Wall clock time and date at job start Mon Mar 30 2020 04:46:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46897 * 1 3 3 C 1.46895 * 110.99987 * 2 1 4 4 C 1.50699 * 109.47338 * 301.78663 * 3 2 1 5 5 O 1.21283 * 119.99929 * 139.34871 * 4 3 2 6 6 N 1.34777 * 119.99850 * 319.35459 * 4 3 2 7 7 C 1.46505 * 119.99702 * 174.98826 * 6 4 3 8 8 H 1.08998 * 109.47315 * 324.99127 * 7 6 4 9 9 C 1.52992 * 109.47300 * 84.99910 * 7 6 4 10 10 C 1.50709 * 109.46679 * 204.99580 * 7 6 4 11 11 H 1.08005 * 119.99738 * 359.97438 * 10 7 6 12 12 C 1.37870 * 119.99583 * 179.97438 * 10 7 6 13 13 N 1.31518 * 120.00445 * 0.02562 * 12 10 7 14 14 Si 1.86805 * 119.99582 * 180.02562 * 12 10 7 15 15 H 1.48500 * 109.47196 * 60.00300 * 14 12 10 16 16 H 1.48500 * 109.46883 * 180.02562 * 14 12 10 17 17 H 1.48494 * 109.47188 * 299.99820 * 14 12 10 18 18 C 1.53003 * 109.47507 * 61.78808 * 3 2 1 19 19 C 1.52992 * 109.47635 * 179.97438 * 18 3 2 20 20 C 1.53000 * 109.47164 * 300.00306 * 19 18 3 21 21 C 1.52995 * 109.47224 * 59.99559 * 20 19 18 22 22 C 1.52997 * 109.47184 * 300.00027 * 21 20 19 23 23 H 1.08997 * 109.47394 * 54.92793 * 1 2 3 24 24 H 1.08999 * 109.47486 * 174.93461 * 1 2 3 25 25 H 1.09003 * 109.47137 * 294.93156 * 1 2 3 26 26 H 1.00898 * 111.00132 * 236.04451 * 2 1 3 27 27 H 0.97001 * 119.99958 * 354.98198 * 6 4 3 28 28 H 1.09004 * 109.46940 * 299.99486 * 9 7 6 29 29 H 1.09002 * 109.47331 * 180.02562 * 9 7 6 30 30 H 1.08998 * 109.47576 * 59.99376 * 9 7 6 31 31 H 0.96997 * 119.99871 * 180.02562 * 13 12 10 32 32 H 1.09004 * 109.46650 * 300.00260 * 18 3 2 33 33 H 1.09006 * 109.46774 * 59.99456 * 18 3 2 34 34 H 1.08993 * 109.47605 * 179.97438 * 19 18 3 35 35 H 1.09006 * 109.46964 * 59.99670 * 19 18 3 36 36 H 1.09006 * 109.46662 * 299.99550 * 20 19 18 37 37 H 1.08999 * 109.47382 * 180.02562 * 20 19 18 38 38 H 1.09004 * 109.46780 * 180.02562 * 21 20 19 39 39 H 1.08996 * 109.47255 * 60.00272 * 21 20 19 40 40 H 1.08996 * 109.47693 * 300.00011 * 22 21 20 41 41 H 1.09002 * 109.46787 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.4767 2.1086 -1.2077 5 8 1.1249 3.2649 -1.1074 6 7 1.4037 1.4829 -2.3992 7 6 0.7983 2.1622 -3.5474 8 1 -0.0267 2.7874 -3.2061 9 6 1.8492 3.0354 -4.2356 10 6 0.2810 1.1361 -4.5225 11 1 0.3925 0.0834 -4.3085 12 6 -0.3346 1.5414 -5.6877 13 7 -0.4699 2.8233 -5.9485 14 14 -0.9764 0.2696 -6.8960 15 1 -1.9963 -0.5779 -6.2276 16 1 -1.5900 0.9581 -8.0600 17 1 0.1473 -0.5823 -7.3615 18 6 1.5416 2.0920 1.2711 19 6 2.0904 3.5201 1.2715 20 6 3.6192 3.4790 1.2267 21 6 4.0730 2.7585 -0.0444 22 6 3.5242 1.3303 -0.0446 23 1 -0.3634 0.5905 -0.8410 24 1 -0.3634 -1.0236 -0.0907 25 1 -0.3633 0.4332 0.9319 26 1 1.8306 -0.5261 -0.7813 27 1 1.7521 0.5828 -2.4965 28 1 2.2234 3.7776 -3.5303 29 1 1.3986 3.5412 -5.0896 30 1 2.6743 2.4102 -4.5769 31 1 -0.9033 3.1084 -6.7681 32 1 0.4524 2.1208 1.3032 33 1 1.9167 1.5587 2.1447 34 1 1.7667 4.0336 2.1768 35 1 1.7156 4.0536 0.3979 36 1 3.9939 2.9455 2.1003 37 1 4.0102 4.4964 1.2274 38 1 5.1622 2.7288 -0.0760 39 1 3.6982 3.2919 -0.9179 40 1 3.8990 0.7968 0.8288 41 1 3.8480 0.8169 -0.9500 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000309251716.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:46:57 Heat of formation + Delta-G solvation = -48.956023 kcal Electronic energy + Delta-G solvation = -20570.379698 eV Core-core repulsion = 17677.497929 eV Total energy + Delta-G solvation = -2892.881770 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 254.174 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.46707 -36.94743 -35.18683 -34.51324 -32.33627 -30.64851 -29.37981 -28.65874 -25.29548 -24.93078 -23.07960 -22.26362 -20.90546 -19.97130 -19.00017 -16.89938 -16.24688 -15.53237 -15.40674 -14.89509 -14.57463 -14.14485 -13.91084 -13.43473 -13.31098 -12.90685 -12.64465 -12.42524 -12.00174 -11.88516 -11.79466 -11.58893 -11.30540 -11.12418 -11.00091 -10.91723 -10.76351 -10.49606 -10.31158 -10.25192 -10.20137 -9.82434 -9.14127 -9.09933 -8.59792 -8.02307 -7.94295 -6.16015 -4.26092 3.22182 3.27810 3.28451 3.32896 3.94215 4.28485 4.40997 4.84410 4.93719 5.15994 5.20297 5.34485 5.43175 5.56170 5.59274 5.69527 5.74306 5.78288 5.84495 5.99019 6.05707 6.15526 6.21275 6.35151 6.41475 6.46580 6.49103 6.78199 6.81881 6.96593 7.04826 7.13045 7.38536 7.46302 7.53306 7.65131 7.87612 8.11818 8.61557 8.73978 9.09641 9.41943 10.89623 Molecular weight = 254.17amu Principal moments of inertia in cm(-1) A = 0.030409 B = 0.006332 C = 0.005814 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 920.573764 B = 4421.252624 C = 4814.814519 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 N -0.676 5.676 3 C 0.096 3.904 4 C 0.484 3.516 5 O -0.543 6.543 6 N -0.710 5.710 7 C 0.268 3.732 8 H 0.045 0.955 9 C -0.146 4.146 10 C -0.535 4.535 11 H 0.059 0.941 12 C 0.067 3.933 13 N -0.883 5.883 14 Si 0.901 3.099 15 H -0.276 1.276 16 H -0.285 1.285 17 H -0.276 1.276 18 C -0.083 4.083 19 C -0.147 4.147 20 C -0.112 4.112 21 C -0.122 4.122 22 C -0.100 4.100 23 H 0.039 0.961 24 H 0.067 0.933 25 H 0.065 0.935 26 H 0.340 0.660 27 H 0.383 0.617 28 H 0.015 0.985 29 H 0.089 0.911 30 H 0.025 0.975 31 H 0.265 0.735 32 H 0.061 0.939 33 H 0.065 0.935 34 H 0.051 0.949 35 H 0.114 0.886 36 H 0.053 0.947 37 H 0.057 0.943 38 H 0.061 0.939 39 H 0.068 0.932 40 H 0.076 0.924 41 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.391 -3.702 11.439 13.616 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 N -0.307 5.307 3 C 0.002 3.998 4 C 0.267 3.733 5 O -0.421 6.421 6 N -0.358 5.358 7 C 0.166 3.834 8 H 0.063 0.937 9 C -0.204 4.204 10 C -0.574 4.574 11 H 0.077 0.923 12 C -0.136 4.136 13 N -0.520 5.520 14 Si 0.729 3.271 15 H -0.202 1.202 16 H -0.211 1.211 17 H -0.201 1.201 18 C -0.121 4.121 19 C -0.184 4.184 20 C -0.150 4.150 21 C -0.160 4.160 22 C -0.138 4.138 23 H 0.058 0.942 24 H 0.086 0.914 25 H 0.084 0.916 26 H 0.159 0.841 27 H 0.215 0.785 28 H 0.034 0.966 29 H 0.107 0.893 30 H 0.044 0.956 31 H 0.075 0.925 32 H 0.080 0.920 33 H 0.084 0.916 34 H 0.070 0.930 35 H 0.132 0.868 36 H 0.072 0.928 37 H 0.075 0.925 38 H 0.080 0.920 39 H 0.087 0.913 40 H 0.095 0.905 41 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 6.061 -2.813 12.007 13.741 hybrid contribution -0.401 -0.941 -1.750 2.027 sum 5.660 -3.754 10.257 12.302 Atomic orbital electron populations 1.22330 0.87343 1.01958 1.01662 1.60650 1.08531 1.12165 1.49395 1.21366 0.95938 0.88172 0.94322 1.21335 0.78929 0.87789 0.85241 1.90457 1.49783 1.17109 1.84785 1.46623 1.59901 1.18432 1.10824 1.18695 0.91519 0.91898 0.81299 0.93688 1.22057 0.98385 0.98607 1.01395 1.21169 1.39263 0.92582 1.04377 0.92286 1.24882 0.95485 0.95487 0.97759 1.69893 1.42426 1.13938 1.25757 0.86516 0.79141 0.81154 0.80339 1.20181 1.21087 1.20145 1.21288 1.00484 0.95511 0.94839 1.22096 0.94952 0.97025 1.04372 1.21464 0.96662 0.99737 0.97117 1.21545 0.99783 0.95369 0.99275 1.21485 0.92088 0.97682 1.02592 0.94192 0.91396 0.91588 0.84148 0.78483 0.96587 0.89258 0.95605 0.92490 0.92037 0.91612 0.93031 0.86794 0.92805 0.92459 0.92032 0.91311 0.90511 0.91847 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.24 9.95 60.06 0.60 0.83 16 2 N -0.68 -9.25 6.34 -108.37 -0.69 -9.94 16 3 C 0.10 1.45 0.64 -132.75 -0.08 1.37 16 4 C 0.48 9.34 3.96 -10.99 -0.04 9.29 16 5 O -0.54 -12.31 12.61 5.56 0.07 -12.24 16 6 N -0.71 -14.42 4.45 -54.93 -0.24 -14.66 16 7 C 0.27 6.71 2.52 -69.08 -0.17 6.53 16 8 H 0.05 1.31 7.65 -51.93 -0.40 0.92 16 9 C -0.15 -3.62 9.26 37.15 0.34 -3.28 16 10 C -0.54 -14.01 8.73 -34.44 -0.30 -14.31 16 11 H 0.06 1.47 7.74 -52.48 -0.41 1.07 16 12 C 0.07 1.80 5.30 -17.82 -0.09 1.70 16 13 N -0.88 -24.76 11.32 55.43 0.63 -24.13 16 14 Si 0.90 20.50 29.54 -169.99 -5.02 15.48 16 15 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 16 H -0.29 -6.49 7.11 56.52 0.40 -6.08 16 17 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16 18 C -0.08 -1.22 4.36 -26.73 -0.12 -1.33 16 19 C -0.15 -2.18 5.63 -26.74 -0.15 -2.33 16 20 C -0.11 -1.46 5.92 -26.73 -0.16 -1.61 16 21 C -0.12 -1.67 5.70 -26.74 -0.15 -1.82 16 22 C -0.10 -1.33 4.96 -26.73 -0.13 -1.46 16 23 H 0.04 0.69 6.52 -51.93 -0.34 0.35 16 24 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 25 H 0.07 0.90 6.62 -51.93 -0.34 0.56 16 26 H 0.34 4.35 7.61 -39.29 -0.30 4.05 16 27 H 0.38 6.90 7.35 -40.82 -0.30 6.60 16 28 H 0.02 0.37 8.10 -51.93 -0.42 -0.05 16 29 H 0.09 2.42 6.07 -51.93 -0.32 2.10 16 30 H 0.02 0.60 8.14 -51.93 -0.42 0.17 16 31 H 0.27 7.08 8.31 -40.82 -0.34 6.74 16 32 H 0.06 0.96 6.55 -51.93 -0.34 0.62 16 33 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 34 H 0.05 0.69 8.14 -51.93 -0.42 0.26 16 35 H 0.11 2.09 4.94 -51.97 -0.26 1.83 16 36 H 0.05 0.62 8.14 -51.93 -0.42 0.19 16 37 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 38 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 39 H 0.07 1.15 7.03 -51.93 -0.36 0.78 16 40 H 0.08 0.91 8.14 -51.93 -0.42 0.49 16 41 H 0.06 0.82 8.14 -51.93 -0.42 0.39 16 LS Contribution 310.28 15.07 4.68 4.68 Total: -1.00 -28.62 310.28 -7.77 -36.38 By element: Atomic # 1 Polarization: 17.58 SS G_CDS: -6.72 Total: 10.85 kcal Atomic # 6 Polarization: -5.95 SS G_CDS: -0.47 Total: -6.42 kcal Atomic # 7 Polarization: -48.43 SS G_CDS: -0.30 Total: -48.73 kcal Atomic # 8 Polarization: -12.31 SS G_CDS: 0.07 Total: -12.24 kcal Atomic # 14 Polarization: 20.50 SS G_CDS: -5.02 Total: 15.48 kcal Total LS contribution 4.68 Total: 4.68 kcal Total: -28.62 -7.77 -36.38 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309251716.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.573 kcal (2) G-P(sol) polarization free energy of solvation -28.615 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.188 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.768 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.383 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.956 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds