Wall clock time and date at job start Mon Mar 30 2020 04:47:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09002 * 109.47248 * 2 1 4 4 C 1.50704 * 109.46879 * 239.99842 * 2 1 3 5 5 H 1.07999 * 120.00342 * 239.99879 * 4 2 1 6 6 C 1.37877 * 119.99598 * 60.00350 * 4 2 1 7 7 N 1.31517 * 120.00411 * 359.97438 * 6 4 2 8 8 Si 1.86801 * 119.99895 * 180.02562 * 6 4 2 9 9 H 1.48499 * 109.47325 * 89.99827 * 8 6 4 10 10 H 1.48498 * 109.46869 * 209.99691 * 8 6 4 11 11 H 1.48499 * 109.47179 * 329.99553 * 8 6 4 12 12 N 1.46503 * 109.47225 * 120.00582 * 2 1 3 13 13 C 1.34777 * 119.99569 * 274.99457 * 12 2 1 14 14 O 1.21283 * 120.00152 * 0.02562 * 13 12 2 15 15 C 1.50704 * 120.00119 * 179.97438 * 13 12 2 16 16 C 1.52996 * 109.47270 * 179.97438 * 15 13 12 17 17 H 1.09001 * 109.47372 * 305.00448 * 16 15 13 18 18 C 1.53002 * 109.46891 * 65.00484 * 16 15 13 19 19 C 1.52996 * 109.46891 * 179.97438 * 18 16 15 20 20 C 1.53000 * 109.47328 * 299.99597 * 19 18 16 21 21 C 1.52997 * 109.47060 * 60.00126 * 20 19 18 22 22 C 1.52997 * 109.46975 * 185.00076 * 16 15 13 23 23 H 1.09000 * 109.47140 * 60.00388 * 22 16 15 24 24 N 1.46902 * 109.47489 * 299.99979 * 22 16 15 25 25 H 1.09008 * 109.46653 * 299.99537 * 1 2 3 26 26 H 1.08993 * 109.47144 * 59.99968 * 1 2 3 27 27 H 1.09002 * 109.47248 * 179.97438 * 1 2 3 28 28 H 0.96994 * 120.00097 * 179.97438 * 7 6 4 29 29 H 0.96995 * 120.00705 * 95.00092 * 12 2 1 30 30 H 1.08998 * 109.46686 * 60.00138 * 15 13 12 31 31 H 1.09000 * 109.47163 * 300.00936 * 15 13 12 32 32 H 1.08992 * 109.47056 * 59.99654 * 18 16 15 33 33 H 1.09004 * 109.47006 * 299.99770 * 18 16 15 34 34 H 1.09004 * 109.47368 * 179.97438 * 19 18 16 35 35 H 1.09001 * 109.47372 * 59.99964 * 19 18 16 36 36 H 1.09002 * 109.47398 * 180.02562 * 20 19 18 37 37 H 1.09001 * 109.47194 * 300.00476 * 20 19 18 38 38 H 1.08998 * 109.47533 * 59.99948 * 21 20 19 39 39 H 1.08996 * 109.47853 * 180.02562 * 21 20 19 40 40 H 1.00896 * 111.00210 * 180.02562 * 24 22 16 41 41 H 1.00901 * 111.00140 * 303.95888 * 24 22 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7105 -1.2305 5 1 2.6532 -1.5886 -1.1315 6 6 1.6992 -0.2393 -2.4827 7 7 0.9427 0.8297 -2.6034 8 14 2.3211 -1.1203 -4.0080 9 1 1.3425 -2.1616 -4.4119 10 1 2.4863 -0.1413 -5.1123 11 1 3.6291 -1.7584 -3.7124 12 7 2.0184 -0.6907 1.1961 13 6 2.1472 -0.0184 2.3571 14 8 1.8583 1.1583 2.4117 15 6 2.6490 -0.7290 3.5877 16 6 2.7013 0.2543 4.7587 17 1 3.3034 1.1192 4.4803 18 6 1.2826 0.7107 5.1051 19 6 1.3348 1.6934 6.2765 20 6 1.9603 1.0058 7.4918 21 6 3.3789 0.5494 7.1454 22 6 3.3270 -0.4329 5.9741 23 1 4.3377 -0.7580 5.7273 24 7 2.5155 -1.5985 6.3493 25 1 -0.3633 0.5138 0.8901 26 1 -0.3633 0.5138 -0.8899 27 1 -0.3634 -1.0277 -0.0005 28 1 0.7087 1.1613 -3.4843 29 1 2.2491 -1.6318 1.1526 30 1 3.6481 -1.1215 3.3985 31 1 1.9761 -1.5508 3.8325 32 1 0.6805 -0.1542 5.3835 33 1 0.8368 1.2002 4.2392 34 1 0.3242 2.0190 6.5231 35 1 1.9370 2.5584 5.9986 36 1 1.9971 1.7058 8.3265 37 1 1.3581 0.1408 7.7697 38 1 3.9812 1.4142 6.8674 39 1 3.8245 0.0590 8.0109 40 1 2.9081 -2.0696 7.1505 41 1 1.5574 -1.3322 6.5204 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000381245389.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:47:58 Heat of formation + Delta-G solvation = -69.688808 kcal Electronic energy + Delta-G solvation = -19544.412956 eV Core-core repulsion = 16650.632145 eV Total energy + Delta-G solvation = -2893.780811 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 254.174 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -39.80078 -38.21125 -34.74481 -32.91218 -32.32545 -32.17044 -29.29601 -28.61099 -26.21904 -25.19207 -22.52787 -22.01575 -20.59223 -19.21290 -18.86814 -16.96946 -16.48655 -15.44916 -15.30178 -15.04262 -14.68038 -14.31215 -14.16049 -14.01686 -13.44533 -12.88666 -12.53680 -12.32492 -12.16529 -11.89604 -11.75074 -11.66429 -11.37894 -11.04728 -10.91612 -10.80927 -10.61890 -10.37991 -10.28539 -10.24612 -10.18904 -9.93002 -8.98695 -8.79188 -8.66964 -8.48230 -7.78581 -6.08029 -4.16937 3.26900 3.33574 3.36071 3.57514 4.19577 4.42179 4.52729 4.72616 4.76817 4.81036 5.18787 5.23383 5.24823 5.37154 5.44374 5.53731 5.57393 5.68105 5.82381 5.87219 5.97322 5.98565 6.00921 6.25399 6.26079 6.34863 6.61556 6.71425 6.89006 7.03524 7.11559 7.22060 7.38755 7.56107 7.65046 7.76320 7.98519 8.21125 8.78384 8.85682 9.27192 9.51493 10.97919 Molecular weight = 254.17amu Principal moments of inertia in cm(-1) A = 0.045956 B = 0.004263 C = 0.004073 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 609.128793 B = 6566.046319 C = 6872.487618 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.263 3.737 3 H 0.047 0.953 4 C -0.532 4.532 5 H 0.060 0.940 6 C 0.065 3.935 7 N -0.884 5.884 8 Si 0.901 3.099 9 H -0.280 1.280 10 H -0.285 1.285 11 H -0.274 1.274 12 N -0.712 5.712 13 C 0.498 3.502 14 O -0.558 6.558 15 C -0.128 4.128 16 C -0.059 4.059 17 H 0.078 0.922 18 C -0.122 4.122 19 C -0.119 4.119 20 C -0.120 4.120 21 C -0.153 4.153 22 C 0.094 3.906 23 H 0.078 0.922 24 N -0.841 5.841 25 H 0.014 0.986 26 H 0.088 0.912 27 H 0.025 0.975 28 H 0.263 0.737 29 H 0.388 0.612 30 H 0.082 0.918 31 H 0.094 0.906 32 H 0.055 0.945 33 H 0.090 0.910 34 H 0.058 0.942 35 H 0.062 0.938 36 H 0.057 0.943 37 H 0.056 0.944 38 H 0.067 0.933 39 H 0.057 0.943 40 H 0.335 0.665 41 H 0.340 0.660 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.865 -3.326 18.071 18.597 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.162 3.838 3 H 0.065 0.935 4 C -0.571 4.571 5 H 0.079 0.921 6 C -0.138 4.138 7 N -0.522 5.522 8 Si 0.728 3.272 9 H -0.206 1.206 10 H -0.211 1.211 11 H -0.199 1.199 12 N -0.360 5.360 13 C 0.283 3.717 14 O -0.438 6.438 15 C -0.169 4.169 16 C -0.078 4.078 17 H 0.096 0.904 18 C -0.160 4.160 19 C -0.157 4.157 20 C -0.158 4.158 21 C -0.193 4.193 22 C -0.018 4.018 23 H 0.096 0.904 24 N -0.372 5.372 25 H 0.033 0.967 26 H 0.107 0.893 27 H 0.044 0.956 28 H 0.073 0.927 29 H 0.220 0.780 30 H 0.100 0.900 31 H 0.112 0.888 32 H 0.073 0.927 33 H 0.108 0.892 34 H 0.077 0.923 35 H 0.081 0.919 36 H 0.076 0.924 37 H 0.074 0.926 38 H 0.086 0.914 39 H 0.075 0.925 40 H 0.147 0.853 41 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges 2.744 -2.643 17.192 17.609 hybrid contribution 0.291 -0.433 0.029 0.522 sum 3.035 -3.075 17.221 17.754 Atomic orbital electron populations 1.22062 0.98624 0.98983 1.00747 1.18697 0.90925 0.93943 0.80281 0.93526 1.21252 1.32263 1.13113 0.90441 0.92138 1.24892 0.94872 0.94954 0.99038 1.69907 1.36025 1.22506 1.23772 0.86461 0.79169 0.79273 0.82269 1.20575 1.21106 1.19868 1.46544 1.65202 1.13507 1.10722 1.20652 0.78460 0.87588 0.84979 1.90594 1.51704 1.16334 1.85173 1.21614 1.02775 0.99463 0.93012 1.20851 0.97305 0.97242 0.92399 0.90384 1.21722 0.96593 0.98580 0.99073 1.21537 1.00373 0.98836 0.94910 1.21545 0.96097 0.99999 0.98144 1.22319 0.97369 1.00660 0.98925 1.21484 0.97249 0.89132 0.93924 0.90362 1.58987 1.06525 1.27574 1.44098 0.96725 0.89313 0.95590 0.92654 0.78023 0.89990 0.88759 0.92680 0.89187 0.92325 0.91906 0.92390 0.92561 0.91442 0.92457 0.85346 0.84446 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.70 9.26 37.16 0.34 -3.36 16 2 C 0.26 6.85 2.56 -69.08 -0.18 6.68 16 3 H 0.05 1.40 7.58 -51.93 -0.39 1.01 16 4 C -0.53 -14.39 8.73 -34.44 -0.30 -14.69 16 5 H 0.06 1.57 7.74 -52.49 -0.41 1.16 16 6 C 0.07 1.79 5.30 -17.82 -0.09 1.69 16 7 N -0.88 -25.30 11.32 55.43 0.63 -24.68 16 8 Si 0.90 20.92 29.54 -169.99 -5.02 15.89 16 9 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 10 H -0.29 -6.62 7.11 56.52 0.40 -6.22 16 11 H -0.27 -6.25 7.11 56.52 0.40 -5.85 16 12 N -0.71 -15.18 5.07 -54.93 -0.28 -15.46 16 13 C 0.50 9.94 7.51 -10.98 -0.08 9.85 16 14 O -0.56 -13.08 13.63 5.56 0.08 -13.00 16 15 C -0.13 -1.89 4.94 -27.88 -0.14 -2.03 16 16 C -0.06 -0.78 1.66 -90.62 -0.15 -0.93 16 17 H 0.08 1.18 7.96 -51.93 -0.41 0.77 16 18 C -0.12 -1.66 4.68 -26.73 -0.13 -1.79 16 19 C -0.12 -1.36 5.92 -26.73 -0.16 -1.52 16 20 C -0.12 -1.11 5.66 -26.73 -0.15 -1.26 16 21 C -0.15 -1.41 5.60 -26.76 -0.15 -1.56 16 22 C 0.09 0.97 3.14 -67.74 -0.21 0.76 16 23 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 24 N -0.84 -7.88 8.45 -4.69 -0.04 -7.92 16 25 H 0.01 0.34 8.14 -51.92 -0.42 -0.08 16 26 H 0.09 2.45 6.07 -51.93 -0.32 2.13 16 27 H 0.02 0.61 8.14 -51.93 -0.42 0.19 16 28 H 0.26 7.14 8.31 -40.82 -0.34 6.80 16 29 H 0.39 7.25 8.54 -40.82 -0.35 6.90 16 30 H 0.08 1.11 8.14 -51.93 -0.42 0.68 16 31 H 0.09 1.31 7.76 -51.93 -0.40 0.91 16 32 H 0.05 0.70 6.57 -51.93 -0.34 0.35 16 33 H 0.09 1.56 5.95 -51.93 -0.31 1.25 16 34 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 35 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16 36 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 37 H 0.06 0.48 6.76 -51.93 -0.35 0.13 16 38 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 39 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 40 H 0.33 2.54 9.04 -39.29 -0.36 2.19 16 41 H 0.34 3.19 5.44 -39.29 -0.21 2.97 16 LS Contribution 315.28 15.07 4.75 4.75 Total: -1.00 -29.92 315.28 -8.07 -37.99 By element: Atomic # 1 Polarization: 17.37 SS G_CDS: -6.79 Total: 10.58 kcal Atomic # 6 Polarization: -6.76 SS G_CDS: -1.40 Total: -8.16 kcal Atomic # 7 Polarization: -48.37 SS G_CDS: 0.31 Total: -48.06 kcal Atomic # 8 Polarization: -13.08 SS G_CDS: 0.08 Total: -13.00 kcal Atomic # 14 Polarization: 20.92 SS G_CDS: -5.02 Total: 15.89 kcal Total LS contribution 4.75 Total: 4.75 kcal Total: -29.92 -8.07 -37.99 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000381245389.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.697 kcal (2) G-P(sol) polarization free energy of solvation -29.922 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.619 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.070 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.992 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.689 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds