Wall clock time and date at job start Mon Mar 30 2020 04:46:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09001 * 109.46870 * 2 1 4 4 C 1.50701 * 109.47502 * 240.00577 * 2 1 3 5 5 H 1.07992 * 120.00023 * 240.00536 * 4 2 1 6 6 C 1.37882 * 120.00108 * 59.99168 * 4 2 1 7 7 N 1.31516 * 119.99678 * 0.02562 * 6 4 2 8 8 Si 1.86793 * 120.00170 * 180.02562 * 6 4 2 9 9 H 1.48497 * 109.47154 * 90.00280 * 8 6 4 10 10 H 1.48503 * 109.47363 * 210.00577 * 8 6 4 11 11 H 1.48507 * 109.47247 * 330.00398 * 8 6 4 12 12 N 1.46898 * 109.47148 * 120.00094 * 2 1 3 13 13 C 1.46899 * 111.00031 * 274.19609 * 12 2 1 14 14 H 1.08997 * 108.77008 * 32.46648 * 13 12 2 15 15 C 1.50231 * 108.75698 * 150.89406 * 13 12 2 16 16 C 1.54242 * 108.50256 * 214.94907 * 15 13 12 17 17 C 1.45545 * 112.40420 * 280.05308 * 16 15 13 18 18 C 1.54237 * 112.40905 * 61.93947 * 17 16 15 19 19 C 1.50481 * 108.51490 * 280.01158 * 18 17 16 20 20 C 1.54061 * 112.49482 * 94.15267 * 19 18 17 21 21 H 1.08998 * 108.81712 * 79.03364 * 20 19 18 22 22 C 1.50704 * 108.81007 * 197.41812 * 20 19 18 23 23 N 1.34775 * 119.99904 * 263.16946 * 22 20 19 24 24 O 1.21276 * 120.00001 * 83.17241 * 22 20 19 25 25 H 1.08999 * 109.47178 * 295.07359 * 1 2 3 26 26 H 1.09001 * 109.47119 * 55.07727 * 1 2 3 27 27 H 1.09004 * 109.47081 * 175.07070 * 1 2 3 28 28 H 0.96999 * 119.99776 * 180.02562 * 7 6 4 29 29 H 1.00895 * 110.99872 * 38.15099 * 12 2 1 30 30 H 1.09001 * 109.59952 * 95.26420 * 15 13 12 31 31 H 1.09000 * 109.82996 * 334.76476 * 15 13 12 32 32 H 1.08999 * 108.89435 * 159.30774 * 16 15 13 33 33 H 1.08993 * 108.82159 * 40.75515 * 16 15 13 34 34 H 1.09007 * 108.89903 * 301.18164 * 17 16 15 35 35 H 1.09007 * 108.89522 * 182.69352 * 17 16 15 36 36 H 1.09003 * 109.63340 * 160.30522 * 18 17 16 37 37 H 1.09003 * 109.79313 * 39.81416 * 18 17 16 38 38 H 1.08997 * 108.87538 * 333.37347 * 19 18 17 39 39 H 1.09004 * 108.87503 * 214.92271 * 19 18 17 40 40 H 0.97002 * 119.99911 * 179.97438 * 23 22 20 41 41 H 0.96997 * 120.00008 * 359.72313 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7103 -1.2305 5 1 2.6533 -1.5883 -1.1315 6 6 1.6993 -0.2392 -2.4828 7 7 0.9434 0.8303 -2.6034 8 14 2.3214 -1.1200 -4.0080 9 1 1.3429 -2.1614 -4.4120 10 1 2.4867 -0.1409 -5.1123 11 1 3.6295 -1.7579 -3.7123 12 7 2.0197 -0.6925 1.1994 13 6 2.1006 0.2271 2.3421 14 1 1.3065 0.9683 2.2526 15 6 1.8940 -0.5557 3.6076 16 6 1.1271 0.3297 4.6112 17 6 1.9955 1.2825 5.2867 18 6 2.6550 2.2744 4.3069 19 6 3.8288 1.5941 3.6560 20 6 3.4617 0.9480 2.3064 21 1 3.4281 1.7247 1.5424 22 6 4.5302 -0.0489 1.9383 23 7 5.5236 0.3068 1.0998 24 8 4.4962 -1.1712 2.3966 25 1 -0.3633 0.4355 0.9308 26 1 -0.3633 0.5883 -0.8426 27 1 -0.3633 -1.0239 -0.0883 28 1 0.7087 1.1615 -3.4843 29 1 1.4418 -1.4903 1.4175 30 1 2.8608 -0.8328 4.0281 31 1 1.3154 -1.4548 3.3960 32 1 0.6563 -0.3096 5.3579 33 1 0.3514 0.8771 4.0759 34 1 2.7769 0.7356 5.8145 35 1 1.4071 1.8428 6.0135 36 1 2.9976 3.1543 4.8516 37 1 1.9358 2.5731 3.5442 38 1 4.2046 0.8212 4.3264 39 1 4.6163 2.3297 3.4921 40 1 6.2115 -0.3348 0.8631 41 1 5.5485 1.2032 0.7300 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000309376661.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:46:05 Heat of formation + Delta-G solvation = -56.818064 kcal Electronic energy + Delta-G solvation = -20502.766176 eV Core-core repulsion = 17609.543482 eV Total energy + Delta-G solvation = -2893.222693 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 254.174 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -39.87694 -37.46586 -35.52333 -33.08197 -32.71439 -31.96014 -30.39394 -27.11023 -25.36698 -25.02045 -23.22016 -21.03286 -20.48960 -19.91053 -18.53400 -16.60088 -16.17149 -16.15555 -15.48382 -15.12876 -14.63908 -13.79481 -13.60666 -13.55615 -13.32687 -13.03593 -12.82722 -12.38457 -11.98062 -11.73249 -11.62711 -11.37131 -10.99051 -10.84063 -10.73849 -10.50342 -10.38612 -10.32595 -10.16788 -10.14323 -10.01295 -9.59251 -8.98572 -8.94906 -8.90333 -8.33939 -7.08647 -5.95801 -3.97511 3.33192 3.39575 3.44790 3.47683 4.18880 4.46318 4.79359 4.85846 5.05413 5.25180 5.34642 5.36931 5.45471 5.55515 5.63322 5.65359 5.82641 5.92811 6.12657 6.15933 6.23604 6.28898 6.29753 6.34027 6.41596 6.53872 6.67172 6.73860 6.85849 6.88237 7.16086 7.41181 7.44610 7.77737 7.95151 8.00958 8.33528 8.63718 8.71075 9.04232 9.11299 9.67755 11.11404 Molecular weight = 254.17amu Principal moments of inertia in cm(-1) A = 0.025168 B = 0.006996 C = 0.006185 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1112.276708 B = 4001.108111 C = 4525.713125 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.211 3.789 3 H 0.029 0.971 4 C -0.489 4.489 5 H 0.060 0.940 6 C 0.055 3.945 7 N -0.899 5.899 8 Si 0.894 3.106 9 H -0.283 1.283 10 H -0.289 1.289 11 H -0.275 1.275 12 N -0.678 5.678 13 C 0.111 3.889 14 H 0.040 0.960 15 C -0.116 4.116 16 C -0.121 4.121 17 C -0.114 4.114 18 C -0.117 4.117 19 C -0.105 4.105 20 C -0.093 4.093 21 H 0.079 0.921 22 C 0.552 3.448 23 N -0.861 5.861 24 O -0.538 6.538 25 H 0.004 0.996 26 H 0.084 0.916 27 H 0.029 0.971 28 H 0.258 0.742 29 H 0.330 0.670 30 H 0.079 0.921 31 H 0.062 0.938 32 H 0.054 0.946 33 H 0.057 0.943 34 H 0.058 0.942 35 H 0.053 0.947 36 H 0.061 0.939 37 H 0.069 0.931 38 H 0.066 0.934 39 H 0.059 0.941 40 H 0.392 0.608 41 H 0.395 0.605 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.139 4.211 12.320 13.662 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.104 3.896 3 H 0.047 0.953 4 C -0.528 4.528 5 H 0.079 0.921 6 C -0.145 4.145 7 N -0.539 5.539 8 Si 0.722 3.278 9 H -0.209 1.209 10 H -0.215 1.215 11 H -0.200 1.200 12 N -0.309 5.309 13 C 0.000 4.000 14 H 0.058 0.942 15 C -0.154 4.154 16 C -0.159 4.159 17 C -0.151 4.151 18 C -0.154 4.154 19 C -0.143 4.143 20 C -0.115 4.115 21 H 0.097 0.903 22 C 0.338 3.662 23 N -0.423 5.423 24 O -0.414 6.414 25 H 0.023 0.977 26 H 0.103 0.897 27 H 0.048 0.952 28 H 0.068 0.932 29 H 0.148 0.852 30 H 0.098 0.902 31 H 0.081 0.919 32 H 0.073 0.927 33 H 0.076 0.924 34 H 0.077 0.923 35 H 0.072 0.928 36 H 0.080 0.920 37 H 0.088 0.912 38 H 0.085 0.915 39 H 0.077 0.923 40 H 0.222 0.778 41 H 0.222 0.778 Dipole moment (debyes) X Y Z Total from point charges 4.531 3.706 12.400 13.712 hybrid contribution -0.457 -0.051 -1.279 1.359 sum 4.074 3.655 11.120 12.394 Atomic orbital electron populations 1.22419 1.00880 0.99970 0.99314 1.19206 0.89427 0.94046 0.86964 0.95279 1.21173 1.29811 1.12184 0.89603 0.92132 1.24935 0.95468 0.95216 0.98911 1.69898 1.37607 1.23273 1.23146 0.86562 0.79263 0.79282 0.82648 1.20905 1.21481 1.20001 1.60753 1.57921 1.08907 1.03317 1.20897 0.93063 0.94434 0.91579 0.94191 1.21571 1.01271 0.97443 0.95090 1.20528 0.98646 0.97899 0.98806 1.20474 0.99397 0.97287 0.97970 1.21329 0.97827 0.97603 0.98666 1.21263 0.98124 0.99403 0.95556 1.21756 0.95133 0.97048 0.97581 0.90272 1.20100 0.80664 0.88327 0.77142 1.43883 1.29826 1.17634 1.50997 1.90607 1.75030 1.21259 1.54462 0.97730 0.89735 0.95230 0.93234 0.85189 0.90201 0.91920 0.92683 0.92397 0.92297 0.92793 0.92018 0.91242 0.91530 0.92251 0.77810 0.77799 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.01 8.86 37.16 0.33 -3.69 16 2 C 0.21 5.24 2.35 -68.86 -0.16 5.08 16 3 H 0.03 0.78 7.37 -51.93 -0.38 0.40 16 4 C -0.49 -13.56 8.84 -34.44 -0.30 -13.86 16 5 H 0.06 1.75 7.81 -52.49 -0.41 1.34 16 6 C 0.05 1.52 5.30 -17.82 -0.09 1.42 16 7 N -0.90 -25.56 11.37 55.43 0.63 -24.93 16 8 Si 0.89 21.70 29.54 -169.99 -5.02 16.68 16 9 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 10 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 11 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 12 N -0.68 -14.66 4.66 -101.82 -0.47 -15.14 16 13 C 0.11 1.99 1.37 -68.53 -0.09 1.90 16 14 H 0.04 0.75 5.58 -51.93 -0.29 0.46 16 15 C -0.12 -1.84 4.89 -27.46 -0.13 -1.97 16 16 C -0.12 -1.56 5.27 -29.60 -0.16 -1.72 16 17 C -0.11 -1.30 5.26 -29.60 -0.16 -1.45 16 18 C -0.12 -1.35 5.60 -27.34 -0.15 -1.51 16 19 C -0.11 -1.35 4.67 -27.44 -0.13 -1.48 16 20 C -0.09 -1.51 2.27 -90.66 -0.21 -1.72 16 21 H 0.08 1.32 7.67 -51.93 -0.40 0.92 16 22 C 0.55 9.98 6.09 -10.98 -0.07 9.91 16 23 N -0.86 -12.89 8.87 31.22 0.28 -12.61 16 24 O -0.54 -11.45 15.48 5.56 0.09 -11.36 16 25 H 0.00 0.08 7.45 -51.93 -0.39 -0.31 16 26 H 0.08 2.25 6.22 -51.93 -0.32 1.92 16 27 H 0.03 0.70 8.14 -51.93 -0.42 0.28 16 28 H 0.26 7.04 8.31 -40.82 -0.34 6.70 16 29 H 0.33 7.13 7.47 -39.29 -0.29 6.84 16 30 H 0.08 1.35 5.75 -51.93 -0.30 1.05 16 31 H 0.06 1.02 7.24 -51.93 -0.38 0.65 16 32 H 0.05 0.65 8.14 -51.93 -0.42 0.22 16 33 H 0.06 0.78 7.46 -51.93 -0.39 0.39 16 34 H 0.06 0.66 7.47 -51.93 -0.39 0.28 16 35 H 0.05 0.54 8.14 -51.93 -0.42 0.11 16 36 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 37 H 0.07 0.88 6.99 -51.93 -0.36 0.51 16 38 H 0.07 0.90 6.46 -51.93 -0.34 0.57 16 39 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 40 H 0.39 5.46 8.93 -40.82 -0.36 5.09 16 41 H 0.39 4.96 8.75 -40.82 -0.36 4.60 16 LS Contribution 309.69 15.07 4.67 4.67 Total: -1.00 -30.81 309.69 -7.76 -38.58 By element: Atomic # 1 Polarization: 19.80 SS G_CDS: -6.60 Total: 13.20 kcal Atomic # 6 Polarization: -7.76 SS G_CDS: -1.33 Total: -9.09 kcal Atomic # 7 Polarization: -53.11 SS G_CDS: 0.43 Total: -52.68 kcal Atomic # 8 Polarization: -11.45 SS G_CDS: 0.09 Total: -11.36 kcal Atomic # 14 Polarization: 21.70 SS G_CDS: -5.02 Total: 16.68 kcal Total LS contribution 4.67 Total: 4.67 kcal Total: -30.81 -7.76 -38.58 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309376661.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.239 kcal (2) G-P(sol) polarization free energy of solvation -30.814 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.054 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.764 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.579 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.818 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds