Wall clock time and date at job start Mon Mar 30 2020 04:40:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09007 * 109.47190 * 2 1 4 4 C 1.50693 * 109.47058 * 120.00237 * 2 1 3 5 5 H 1.08002 * 120.00331 * 114.37005 * 4 2 1 6 6 C 1.37885 * 120.00119 * 294.35814 * 4 2 1 7 7 N 1.31516 * 120.00168 * 156.60535 * 6 4 2 8 8 Si 1.86799 * 119.99974 * 336.88923 * 6 4 2 9 9 H 1.48495 * 109.47179 * 179.71887 * 8 6 4 10 10 H 1.48504 * 109.47000 * 299.71811 * 8 6 4 11 11 H 1.48500 * 109.47297 * 59.71926 * 8 6 4 12 12 N 1.46897 * 109.47069 * 240.00066 * 2 1 3 13 13 C 1.46910 * 110.99968 * 84.99944 * 12 2 1 14 14 C 1.52995 * 109.47174 * 180.02562 * 13 12 2 15 15 C 1.52994 * 109.47214 * 180.02562 * 14 13 12 16 16 N 1.46501 * 109.47140 * 179.97438 * 15 14 13 17 17 C 1.45758 * 117.94697 * 269.73935 * 16 15 14 18 18 C 1.53101 * 110.38456 * 160.74475 * 17 16 15 19 19 C 1.53354 * 108.52929 * 51.11271 * 18 17 16 20 20 C 1.53065 * 108.42481 * 292.30955 * 19 18 17 21 21 C 1.33356 * 117.94781 * 89.99899 * 16 15 14 22 22 O 1.21284 * 118.24353 * 2.24572 * 21 16 15 23 23 H 1.09006 * 109.47378 * 53.10132 * 1 2 3 24 24 H 1.08996 * 109.47246 * 173.10534 * 1 2 3 25 25 H 1.09003 * 109.46967 * 293.10580 * 1 2 3 26 26 H 0.97002 * 119.99516 * 355.21605 * 7 6 4 27 27 H 1.00899 * 110.99860 * 321.05226 * 12 2 1 28 28 H 1.09000 * 109.46893 * 300.00418 * 13 12 2 29 29 H 1.08997 * 109.46937 * 60.00212 * 13 12 2 30 30 H 1.09007 * 109.47226 * 300.00268 * 14 13 12 31 31 H 1.09008 * 109.47308 * 59.99536 * 14 13 12 32 32 H 1.09001 * 109.47423 * 299.99856 * 15 14 13 33 33 H 1.08997 * 109.46936 * 60.00133 * 15 14 13 34 34 H 1.08996 * 109.29879 * 281.23595 * 17 16 15 35 35 H 1.08998 * 109.29818 * 40.61377 * 17 16 15 36 36 H 1.09000 * 109.80687 * 291.32746 * 18 17 16 37 37 H 1.09000 * 109.67960 * 170.82525 * 18 17 16 38 38 H 1.09003 * 109.66743 * 172.57314 * 19 18 17 39 39 H 1.09000 * 109.70111 * 52.06073 * 19 18 17 40 40 H 1.09005 * 109.40002 * 288.76635 * 20 19 18 41 41 H 1.08996 * 109.32818 * 168.99031 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7104 1.2304 5 1 2.5762 -1.6385 1.1339 6 6 1.7978 -0.1755 2.4794 7 7 1.8025 -0.9538 3.5396 8 14 1.4655 1.6533 2.6648 9 1 1.2395 1.9726 4.0973 10 1 2.6336 2.4219 2.1647 11 1 0.2592 2.0194 1.8799 12 7 2.0196 -0.6925 -1.1994 13 6 2.0824 0.2227 -2.3469 14 6 2.5949 -0.5330 -3.5745 15 6 2.6609 0.4202 -4.7694 16 7 3.1523 -0.3033 -5.9447 17 6 4.5903 -0.3253 -6.1815 18 6 4.9582 -1.4748 -7.1234 19 6 4.0600 -1.3949 -8.3638 20 6 2.6228 -1.7095 -7.9415 21 6 2.2554 -0.8961 -6.7338 22 8 1.0801 -0.7711 -6.4618 23 1 -0.3634 0.6170 -0.8219 24 1 -0.3633 -1.0202 -0.1234 25 1 -0.3633 0.4033 0.9453 26 1 1.9017 -1.9132 3.4364 27 1 1.4495 -1.4978 -1.4101 28 1 1.0870 0.6164 -2.5525 29 1 2.7588 1.0462 -2.1183 30 1 3.5903 -0.9272 -3.3692 31 1 1.9182 -1.3565 -3.8030 32 1 1.6658 0.8147 -4.9750 33 1 3.3379 1.2432 -4.5406 34 1 4.8968 0.6216 -6.6259 35 1 5.1096 -0.4591 -5.2325 36 1 4.8025 -2.4290 -6.6201 37 1 6.0027 -1.3848 -7.4219 38 1 4.3924 -2.1219 -9.1049 39 1 4.1068 -0.3916 -8.7873 40 1 2.5395 -2.7699 -7.7029 41 1 1.9452 -1.4684 -8.7604 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000309371340.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:40:33 Heat of formation + Delta-G solvation = -75.496642 kcal Electronic energy + Delta-G solvation = -18945.372134 eV Core-core repulsion = 16051.339477 eV Total energy + Delta-G solvation = -2894.032657 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 254.174 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.51180 -38.33156 -37.50211 -35.97083 -34.60701 -32.75364 -30.61078 -29.81146 -26.88407 -26.10947 -24.99927 -23.23828 -22.29023 -21.78566 -19.61107 -19.49511 -17.69856 -17.54445 -16.69320 -16.38877 -16.15916 -15.78287 -15.34854 -15.13643 -14.97653 -14.52746 -14.30924 -14.24373 -13.94050 -13.72634 -13.35960 -13.01055 -12.85292 -12.65481 -12.42010 -12.29502 -12.19067 -11.90967 -11.88437 -11.76686 -11.69806 -11.60707 -11.16112 -10.67116 -10.37551 -9.73830 -9.15111 -8.69232 -6.29431 1.46383 1.52997 1.59983 1.72774 2.02569 2.50983 3.02286 3.46029 3.60027 3.84478 3.90444 3.94355 4.00417 4.18971 4.29340 4.41036 4.44351 4.51881 4.56025 4.63531 4.65364 4.70919 4.73038 4.79661 4.89220 4.92611 5.01335 5.06258 5.09405 5.15700 5.22280 5.36156 5.39779 5.48344 5.86599 6.09142 6.40779 6.48836 6.65924 6.75362 7.14845 7.45112 8.63228 Molecular weight = 254.17amu Principal moments of inertia in cm(-1) A = 0.041665 B = 0.003684 C = 0.003618 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 671.860715 B = 7598.631779 C = 7737.833062 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.191 3.809 3 H 0.031 0.969 4 C -0.596 4.596 5 H 0.019 0.981 6 C -0.017 4.017 7 N -0.934 5.934 8 Si 1.080 2.920 9 H -0.287 1.287 10 H -0.264 1.264 11 H -0.250 1.250 12 N -0.688 5.688 13 C 0.063 3.937 14 C -0.111 4.111 15 C 0.111 3.889 16 N -0.599 5.599 17 C 0.102 3.898 18 C -0.134 4.134 19 C -0.116 4.116 20 C -0.131 4.131 21 C 0.502 3.498 22 O -0.609 6.609 23 H 0.049 0.951 24 H 0.039 0.961 25 H 0.046 0.954 26 H 0.253 0.747 27 H 0.328 0.672 28 H 0.022 0.978 29 H 0.073 0.927 30 H 0.070 0.930 31 H 0.040 0.960 32 H 0.066 0.934 33 H 0.102 0.898 34 H 0.085 0.915 35 H 0.081 0.919 36 H 0.066 0.934 37 H 0.110 0.890 38 H 0.098 0.902 39 H 0.075 0.925 40 H 0.104 0.896 41 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.234 3.086 -26.516 27.658 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.081 3.919 3 H 0.049 0.951 4 C -0.634 4.634 5 H 0.037 0.963 6 C -0.216 4.216 7 N -0.570 5.570 8 Si 0.901 3.099 9 H -0.213 1.213 10 H -0.189 1.189 11 H -0.175 1.175 12 N -0.317 5.317 13 C -0.067 4.067 14 C -0.150 4.150 15 C -0.012 4.012 16 N -0.330 5.330 17 C -0.019 4.019 18 C -0.172 4.172 19 C -0.154 4.154 20 C -0.171 4.171 21 C 0.292 3.708 22 O -0.492 6.492 23 H 0.068 0.932 24 H 0.058 0.942 25 H 0.065 0.935 26 H 0.062 0.938 27 H 0.145 0.855 28 H 0.040 0.960 29 H 0.092 0.908 30 H 0.089 0.911 31 H 0.059 0.941 32 H 0.085 0.915 33 H 0.120 0.880 34 H 0.103 0.897 35 H 0.100 0.900 36 H 0.084 0.916 37 H 0.128 0.872 38 H 0.117 0.883 39 H 0.094 0.906 40 H 0.123 0.877 41 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 7.093 4.402 -25.133 26.483 hybrid contribution -0.849 -1.770 -0.649 2.067 sum 6.244 2.632 -25.782 26.657 Atomic orbital electron populations 1.22682 0.99693 1.00141 1.00420 1.19320 0.89959 0.94076 0.88525 0.95115 1.22121 1.39004 1.09571 0.92739 0.96255 1.27125 0.93058 1.09564 0.91849 1.70975 1.47426 1.05577 1.32984 0.83607 0.78819 0.71065 0.76430 1.21318 1.18916 1.17496 1.60603 1.57871 1.09604 1.03670 1.21910 0.98973 0.95767 0.90086 1.21676 1.01497 0.98301 0.93511 1.21424 1.01231 0.94599 0.83994 1.47497 1.08309 1.52073 1.25124 1.21775 0.77981 1.00800 1.01353 1.21950 1.01961 0.97749 0.95511 1.21666 0.91692 1.03767 0.98250 1.21700 1.00392 1.00476 0.94493 1.20989 0.84964 0.79519 0.85343 1.90702 1.20472 1.63334 1.74666 0.93247 0.94212 0.93504 0.93849 0.85541 0.95969 0.90835 0.91088 0.94128 0.91510 0.87975 0.89733 0.90014 0.91555 0.87155 0.88348 0.90589 0.87747 0.87944 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -7.53 8.90 71.98 0.64 -6.89 16 2 C 0.19 9.22 2.17 44.17 0.10 9.32 16 3 H 0.03 1.47 6.37 -2.38 -0.02 1.45 16 4 C -0.60 -35.11 9.05 25.60 0.23 -34.88 16 5 H 0.02 1.26 8.06 -2.91 -0.02 1.24 16 6 C -0.02 -1.02 5.19 84.66 0.44 -0.58 16 7 N -0.93 -59.65 13.70 21.45 0.29 -59.36 16 8 Si 1.08 50.48 26.44 68.60 1.81 52.29 16 9 H -0.29 -13.48 7.11 99.48 0.71 -12.77 16 10 H -0.26 -11.45 7.11 99.48 0.71 -10.74 16 11 H -0.25 -10.50 6.15 99.48 0.61 -9.89 16 12 N -0.69 -29.39 6.23 -495.45 -3.09 -32.48 16 13 C 0.06 2.11 5.48 86.30 0.47 2.58 16 14 C -0.11 -3.18 5.79 30.59 0.18 -3.01 16 15 C 0.11 2.65 5.22 86.38 0.45 3.10 16 16 N -0.60 -12.45 2.81 -826.30 -2.32 -14.78 16 17 C 0.10 1.28 6.32 86.55 0.55 1.83 16 18 C -0.13 -1.14 6.03 30.75 0.19 -0.96 16 19 C -0.12 -0.96 6.03 30.73 0.19 -0.77 16 20 C -0.13 -1.96 6.03 29.70 0.18 -1.78 16 21 C 0.50 12.27 7.46 87.71 0.65 12.92 16 22 O -0.61 -21.12 16.18 -3.04 -0.05 -21.17 16 23 H 0.05 1.88 7.64 -2.38 -0.02 1.86 16 24 H 0.04 1.75 8.00 -2.39 -0.02 1.73 16 25 H 0.05 2.14 5.48 -2.39 -0.01 2.13 16 26 H 0.25 16.41 8.73 -92.71 -0.81 15.60 16 27 H 0.33 13.88 8.38 -89.69 -0.75 13.13 16 28 H 0.02 0.75 7.58 -2.39 -0.02 0.73 16 29 H 0.07 2.37 8.05 -2.39 -0.02 2.35 16 30 H 0.07 2.00 8.14 -2.38 -0.02 1.98 16 31 H 0.04 1.33 8.14 -2.38 -0.02 1.31 16 32 H 0.07 1.88 7.13 -2.39 -0.02 1.86 16 33 H 0.10 1.91 8.01 -2.39 -0.02 1.89 16 34 H 0.08 0.78 8.14 -2.39 -0.02 0.76 16 35 H 0.08 1.02 8.10 -2.39 -0.02 1.00 16 36 H 0.07 0.70 8.12 -2.39 -0.02 0.68 16 37 H 0.11 0.43 8.14 -2.39 -0.02 0.41 16 38 H 0.10 0.44 8.14 -2.39 -0.02 0.42 16 39 H 0.08 0.58 8.13 -2.39 -0.02 0.56 16 40 H 0.10 1.44 8.14 -2.38 -0.02 1.42 16 41 H 0.10 1.44 8.14 -2.39 -0.02 1.42 16 Total: -1.00 -75.11 324.18 1.02 -74.09 By element: Atomic # 1 Polarization: 20.41 SS G_CDS: 0.11 Total: 20.52 kcal Atomic # 6 Polarization: -23.38 SS G_CDS: 4.26 Total: -19.12 kcal Atomic # 7 Polarization: -101.50 SS G_CDS: -5.12 Total: -106.61 kcal Atomic # 8 Polarization: -21.12 SS G_CDS: -0.05 Total: -21.17 kcal Atomic # 14 Polarization: 50.48 SS G_CDS: 1.81 Total: 52.29 kcal Total: -75.11 1.02 -74.09 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309371340.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.406 kcal (2) G-P(sol) polarization free energy of solvation -75.107 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.513 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.016 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.091 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.497 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds