.006824 C = 0.006557 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1058.990442 B = 4102.084719 C = 4269.297784 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C 0.266 3.734 3 H 0.006 0.994 4 C -0.533 4.533 5 H 0.060 0.940 6 C 0.012 3.988 7 N -0.919 5.919 8 Si 0.964 3.036 9 H -0.264 1.264 10 H -0.275 1.275 11 H -0.286 1.286 12 N -0.606 5.606 13 C 0.074 3.926 14 C 0.510 3.490 15 O -0.568 6.568 16 C -0.074 4.074 17 C -0.142 4.142 18 C -0.117 4.117 19 C -0.112 4.112 20 C -0.156 4.156 21 C 0.107 3.893 22 H 0.105 0.895 23 N -0.836 5.836 24 H 0.065 0.935 25 H 0.043 0.957 26 H 0.014 0.986 27 H 0.263 0.737 28 H 0.059 0.941 29 H 0.062 0.938 30 H 0.095 0.905 31 H 0.093 0.907 32 H 0.042 0.958 33 H 0.076 0.924 34 H 0.044 0.956 35 H 0.104 0.896 36 H 0.097 0.903 37 H 0.065 0.935 38 H 0.085 0.915 39 H 0.038 0.962 40 H 0.324 0.676 41 H 0.349 0.651 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.775 -8.810 14.212 18.041 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.163 3.837 3 H 0.024 0.976 4 C -0.572 4.572 5 H 0.078 0.922 6 C -0.187 4.187 7 N -0.558 5.558 8 Si 0.789 3.211 9 H -0.188 1.188 10 H -0.200 1.200 11 H -0.212 1.212 12 N -0.337 5.337 13 C -0.069 4.069 14 C 0.299 3.701 15 O -0.447 6.447 16 C -0.078 4.078 17 C -0.199 4.199 18 C -0.155 4.155 19 C -0.150 4.150 20 C -0.195 4.195 21 C -0.006 4.006 22 H 0.123 0.877 23 N -0.372 5.372 24 H 0.084 0.916 25 H 0.062 0.938 26 H 0.033 0.967 27 H 0.072 0.928 28 H 0.077 0.923 29 H 0.080 0.920 30 H 0.113 0.887 31 H 0.112 0.888 32 H 0.061 0.939 33 H 0.094 0.906 34 H 0.063 0.937 35 H 0.122 0.878 36 H 0.115 0.885 37 H 0.083 0.917 38 H 0.103 0.897 39 H 0.057 0.943 40 H 0.137 0.863 41 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges 6.033 -8.341 13.928 17.320 hybrid contribution 0.914 0.475 -1.327 1.680 sum 6.947 -7.866 12.601 16.399 Atomic orbital electron populations 1.21856 0.97873 0.99687 0.99493 1.18399 0.91163 0.92093 0.82008 0.97622 1.21622 1.31508 1.12843 0.91191 0.92214 1.25757 0.95182 0.95680 1.02049 1.70050 1.37539 1.24019 1.24218 0.85421 0.78209 0.78515 0.78955 1.18806 1.20047 1.21177 1.48150 1.50172 1.12910 1.22493 1.22123 1.01051 0.81712 1.01990 1.21204 0.78209 0.87114 0.83619 1.90403 1.61695 1.17286 1.75294 1.21499 0.97110 0.96041 0.93178 1.22123 0.97147 1.00835 0.99825 1.22354 0.95159 0.97967 0.99984 1.22265 0.95685 0.95030 1.02053 1.23274 0.98230 0.97645 1.00367 1.22239 0.90862 0.88852 0.98629 0.87725 1.59182 1.68208 1.02543 1.07260 0.91637 0.93810 0.96708 0.92763 0.92278 0.91968 0.88670 0.88799 0.93899 0.90580 0.93690 0.87804 0.88481 0.91657 0.89671 0.94317 0.86308 0.83067 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.65 8.97 71.98 0.65 -6.01 16 2 C 0.27 14.34 2.63 44.24 0.12 14.46 16 3 H 0.01 0.37 6.91 -2.39 -0.02 0.36 16 4 C -0.53 -29.63 7.97 25.60 0.20 -29.43 16 5 H 0.06 3.23 7.37 -2.91 -0.02 3.20 16 6 C 0.01 0.70 5.30 84.65 0.45 1.14 16 7 N -0.92 -54.32 11.32 21.45 0.24 -54.07 16 8 Si 0.96 43.78 29.54 68.60 2.03 45.81 16 9 H -0.26 -11.46 7.11 99.48 0.71 -10.75 16 10 H -0.27 -12.04 7.11 99.48 0.71 -11.34 16 11 H -0.29 -12.99 7.11 99.48 0.71 -12.28 16 12 N -0.61 -26.54 2.69 -826.79 -2.22 -28.76 16 13 C 0.07 2.46 7.47 127.77 0.95 3.41 16 14 C 0.51 21.54 6.19 87.65 0.54 22.09 16 15 O -0.57 -28.54 11.81 -3.05 -0.04 -28.58 16 16 C -0.07 -2.17 0.59 -52.20 -0.03 -2.20 16 17 C -0.14 -3.37 7.83 71.98 0.56 -2.80 16 18 C -0.12 -2.85 4.26 31.32 0.13 -2.72 16 19 C -0.11 -2.28 6.83 31.67 0.22 -2.07 16 20 C -0.16 -3.74 6.47 31.89 0.21 -3.53 16 21 C 0.11 2.83 3.44 45.99 0.16 2.99 16 22 H 0.10 2.20 7.85 -2.39 -0.02 2.18 16 23 N -0.84 -27.00 7.48 -164.24 -1.23 -28.23 16 24 H 0.06 3.68 6.07 -2.38 -0.01 3.66 16 25 H 0.04 2.03 7.67 -2.39 -0.02 2.01 16 26 H 0.01 0.69 8.14 -2.39 -0.02 0.67 16 27 H 0.26 14.69 8.31 -92.70 -0.77 13.92 16 28 H 0.06 1.75 7.07 -2.39 -0.02 1.73 16 29 H 0.06 2.24 7.05 -2.39 -0.02 2.22 16 30 H 0.10 2.53 3.73 -2.39 -0.01 2.52 16 31 H 0.09 1.54 8.14 -2.39 -0.02 1.52 16 32 H 0.04 1.17 8.14 -2.38 -0.02 1.15 16 33 H 0.08 1.72 4.40 -2.39 -0.01 1.71 16 34 H 0.04 1.39 7.06 -2.39 -0.02 1.37 16 35 H 0.10 1.86 7.10 -2.39 -0.02 1.84 16 36 H 0.10 1.39 8.14 -2.38 -0.02 1.37 16 37 H 0.06 1.33 8.14 -2.39 -0.02 1.31 16 38 H 0.08 1.62 8.14 -2.39 -0.02 1.60 16 39 H 0.04 1.17 7.79 -2.39 -0.02 1.15 16 40 H 0.32 8.50 9.08 -89.69 -0.81 7.68 16 41 H 0.35 13.19 6.31 -89.70 -0.57 12.62 16 Total: -1.00 -69.65 304.72 2.60 -67.05 By element: Atomic # 1 Polarization: 31.78 SS G_CDS: -0.34 Total: 31.44 kcal Atomic # 6 Polarization: -8.82 SS G_CDS: 4.16 Total: -4.66 kcal Atomic # 7 Polarization: -107.85 SS G_CDS: -3.21 Total: -111.06 kcal Atomic # 8 Polarization: -28.54 SS G_CDS: -0.04 Total: -28.58 kcal Atomic # 14 Polarization: 43.78 SS G_CDS: 2.03 Total: 45.81 kcal Total: -69.65 2.60 -67.05 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000251653074.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.213 kcal (2) G-P(sol) polarization free energy of solvation -69.654 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.440 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.600 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.054 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.840 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds