Wall clock time and date at job start Mon Mar 30 2020 04:17:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09003 * 109.47455 * 2 1 4 4 C 1.53005 * 109.47017 * 239.99710 * 2 1 3 5 5 C 1.50704 * 109.46627 * 62.89806 * 4 2 1 6 6 H 1.07995 * 120.00510 * 5.56549 * 5 4 2 7 7 C 1.37882 * 119.99505 * 185.56674 * 5 4 2 8 8 N 1.31514 * 120.00222 * 0.02562 * 7 5 4 9 9 Si 1.86796 * 119.99736 * 179.97438 * 7 5 4 10 10 H 1.48503 * 109.47252 * 0.02562 * 9 7 5 11 11 H 1.48500 * 109.47223 * 120.00180 * 9 7 5 12 12 H 1.48503 * 109.47183 * 239.99988 * 9 7 5 13 13 N 1.46904 * 109.47017 * 119.99999 * 2 1 3 14 14 C 1.46606 * 110.99664 * 173.67678 * 13 2 1 15 15 C 1.53716 * 110.95594 * 180.02562 * 14 13 2 16 16 N 1.45469 * 107.57329 * 304.05493 * 15 14 13 17 17 C 1.46163 * 117.92487 * 183.54483 * 16 15 14 18 18 C 1.54888 * 105.84046 * 207.64084 * 17 16 15 19 19 H 1.09002 * 110.34012 * 245.08394 * 18 17 16 20 20 O 1.42896 * 110.34215 * 122.93676 * 18 17 16 21 21 C 1.55405 * 104.97310 * 3.95472 * 18 17 16 22 22 C 1.48798 * 109.32068 * 63.26720 * 16 15 14 23 23 H 1.09002 * 111.10651 * 53.84953 * 22 16 15 24 24 C 1.47555 * 110.99881 * 299.83933 * 13 2 1 25 25 H 1.09000 * 109.47242 * 300.00244 * 1 2 3 26 26 H 1.09000 * 109.47308 * 59.99972 * 1 2 3 27 27 H 1.09003 * 109.47455 * 179.97438 * 1 2 3 28 28 H 1.08992 * 109.46993 * 182.89510 * 4 2 1 29 29 H 1.08996 * 109.46833 * 302.90146 * 4 2 1 30 30 H 0.97001 * 120.00162 * 179.97438 * 8 7 5 31 31 H 1.08996 * 109.18331 * 300.40896 * 14 13 2 32 32 H 1.08995 * 109.17862 * 59.69708 * 14 13 2 33 33 H 1.08994 * 109.83944 * 184.53591 * 15 14 13 34 34 H 1.09006 * 109.83589 * 63.56925 * 15 14 13 35 35 H 1.08998 * 110.17851 * 326.73596 * 17 16 15 36 36 H 1.09003 * 110.17578 * 88.54690 * 17 16 15 37 37 H 0.96702 * 113.99763 * 61.45094 * 20 18 17 38 38 H 1.08998 * 110.92472 * 140.44469 * 21 18 17 39 39 H 1.08999 * 110.92800 * 264.10592 * 21 18 17 40 40 H 1.09001 * 109.86254 * 57.57463 * 24 13 2 41 41 H 1.09004 * 109.92377 * 296.57574 * 24 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2493 5 6 1.5970 0.0294 -2.4787 6 1 1.0887 0.9770 -2.3789 7 6 1.8409 -0.4937 -3.7309 8 7 2.4595 -1.6479 -3.8524 9 14 1.2913 0.4364 -5.2547 10 1 0.6225 1.6990 -4.8497 11 1 2.4739 0.7511 -6.0960 12 1 0.3411 -0.4011 -6.0300 13 7 2.0196 -0.6925 1.1995 14 6 3.4773 -0.8440 1.1603 15 6 3.9886 -1.5693 2.4155 16 7 3.5260 -0.8211 3.5741 17 6 3.9545 -1.2730 4.8964 18 6 2.8416 -0.8267 5.8769 19 1 3.2281 -0.0860 6.5770 20 8 2.3218 -1.9540 6.5846 21 6 1.7423 -0.1972 4.9768 22 6 2.0387 -0.8424 3.6122 23 1 1.6596 -1.8636 3.5727 24 6 1.5496 -0.0212 2.4265 25 1 -0.3634 0.5139 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3634 -1.0277 -0.0005 28 1 3.1286 -0.7665 -1.2237 29 1 1.6347 -1.7328 -1.2755 30 1 2.6307 -2.0161 -4.7333 31 1 3.7540 -1.4190 0.2767 32 1 3.9384 0.1421 1.1046 33 1 5.0780 -1.6009 2.4065 34 1 3.5885 -2.5828 2.4458 35 1 4.0536 -2.3584 4.9090 36 1 4.9018 -0.8053 5.1648 37 1 2.9767 -2.4136 7.1278 38 1 0.7475 -0.4703 5.3288 39 1 1.8526 0.8860 4.9275 40 1 0.4605 0.0229 2.4306 41 1 1.9611 0.9868 2.4793 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000594026069.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:17:10 Heat of formation + Delta-G solvation = -60.878573 kcal Electronic energy + Delta-G solvation = -19775.083599 eV Core-core repulsion = 16881.684829 eV Total energy + Delta-G solvation = -2893.398770 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 254.174 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.21217 -38.82932 -36.84989 -35.00925 -33.59334 -32.68635 -29.78037 -29.48066 -28.09536 -25.93902 -24.20567 -23.43167 -21.91462 -20.94931 -20.60174 -18.68609 -18.43654 -17.10894 -16.61219 -16.42852 -15.86766 -15.77873 -15.66251 -15.18401 -14.73133 -14.43342 -14.29220 -14.13026 -13.66974 -13.31670 -13.03992 -12.96749 -12.87366 -12.66845 -12.47843 -12.24970 -12.11304 -12.07916 -11.77740 -11.62823 -11.52968 -11.13971 -10.95918 -10.92607 -10.51371 -9.40529 -9.11519 -8.17711 -6.27071 1.40451 1.40854 1.53816 2.41233 2.83619 2.97594 3.16101 3.36900 3.56070 3.74022 3.93821 4.14019 4.20956 4.23746 4.27502 4.36874 4.40507 4.56891 4.58159 4.66983 4.70537 4.72075 4.87006 4.91675 4.94122 5.02796 5.05183 5.12613 5.20826 5.23296 5.42919 5.49014 5.71069 5.78740 5.85489 6.11648 6.19541 6.37684 6.39849 6.88659 6.88881 7.40947 8.94721 Molecular weight = 254.17amu Principal moments of inertia in cm(-1) A = 0.049095 B = 0.004424 C = 0.004200 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 570.191188 B = 6327.582910 C = 6664.804831 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C 0.099 3.901 3 H 0.018 0.982 4 C 0.040 3.960 5 C -0.531 4.531 6 H 0.061 0.939 7 C 0.002 3.998 8 N -0.933 5.933 9 Si 0.962 3.038 10 H -0.261 1.261 11 H -0.280 1.280 12 H -0.279 1.279 13 N -0.554 5.554 14 C 0.068 3.932 15 C 0.075 3.925 16 N -0.547 5.547 17 C 0.020 3.980 18 C 0.101 3.899 19 H 0.092 0.908 20 O -0.581 6.581 21 C -0.104 4.104 22 C 0.073 3.927 23 H 0.045 0.955 24 C 0.072 3.928 25 H 0.065 0.935 26 H 0.054 0.946 27 H 0.044 0.956 28 H -0.008 1.008 29 H -0.007 1.007 30 H 0.262 0.738 31 H 0.062 0.938 32 H 0.024 0.976 33 H 0.092 0.908 34 H 0.030 0.970 35 H 0.045 0.955 36 H 0.096 0.904 37 H 0.396 0.604 38 H 0.085 0.915 39 H 0.098 0.902 40 H 0.087 0.913 41 H 0.038 0.962 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.511 2.533 20.307 20.520 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.009 4.009 3 H 0.036 0.964 4 C 0.002 3.998 5 C -0.569 4.569 6 H 0.079 0.921 7 C -0.196 4.196 8 N -0.574 5.574 9 Si 0.787 3.213 10 H -0.185 1.185 11 H -0.206 1.206 12 H -0.205 1.205 13 N -0.280 5.280 14 C -0.061 4.061 15 C -0.053 4.053 16 N -0.273 5.273 17 C -0.108 4.108 18 C 0.042 3.958 19 H 0.110 0.890 20 O -0.390 6.390 21 C -0.142 4.142 22 C -0.035 4.035 23 H 0.063 0.937 24 C -0.055 4.055 25 H 0.084 0.916 26 H 0.073 0.927 27 H 0.064 0.936 28 H 0.010 0.990 29 H 0.011 0.989 30 H 0.071 0.929 31 H 0.080 0.920 32 H 0.043 0.957 33 H 0.110 0.890 34 H 0.049 0.951 35 H 0.063 0.937 36 H 0.115 0.885 37 H 0.246 0.754 38 H 0.103 0.897 39 H 0.116 0.884 40 H 0.105 0.895 41 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges 1.072 2.600 19.816 20.015 hybrid contribution 0.689 -0.244 -1.045 1.275 sum 1.761 2.356 18.771 19.000 Atomic orbital electron populations 1.21650 0.93763 1.01285 1.01132 1.21510 0.96149 0.93995 0.89243 0.96375 1.19030 0.94364 0.94820 0.91548 1.21603 1.37312 1.06139 0.91860 0.92105 1.25912 0.95298 0.95829 1.02560 1.70116 1.43167 1.19840 1.24227 0.85442 0.78042 0.78915 0.78915 1.18500 1.20579 1.20487 1.61644 1.11059 1.52809 1.02454 1.22018 0.87684 0.98800 0.97585 1.21896 1.00205 0.94378 0.88866 1.62771 1.07746 1.54420 1.02409 1.23374 0.99976 0.98965 0.88490 1.22928 0.92386 0.87945 0.92529 0.89025 1.86514 1.41943 1.45496 1.64998 1.22397 0.99322 1.00734 0.91790 1.22549 0.87910 0.98071 0.94972 0.93733 1.22079 1.00319 0.95210 0.87919 0.91577 0.92657 0.93650 0.98976 0.98853 0.92920 0.91970 0.95732 0.89010 0.95145 0.93655 0.88534 0.75400 0.89682 0.88369 0.89469 0.94370 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.70 8.76 71.98 0.63 -4.07 16 2 C 0.10 4.29 2.16 44.92 0.10 4.39 16 3 H 0.02 0.82 8.14 -2.39 -0.02 0.80 16 4 C 0.04 2.15 4.12 29.85 0.12 2.27 16 5 C -0.53 -30.29 8.28 25.60 0.21 -30.08 16 6 H 0.06 3.34 7.13 -2.91 -0.02 3.32 16 7 C 0.00 0.09 5.46 84.66 0.46 0.55 16 8 N -0.93 -57.42 13.29 21.45 0.28 -57.13 16 9 Si 0.96 44.64 29.54 68.60 2.03 46.67 16 10 H -0.26 -11.51 7.11 99.48 0.71 -10.80 16 11 H -0.28 -12.71 7.11 99.48 0.71 -12.00 16 12 H -0.28 -12.66 7.11 99.48 0.71 -11.95 16 13 N -0.55 -21.20 4.50 -869.93 -3.91 -25.12 16 14 C 0.07 2.52 5.10 86.60 0.44 2.96 16 15 C 0.08 2.23 6.04 86.81 0.52 2.76 16 16 N -0.55 -14.32 4.65 -866.18 -4.03 -18.35 16 17 C 0.02 0.38 6.68 87.09 0.58 0.96 16 18 C 0.10 1.71 4.39 32.07 0.14 1.85 16 19 H 0.09 1.14 8.14 -2.39 -0.02 1.12 16 20 O -0.58 -10.09 13.30 -148.98 -1.98 -12.07 16 21 C -0.10 -2.10 6.37 31.70 0.20 -1.90 16 22 C 0.07 1.96 2.76 44.59 0.12 2.09 16 23 H 0.04 1.38 8.09 -2.39 -0.02 1.37 16 24 C 0.07 2.21 4.93 85.94 0.42 2.64 16 25 H 0.07 2.09 6.36 -2.39 -0.02 2.08 16 26 H 0.05 2.25 6.92 -2.39 -0.02 2.24 16 27 H 0.04 1.82 8.14 -2.39 -0.02 1.80 16 28 H -0.01 -0.46 6.14 -2.39 -0.01 -0.47 16 29 H -0.01 -0.42 8.14 -2.39 -0.02 -0.44 16 30 H 0.26 15.13 8.31 -92.71 -0.77 14.36 16 31 H 0.06 2.66 6.09 -2.39 -0.01 2.64 16 32 H 0.02 0.94 8.14 -2.39 -0.02 0.92 16 33 H 0.09 2.38 8.14 -2.39 -0.02 2.36 16 34 H 0.03 0.96 8.08 -2.38 -0.02 0.94 16 35 H 0.05 0.89 7.91 -2.39 -0.02 0.87 16 36 H 0.10 1.53 8.14 -2.39 -0.02 1.51 16 37 H 0.40 3.28 9.11 -74.06 -0.67 2.61 16 38 H 0.08 1.69 8.09 -2.39 -0.02 1.67 16 39 H 0.10 1.77 8.11 -2.39 -0.02 1.75 16 40 H 0.09 2.49 6.22 -2.39 -0.01 2.48 16 41 H 0.04 1.18 8.14 -2.39 -0.02 1.16 16 Total: -1.00 -67.94 313.36 -3.32 -71.26 By element: Atomic # 1 Polarization: 9.99 SS G_CDS: 0.33 Total: 10.32 kcal Atomic # 6 Polarization: -19.54 SS G_CDS: 3.96 Total: -15.58 kcal Atomic # 7 Polarization: -92.94 SS G_CDS: -7.66 Total: -100.60 kcal Atomic # 8 Polarization: -10.09 SS G_CDS: -1.98 Total: -12.07 kcal Atomic # 14 Polarization: 44.64 SS G_CDS: 2.03 Total: 46.67 kcal Total: -67.94 -3.32 -71.26 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594026069.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.380 kcal (2) G-P(sol) polarization free energy of solvation -67.936 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.556 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.323 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.258 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.879 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds