Wall clock time and date at job start Mon Mar 30 2020 04:31:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46493 * 1 3 3 C 1.34775 * 120.00356 * 2 1 4 4 O 1.21276 * 120.00067 * 359.97438 * 3 2 1 5 5 C 1.50703 * 120.00348 * 179.97438 * 3 2 1 6 6 C 1.52994 * 109.47433 * 179.97438 * 5 3 2 7 7 H 1.08997 * 109.47053 * 304.99750 * 6 5 3 8 8 C 1.52999 * 109.47126 * 184.99823 * 6 5 3 9 9 N 1.46899 * 109.47333 * 64.99477 * 6 5 3 10 10 C 1.46897 * 111.00247 * 205.00173 * 9 6 5 11 11 H 1.09001 * 110.01414 * 326.39129 * 10 9 6 12 12 C 1.54260 * 110.07266 * 87.80861 * 10 9 6 13 13 C 1.54895 * 104.19599 * 142.91740 * 12 10 9 14 14 C 1.54895 * 102.74754 * 322.05782 * 13 12 10 15 15 H 1.08996 * 110.59814 * 279.20734 * 14 13 12 16 16 C 1.50701 * 110.48332 * 156.61759 * 14 13 12 17 17 H 1.08002 * 119.99761 * 245.22151 * 16 14 13 18 18 C 1.37871 * 119.99694 * 65.50714 * 16 14 13 19 19 N 1.31514 * 120.00482 * 359.71466 * 18 16 14 20 20 Si 1.86801 * 119.99746 * 179.72062 * 18 16 14 21 21 H 1.48494 * 109.47230 * 359.97438 * 20 18 16 22 22 H 1.48505 * 109.47301 * 119.99669 * 20 18 16 23 23 H 1.48498 * 109.47430 * 239.99516 * 20 18 16 24 24 C 1.53872 * 110.03309 * 205.00160 * 10 9 6 25 25 H 1.09007 * 109.46789 * 60.00273 * 1 2 3 26 26 H 1.08997 * 109.47343 * 180.02562 * 1 2 3 27 27 H 1.09000 * 109.47499 * 300.01004 * 1 2 3 28 28 H 0.97005 * 120.00053 * 179.97438 * 2 1 3 29 29 H 1.08999 * 109.46945 * 59.98960 * 5 3 2 30 30 H 1.09007 * 109.46830 * 299.99757 * 5 3 2 31 31 H 1.08997 * 109.47095 * 299.99901 * 8 6 5 32 32 H 1.09006 * 109.47074 * 60.00000 * 8 6 5 33 33 H 1.08997 * 109.47042 * 179.97438 * 8 6 5 34 34 H 1.00903 * 111.00122 * 328.96239 * 9 6 5 35 35 H 1.08993 * 110.49279 * 261.59464 * 12 10 9 36 36 H 1.09001 * 110.48691 * 24.11082 * 12 10 9 37 37 H 1.09002 * 110.75577 * 203.74499 * 13 12 10 38 38 H 1.08995 * 110.75501 * 80.36863 * 13 12 10 39 39 H 0.96995 * 120.00207 * 179.97438 * 19 18 16 40 40 H 1.09004 * 110.03481 * 121.38225 * 24 10 9 41 41 H 1.09002 * 110.07465 * 359.97325 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1389 1.1671 0.0000 4 8 1.5326 2.2175 -0.0005 5 6 3.6459 1.1671 0.0006 6 6 4.1560 2.6096 -0.0002 7 1 3.7217 3.1480 -0.8425 8 6 5.6808 2.6112 -0.1253 9 7 3.7668 3.2673 1.2544 10 6 3.6881 4.7241 1.0827 11 1 4.4387 5.0563 0.3655 12 6 2.2797 5.1247 0.5974 13 6 1.9927 6.4611 1.3260 14 6 2.6185 6.2295 2.7239 15 1 1.9428 5.6534 3.3559 16 6 2.9547 7.5460 3.3758 17 1 3.9848 7.8031 3.5736 18 6 1.9468 8.4194 3.7252 19 7 0.6924 8.1062 3.4844 20 14 2.3629 10.0478 4.5404 21 1 3.8350 10.1595 4.7001 22 1 1.8702 11.1649 3.6950 23 1 1.7144 10.1135 5.8747 24 6 3.9036 5.4265 2.4347 25 1 -0.3633 0.5138 -0.8901 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3634 0.5140 0.8899 28 1 1.9500 -0.8401 0.0004 29 1 4.0096 0.6529 -0.8891 30 1 4.0089 0.6535 0.8909 31 1 6.1151 2.0728 0.7171 32 1 5.9696 2.1232 -1.0563 33 1 6.0442 3.6389 -0.1263 34 1 2.8951 2.8964 1.6018 35 1 2.2754 5.2706 -0.4827 36 1 1.5486 4.3681 0.8822 37 1 0.9196 6.6342 1.4071 38 1 2.4817 7.2914 0.8167 39 1 -0.0167 8.7206 3.7306 40 1 4.7587 6.0997 2.3736 41 1 4.0662 4.6870 3.2188 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000382339313.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:31:15 Heat of formation + Delta-G solvation = -57.228281 kcal Electronic energy + Delta-G solvation = -19563.977503 eV Core-core repulsion = 16670.737022 eV Total energy + Delta-G solvation = -2893.240482 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 254.174 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -39.94611 -37.72843 -35.33116 -34.57228 -32.41134 -30.25985 -28.63958 -27.77615 -26.33028 -25.61655 -23.35334 -21.14592 -20.11952 -19.33929 -18.65056 -17.33097 -16.41746 -16.03613 -15.86812 -15.01154 -14.65243 -14.33326 -14.13755 -13.51350 -13.15714 -12.90693 -12.44113 -12.29083 -12.14234 -11.96103 -11.94002 -11.84109 -11.32025 -11.00099 -10.90708 -10.61046 -10.50879 -10.36970 -9.90830 -9.74228 -9.48672 -9.33849 -9.24654 -8.94554 -8.58515 -8.20906 -7.73231 -5.85889 -3.87866 2.60645 3.10921 3.38089 3.45652 3.50104 4.55198 4.58893 4.66186 4.83352 5.06328 5.28665 5.38346 5.40192 5.46420 5.61808 5.66785 5.72935 5.79901 5.89974 5.99393 6.19543 6.22124 6.26859 6.42352 6.59716 6.81527 6.95091 7.00903 7.08510 7.28549 7.31838 7.41943 7.56765 7.81206 7.89549 7.98951 8.08115 8.20250 8.22754 8.64689 9.16049 9.75132 11.23658 Molecular weight = 254.17amu Principal moments of inertia in cm(-1) A = 0.029285 B = 0.004894 C = 0.004369 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 955.880333 B = 5720.176818 C = 6407.574673 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.087 3.913 2 N -0.741 5.741 3 C 0.503 3.497 4 O -0.521 6.521 5 C -0.143 4.143 6 C 0.095 3.905 7 H 0.049 0.951 8 C -0.138 4.138 9 N -0.677 5.677 10 C 0.088 3.912 11 H 0.060 0.940 12 C -0.147 4.147 13 C -0.098 4.098 14 C 0.047 3.953 15 H 0.027 0.973 16 C -0.508 4.508 17 H 0.054 0.946 18 C 0.060 3.940 19 N -0.891 5.891 20 Si 0.886 3.114 21 H -0.274 1.274 22 H -0.286 1.286 23 H -0.286 1.286 24 C -0.105 4.105 25 H 0.058 0.942 26 H 0.071 0.929 27 H 0.061 0.939 28 H 0.399 0.601 29 H 0.094 0.906 30 H 0.100 0.900 31 H 0.060 0.940 32 H 0.049 0.951 33 H 0.058 0.942 34 H 0.343 0.657 35 H 0.036 0.964 36 H 0.067 0.933 37 H 0.061 0.939 38 H 0.043 0.957 39 H 0.257 0.743 40 H 0.051 0.949 41 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.118 -18.531 -8.899 20.965 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 N -0.394 5.394 3 C 0.289 3.711 4 O -0.396 6.396 5 C -0.184 4.184 6 C -0.016 4.016 7 H 0.067 0.933 8 C -0.196 4.196 9 N -0.310 5.310 10 C -0.021 4.021 11 H 0.078 0.922 12 C -0.186 4.186 13 C -0.137 4.137 14 C 0.028 3.972 15 H 0.045 0.955 16 C -0.547 4.547 17 H 0.073 0.927 18 C -0.141 4.141 19 N -0.530 5.530 20 Si 0.714 3.286 21 H -0.198 1.198 22 H -0.212 1.212 23 H -0.212 1.212 24 C -0.143 4.143 25 H 0.077 0.923 26 H 0.090 0.910 27 H 0.080 0.920 28 H 0.232 0.768 29 H 0.113 0.887 30 H 0.118 0.882 31 H 0.079 0.921 32 H 0.068 0.932 33 H 0.077 0.923 34 H 0.163 0.837 35 H 0.055 0.945 36 H 0.086 0.914 37 H 0.080 0.920 38 H 0.062 0.938 39 H 0.066 0.934 40 H 0.069 0.931 41 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 4.125 -17.679 -8.628 20.099 hybrid contribution -0.588 0.530 -0.151 0.806 sum 3.537 -17.148 -8.779 19.587 Atomic orbital electron populations 1.21517 0.79779 1.01865 1.02579 1.45856 1.07738 1.08752 1.77011 1.20955 0.90618 0.83693 0.75787 1.90794 1.70377 1.30731 1.47690 1.21941 0.91417 1.00440 1.04585 1.21222 0.95356 0.91349 0.93658 0.93310 1.21802 0.94824 1.02338 1.00675 1.60979 1.38545 1.05144 1.26304 1.22259 0.96024 0.85799 0.98044 0.92170 1.23086 0.97030 1.00344 0.98167 1.22379 1.01100 0.92988 0.97244 1.19446 0.90970 0.94099 0.92641 0.95468 1.21294 0.92696 1.02036 1.38635 0.92747 1.24991 0.95117 0.98078 0.95888 1.69991 0.98827 1.36225 1.47963 0.86630 0.78438 0.84342 0.79142 1.19839 1.21206 1.21192 1.22273 1.00298 0.97442 0.94295 0.92341 0.90985 0.92014 0.76764 0.88745 0.88156 0.92115 0.93206 0.92272 0.83684 0.94533 0.91445 0.92004 0.93848 0.93353 0.93061 0.93000 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.74 10.70 59.84 0.64 1.38 16 2 N -0.74 -6.48 5.71 -67.08 -0.38 -6.86 16 3 C 0.50 6.16 7.30 -10.98 -0.08 6.08 16 4 O -0.52 -8.87 12.78 5.56 0.07 -8.79 16 5 C -0.14 -1.44 5.30 -27.88 -0.15 -1.58 16 6 C 0.09 1.28 2.05 -67.72 -0.14 1.15 16 7 H 0.05 0.76 7.59 -51.93 -0.39 0.36 16 8 C -0.14 -1.60 9.40 37.16 0.35 -1.26 16 9 N -0.68 -11.45 5.85 -98.58 -0.58 -12.03 16 10 C 0.09 1.75 3.01 -66.60 -0.20 1.55 16 11 H 0.06 1.16 7.16 -51.93 -0.37 0.78 16 12 C -0.15 -3.20 6.09 -25.07 -0.15 -3.35 16 13 C -0.10 -2.51 5.75 -24.73 -0.14 -2.66 16 14 C 0.05 1.26 2.72 -90.11 -0.25 1.01 16 15 H 0.03 0.80 8.14 -51.93 -0.42 0.37 16 16 C -0.51 -14.73 8.46 -34.44 -0.29 -15.02 16 17 H 0.05 1.56 7.54 -52.49 -0.40 1.16 16 18 C 0.06 1.75 5.35 -17.82 -0.10 1.66 16 19 N -0.89 -26.99 12.30 55.43 0.68 -26.31 16 20 Si 0.89 22.19 29.54 -169.99 -5.02 17.17 16 21 H -0.27 -6.73 7.11 56.52 0.40 -6.33 16 22 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 23 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 24 C -0.10 -2.38 6.15 -25.61 -0.16 -2.53 16 25 H 0.06 0.56 8.14 -51.92 -0.42 0.14 16 26 H 0.07 0.38 8.14 -51.93 -0.42 -0.05 16 27 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 28 H 0.40 2.10 8.83 -40.82 -0.36 1.74 16 29 H 0.09 0.68 8.14 -51.93 -0.42 0.26 16 30 H 0.10 0.88 8.14 -51.92 -0.42 0.45 16 31 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 32 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 33 H 0.06 0.77 7.46 -51.93 -0.39 0.38 16 34 H 0.34 6.21 5.90 -39.29 -0.23 5.98 16 35 H 0.04 0.76 8.14 -51.93 -0.42 0.34 16 36 H 0.07 1.53 6.01 -51.93 -0.31 1.22 16 37 H 0.06 1.72 7.56 -51.93 -0.39 1.32 16 38 H 0.04 1.13 8.05 -51.93 -0.42 0.71 16 39 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 40 H 0.05 1.16 7.66 -51.93 -0.40 0.77 16 41 H 0.05 1.15 7.92 -51.93 -0.41 0.74 16 LS Contribution 323.06 15.07 4.87 4.87 Total: -1.00 -32.99 323.06 -8.03 -41.03 By element: Atomic # 1 Polarization: 11.52 SS G_CDS: -7.01 Total: 4.51 kcal Atomic # 6 Polarization: -12.92 SS G_CDS: -0.66 Total: -13.58 kcal Atomic # 7 Polarization: -44.92 SS G_CDS: -0.28 Total: -45.20 kcal Atomic # 8 Polarization: -8.87 SS G_CDS: 0.07 Total: -8.79 kcal Atomic # 14 Polarization: 22.19 SS G_CDS: -5.02 Total: 17.17 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -32.99 -8.03 -41.03 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000382339313.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.199 kcal (2) G-P(sol) polarization free energy of solvation -32.995 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.194 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.034 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.029 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.228 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds