Wall clock time and date at job start Mon Mar 30 2020 04:43:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09003 * 109.46722 * 2 1 4 4 C 1.50693 * 109.47310 * 119.99816 * 2 1 3 5 5 H 1.07999 * 120.00072 * 119.99867 * 4 2 1 6 6 C 1.37879 * 119.99896 * 300.00680 * 4 2 1 7 7 N 1.31511 * 120.00135 * 359.97438 * 6 4 2 8 8 Si 1.86806 * 119.99828 * 180.02562 * 6 4 2 9 9 H 1.48501 * 109.47438 * 59.99712 * 8 6 4 10 10 H 1.48502 * 109.47019 * 179.97438 * 8 6 4 11 11 H 1.48500 * 109.46849 * 299.99458 * 8 6 4 12 12 N 1.46503 * 109.47168 * 240.00127 * 2 1 3 13 13 C 1.46499 * 119.99695 * 299.99645 * 12 2 1 14 14 C 1.34773 * 119.99714 * 119.99709 * 12 2 1 15 15 O 1.21287 * 120.00238 * 0.02562 * 14 12 2 16 16 C 1.50701 * 119.99820 * 179.97438 * 14 12 2 17 17 C 1.52997 * 109.47302 * 185.63652 * 16 14 12 18 18 H 1.08994 * 109.88181 * 304.82737 * 17 16 14 19 19 C 1.54320 * 110.02675 * 65.94368 * 17 16 14 20 20 C 1.55427 * 103.05018 * 141.76413 * 19 17 16 21 21 C 1.54902 * 101.52040 * 324.36829 * 20 19 17 22 22 N 1.47441 * 109.89197 * 183.79173 * 17 16 14 23 23 C 1.46901 * 110.99807 * 3.69274 * 22 17 16 24 24 H 1.09006 * 109.47216 * 60.00372 * 1 2 3 25 25 H 1.09003 * 109.46722 * 179.97438 * 1 2 3 26 26 H 1.08994 * 109.47380 * 300.00092 * 1 2 3 27 27 H 0.97004 * 119.99975 * 180.02562 * 7 6 4 28 28 H 1.08997 * 109.47020 * 270.00085 * 13 12 2 29 29 H 1.08997 * 109.47150 * 30.00585 * 13 12 2 30 30 H 1.09003 * 109.46311 * 150.00556 * 13 12 2 31 31 H 1.08996 * 109.47284 * 65.63318 * 16 14 12 32 32 H 1.09005 * 109.46843 * 305.63768 * 16 14 12 33 33 H 1.09002 * 110.70885 * 260.15054 * 19 17 16 34 34 H 1.09001 * 110.70634 * 23.20836 * 19 17 16 35 35 H 1.08994 * 111.10961 * 206.29739 * 20 19 17 36 36 H 1.09005 * 111.00083 * 82.39109 * 20 19 17 37 37 H 1.08998 * 110.37543 * 278.17633 * 21 20 19 38 38 H 1.09001 * 110.37413 * 155.94434 * 21 20 19 39 39 H 1.09007 * 109.46994 * 301.37113 * 23 22 17 40 40 H 1.08996 * 109.47263 * 61.37333 * 23 22 17 41 41 H 1.09006 * 109.47476 * 181.37429 * 23 22 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7103 1.2304 5 1 2.6533 -1.5884 1.1313 6 6 1.6992 -0.2393 2.4827 7 7 0.9434 0.8302 2.6033 8 14 2.3225 -1.1194 4.0079 9 1 3.8075 -1.1188 4.0078 10 1 1.8278 -0.4192 5.2204 11 1 1.8281 -2.5197 4.0081 12 7 2.0184 -0.6906 -1.1962 13 6 1.6645 -2.0932 -1.4280 14 6 2.7932 -0.0355 -2.0833 15 8 3.0865 1.1255 -1.8911 16 6 3.2960 -0.7460 -3.3135 17 6 4.2582 0.1690 -4.0735 18 1 3.7696 1.1175 -4.2963 19 6 5.5274 0.4175 -3.2315 20 6 6.6608 0.4115 -4.2949 21 6 6.1516 -0.6666 -5.2838 22 7 4.6854 -0.4815 -5.3258 23 6 3.9978 -1.7661 -5.5128 24 1 -0.3634 0.5138 -0.8901 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3634 0.5138 0.8899 27 1 0.7093 1.1618 3.4844 28 1 2.4158 -2.7376 -0.9716 29 1 0.6905 -2.3002 -0.9847 30 1 1.6240 -2.2851 -2.5002 31 1 2.4532 -1.0009 -3.9559 32 1 3.8170 -1.6572 -3.0193 33 1 5.4744 1.3840 -2.7304 34 1 5.6717 -0.3835 -2.5064 35 1 7.6125 0.1173 -3.8526 36 1 6.7429 1.3823 -4.7839 37 1 6.3980 -1.6635 -4.9183 38 1 6.5825 -0.5085 -6.2725 39 1 4.2108 -2.4189 -4.6662 40 1 2.9231 -1.5966 -5.5796 41 1 4.3492 -2.2361 -6.4314 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260018713.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:43:40 Heat of formation + Delta-G solvation = -48.015243 kcal Electronic energy + Delta-G solvation = -19905.506572 eV Core-core repulsion = 17012.665597 eV Total energy + Delta-G solvation = -2892.840974 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 254.174 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.25647 -39.65634 -37.10298 -34.84509 -33.23369 -32.57737 -31.05656 -27.66903 -27.35751 -27.03014 -26.47465 -23.17354 -22.16514 -20.81280 -19.65241 -18.54824 -18.07106 -17.39145 -16.76388 -16.52209 -16.28872 -15.84109 -15.17163 -14.63444 -14.53438 -14.35571 -14.17058 -13.63694 -13.48509 -13.45743 -13.14699 -13.00421 -12.90325 -12.68385 -12.61627 -12.25531 -12.24140 -12.17789 -12.12863 -11.94061 -11.71285 -11.61478 -11.19310 -10.63729 -10.44776 -9.32214 -9.23089 -8.15076 -6.32031 1.40018 1.42374 1.49883 1.82937 2.30738 2.48257 3.06806 3.12451 3.64867 3.74438 3.82335 3.89558 4.24430 4.30983 4.33371 4.48385 4.57752 4.59592 4.66689 4.68533 4.71948 4.78792 4.87651 4.96268 5.01898 5.04611 5.06482 5.08482 5.12079 5.22093 5.37853 5.45610 5.62289 5.67311 5.99639 6.03682 6.15498 6.16431 6.75918 6.85798 7.32597 7.50683 8.88921 Molecular weight = 254.17amu Principal moments of inertia in cm(-1) A = 0.030185 B = 0.005295 C = 0.005049 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 927.389554 B = 5286.468956 C = 5544.380086 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.261 3.739 3 H 0.007 0.993 4 C -0.538 4.538 5 H 0.059 0.941 6 C 0.015 3.985 7 N -0.918 5.918 8 Si 0.964 3.036 9 H -0.278 1.278 10 H -0.283 1.283 11 H -0.262 1.262 12 N -0.604 5.604 13 C 0.083 3.917 14 C 0.494 3.506 15 O -0.599 6.599 16 C -0.138 4.138 17 C 0.093 3.907 18 H 0.067 0.933 19 C -0.133 4.133 20 C -0.125 4.125 21 C 0.042 3.958 22 N -0.538 5.538 23 C 0.008 3.992 24 H 0.019 0.981 25 H 0.048 0.952 26 H 0.066 0.934 27 H 0.264 0.736 28 H 0.053 0.947 29 H 0.069 0.931 30 H 0.094 0.906 31 H 0.120 0.880 32 H 0.106 0.894 33 H 0.052 0.948 34 H 0.055 0.945 35 H 0.087 0.913 36 H 0.074 0.926 37 H 0.056 0.944 38 H 0.094 0.906 39 H 0.039 0.961 40 H 0.075 0.925 41 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.488 -9.063 -14.730 18.471 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.158 3.842 3 H 0.025 0.975 4 C -0.577 4.577 5 H 0.077 0.923 6 C -0.185 4.185 7 N -0.557 5.557 8 Si 0.789 3.211 9 H -0.204 1.204 10 H -0.209 1.209 11 H -0.186 1.186 12 N -0.334 5.334 13 C -0.059 4.059 14 C 0.283 3.717 15 O -0.481 6.481 16 C -0.178 4.178 17 C -0.016 4.016 18 H 0.085 0.915 19 C -0.172 4.172 20 C -0.163 4.163 21 C -0.085 4.085 22 N -0.262 5.262 23 C -0.139 4.139 24 H 0.038 0.962 25 H 0.067 0.933 26 H 0.085 0.915 27 H 0.073 0.927 28 H 0.072 0.928 29 H 0.088 0.912 30 H 0.113 0.887 31 H 0.138 0.862 32 H 0.124 0.876 33 H 0.071 0.929 34 H 0.074 0.926 35 H 0.106 0.894 36 H 0.092 0.908 37 H 0.074 0.926 38 H 0.112 0.888 39 H 0.058 0.942 40 H 0.094 0.906 41 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 6.392 -8.073 -14.924 18.132 hybrid contribution 0.192 -0.373 1.999 2.042 sum 6.584 -8.446 -12.925 16.785 Atomic orbital electron populations 1.21877 0.97245 1.00085 0.99885 1.18507 0.91579 0.92190 0.81887 0.97473 1.21534 1.31915 1.13010 0.91219 0.92310 1.25744 0.95081 0.95643 1.02034 1.70019 1.37308 1.23866 1.24463 0.85520 0.78345 0.79025 0.78177 1.20365 1.20865 1.18645 1.48262 1.49301 1.13384 1.22479 1.21793 1.01442 0.80449 1.02195 1.21294 0.78197 0.86837 0.85372 1.90618 1.59789 1.19550 1.78128 1.22295 1.01626 0.99869 0.94018 1.21995 0.94569 0.96993 0.88029 0.91491 1.22777 0.95203 1.01441 0.97798 1.22761 0.97805 0.99979 0.95714 1.23137 0.87049 0.97992 1.00351 1.63824 1.06123 1.23453 1.32814 1.22728 1.00081 0.89502 1.01628 0.96179 0.93315 0.91485 0.92651 0.92818 0.91189 0.88715 0.86188 0.87577 0.92924 0.92595 0.89440 0.90753 0.92580 0.88775 0.94248 0.90612 0.90004 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.47 8.95 71.98 0.64 -5.83 16 2 C 0.26 13.77 2.63 44.24 0.12 13.89 16 3 H 0.01 0.46 6.90 -2.39 -0.02 0.45 16 4 C -0.54 -29.58 8.37 25.60 0.21 -29.36 16 5 H 0.06 3.13 7.65 -2.91 -0.02 3.11 16 6 C 0.01 0.80 5.30 84.66 0.45 1.25 16 7 N -0.92 -53.50 11.32 21.45 0.24 -53.26 16 8 Si 0.96 43.29 29.54 68.60 2.03 45.32 16 9 H -0.28 -12.43 7.11 99.48 0.71 -11.72 16 10 H -0.28 -12.50 7.11 99.48 0.71 -11.80 16 11 H -0.26 -11.06 7.11 99.48 0.71 -10.35 16 12 N -0.60 -25.59 2.75 -826.80 -2.28 -27.86 16 13 C 0.08 2.58 9.38 127.77 1.20 3.78 16 14 C 0.49 20.36 7.38 87.66 0.65 21.00 16 15 O -0.60 -30.44 14.27 -3.05 -0.04 -30.48 16 16 C -0.14 -3.86 2.30 29.85 0.07 -3.79 16 17 C 0.09 2.67 3.08 45.26 0.14 2.81 16 18 H 0.07 2.30 7.89 -2.39 -0.02 2.29 16 19 C -0.13 -3.97 5.50 31.88 0.18 -3.80 16 20 C -0.12 -2.71 7.10 32.08 0.23 -2.48 16 21 C 0.04 0.80 6.72 86.77 0.58 1.38 16 22 N -0.54 -12.19 5.44 -886.56 -4.83 -17.02 16 23 C 0.01 0.14 8.26 127.69 1.05 1.20 16 24 H 0.02 0.89 8.14 -2.38 -0.02 0.87 16 25 H 0.05 2.14 6.66 -2.39 -0.02 2.12 16 26 H 0.07 3.64 6.07 -2.39 -0.01 3.63 16 27 H 0.26 14.63 8.31 -92.71 -0.77 13.86 16 28 H 0.05 1.59 8.14 -2.39 -0.02 1.57 16 29 H 0.07 2.21 6.43 -2.39 -0.02 2.19 16 30 H 0.09 2.08 6.60 -2.39 -0.02 2.06 16 31 H 0.12 2.75 5.92 -2.39 -0.01 2.73 16 32 H 0.11 2.57 6.66 -2.38 -0.02 2.55 16 33 H 0.05 1.88 7.76 -2.39 -0.02 1.86 16 34 H 0.06 1.71 7.80 -2.39 -0.02 1.69 16 35 H 0.09 1.61 8.14 -2.39 -0.02 1.59 16 36 H 0.07 1.61 8.14 -2.38 -0.02 1.59 16 37 H 0.06 0.95 7.80 -2.39 -0.02 0.93 16 38 H 0.09 1.50 8.14 -2.39 -0.02 1.48 16 39 H 0.04 0.63 6.52 -2.38 -0.02 0.61 16 40 H 0.08 1.22 6.71 -2.39 -0.02 1.21 16 41 H 0.08 1.12 8.14 -2.38 -0.02 1.10 16 Total: -1.00 -69.26 314.16 1.64 -67.62 By element: Atomic # 1 Polarization: 14.64 SS G_CDS: 1.00 Total: 15.63 kcal Atomic # 6 Polarization: -5.47 SS G_CDS: 5.52 Total: 0.05 kcal Atomic # 7 Polarization: -91.28 SS G_CDS: -6.86 Total: -98.14 kcal Atomic # 8 Polarization: -30.44 SS G_CDS: -0.04 Total: -30.48 kcal Atomic # 14 Polarization: 43.29 SS G_CDS: 2.03 Total: 45.32 kcal Total: -69.26 1.64 -67.62 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260018713.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.609 kcal (2) G-P(sol) polarization free energy of solvation -69.262 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.654 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.639 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.624 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.015 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds