Wall clock time and date at job start Mon Mar 30 2020 04:36:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08997 * 109.47031 * 2 1 4 4 C 1.50707 * 109.47173 * 119.99478 * 2 1 3 5 5 H 1.08003 * 119.99815 * 119.99602 * 4 2 1 6 6 C 1.37871 * 120.00139 * 300.00439 * 4 2 1 7 7 N 1.31519 * 120.00262 * 359.97438 * 6 4 2 8 8 Si 1.86794 * 120.00129 * 179.97438 * 6 4 2 9 9 H 1.48502 * 109.47138 * 359.97438 * 8 6 4 10 10 H 1.48511 * 109.47412 * 119.99730 * 8 6 4 11 11 H 1.48498 * 109.47264 * 239.99698 * 8 6 4 12 12 C 1.50703 * 109.47372 * 239.99453 * 2 1 3 13 13 O 1.21279 * 120.00124 * 256.08479 * 12 2 1 14 14 N 1.34776 * 119.99777 * 76.08236 * 12 2 1 15 15 C 1.47429 * 125.64914 * 354.48008 * 14 12 2 16 16 C 1.54903 * 104.83352 * 204.39596 * 15 14 12 17 17 C 1.55154 * 101.58009 * 322.98945 * 16 15 14 18 18 C 1.47023 * 125.65038 * 174.79500 * 14 12 2 19 19 H 1.08997 * 109.87925 * 59.09727 * 18 14 12 20 20 C 1.52997 * 109.87732 * 298.09202 * 18 14 12 21 21 N 1.46905 * 109.46910 * 174.30076 * 20 18 14 22 22 C 1.46899 * 110.99882 * 163.98513 * 21 20 18 23 23 C 1.46901 * 110.99899 * 287.93519 * 21 20 18 24 24 H 1.09005 * 109.47083 * 305.87413 * 1 2 3 25 25 H 1.08995 * 109.47222 * 65.87450 * 1 2 3 26 26 H 1.09004 * 109.46998 * 185.87556 * 1 2 3 27 27 H 0.96999 * 120.00586 * 180.02562 * 7 6 4 28 28 H 1.08998 * 110.36766 * 323.24150 * 15 14 12 29 29 H 1.09002 * 110.36537 * 85.55256 * 15 14 12 30 30 H 1.09003 * 111.00297 * 204.92117 * 16 15 14 31 31 H 1.08994 * 111.03910 * 81.08309 * 16 15 14 32 32 H 1.08998 * 110.72573 * 277.13891 * 17 16 15 33 33 H 1.09006 * 110.71826 * 153.86452 * 17 16 15 34 34 H 1.08997 * 109.47470 * 294.30149 * 20 18 14 35 35 H 1.09001 * 109.47321 * 54.30287 * 20 18 14 36 36 H 1.08997 * 109.47670 * 60.00218 * 22 21 20 37 37 H 1.09006 * 109.46842 * 180.02562 * 22 21 20 38 38 H 1.09004 * 109.46902 * 299.99636 * 22 21 20 39 39 H 1.09009 * 109.46902 * 59.81445 * 23 21 20 40 40 H 1.08999 * 109.47214 * 179.81427 * 23 21 20 41 41 H 1.08994 * 109.47043 * 299.81922 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0324 -0.7103 1.2306 5 1 2.6532 -1.5885 1.1315 6 6 1.6992 -0.2393 2.4828 7 7 0.9435 0.8303 2.6034 8 14 2.3213 -1.1201 4.0080 9 1 3.1455 -2.2875 3.6039 10 1 3.1466 -0.1870 4.8166 11 1 1.1660 -1.5864 4.8162 12 6 2.0324 -0.7105 -1.2304 13 8 2.4727 -1.8372 -1.1428 14 7 1.9923 -0.0939 -2.4282 15 6 1.3819 1.2207 -2.6978 16 6 1.0334 1.1940 -4.2069 17 6 2.2360 0.4064 -4.7905 18 6 2.5445 -0.6237 -3.6836 19 1 2.0752 -1.5784 -3.9211 20 6 4.0576 -0.8068 -3.5501 21 7 4.5798 -1.4622 -4.7567 22 6 6.0391 -1.3180 -4.8443 23 6 4.1871 -2.8771 -4.7990 24 1 -0.3633 0.6022 0.8328 25 1 -0.3633 0.4200 -0.9378 26 1 -0.3633 -1.0223 0.1052 27 1 0.7094 1.1620 3.4844 28 1 0.4782 1.3487 -2.1019 29 1 2.0928 2.0195 -2.4867 30 1 0.9919 2.2034 -4.6162 31 1 0.0971 0.6645 -4.3830 32 1 3.0882 1.0667 -4.9510 33 1 1.9556 -0.0953 -5.7167 34 1 4.5323 0.1671 -3.4312 35 1 4.2733 -1.4249 -2.6786 36 1 6.5026 -1.7750 -3.9700 37 1 6.3994 -1.8118 -5.7468 38 1 6.2980 -0.2598 -4.8815 39 1 3.0997 -2.9525 -4.7999 40 1 4.5840 -3.3374 -5.7039 41 1 4.5862 -3.3912 -3.9247 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597092670.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:36:26 Heat of formation + Delta-G solvation = -53.991841 kcal Electronic energy + Delta-G solvation = -19995.550233 eV Core-core repulsion = 17102.450094 eV Total energy + Delta-G solvation = -2893.100139 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 254.174 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.21702 -38.88064 -37.55006 -35.81520 -33.12134 -31.86483 -31.06531 -28.54961 -27.32191 -26.85511 -25.30016 -23.23990 -22.71218 -21.46950 -19.87325 -18.36319 -17.69798 -17.53715 -16.70270 -16.29667 -15.95479 -15.79848 -15.36762 -15.11223 -14.68018 -14.44110 -14.12484 -13.77509 -13.59169 -13.42829 -13.13379 -12.97473 -12.79313 -12.69369 -12.62823 -12.56834 -12.39025 -12.25320 -12.07571 -11.85748 -11.71332 -11.49990 -11.06277 -10.62592 -10.31404 -9.62045 -9.36017 -8.18847 -6.29013 1.35946 1.37710 1.50995 1.87170 2.12948 2.42759 3.05039 3.10575 3.65413 3.72615 3.90434 4.18765 4.22603 4.26741 4.33606 4.43447 4.44859 4.57653 4.66097 4.69405 4.74610 4.78677 4.86113 4.93350 4.95187 4.96005 5.04826 5.10009 5.14291 5.20875 5.39098 5.44687 5.57634 5.70120 5.87210 5.95866 6.00995 6.17569 6.66552 6.79946 7.36371 7.48295 8.87789 Molecular weight = 254.17amu Principal moments of inertia in cm(-1) A = 0.023987 B = 0.006170 C = 0.005243 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1167.010637 B = 4536.768617 C = 5338.750295 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C 0.034 3.966 3 H 0.037 0.963 4 C -0.530 4.530 5 H 0.042 0.958 6 C 0.022 3.978 7 N -0.909 5.909 8 Si 0.955 3.045 9 H -0.282 1.282 10 H -0.271 1.271 11 H -0.272 1.272 12 C 0.534 3.466 13 O -0.589 6.589 14 N -0.625 5.625 15 C 0.087 3.913 16 C -0.122 4.122 17 C -0.097 4.097 18 C 0.135 3.865 19 H 0.053 0.947 20 C 0.053 3.947 21 N -0.535 5.535 22 C 0.023 3.977 23 C 0.024 3.976 24 H 0.072 0.928 25 H 0.051 0.949 26 H 0.017 0.983 27 H 0.266 0.734 28 H 0.077 0.923 29 H 0.071 0.929 30 H 0.114 0.886 31 H 0.077 0.923 32 H 0.086 0.914 33 H 0.096 0.904 34 H 0.076 0.924 35 H 0.004 0.996 36 H 0.011 0.989 37 H 0.091 0.909 38 H 0.078 0.922 39 H 0.062 0.938 40 H 0.094 0.906 41 H 0.005 0.995 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.864 2.591 -17.397 17.821 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.013 3.987 3 H 0.055 0.945 4 C -0.569 4.569 5 H 0.061 0.939 6 C -0.178 4.178 7 N -0.548 5.548 8 Si 0.781 3.219 9 H -0.208 1.208 10 H -0.196 1.196 11 H -0.197 1.197 12 C 0.325 3.675 13 O -0.469 6.469 14 N -0.359 5.359 15 C -0.035 4.035 16 C -0.159 4.159 17 C -0.135 4.135 18 C 0.031 3.969 19 H 0.071 0.929 20 C -0.076 4.076 21 N -0.259 5.259 22 C -0.125 4.125 23 C -0.124 4.124 24 H 0.091 0.909 25 H 0.070 0.930 26 H 0.036 0.964 27 H 0.075 0.925 28 H 0.095 0.905 29 H 0.090 0.910 30 H 0.132 0.868 31 H 0.096 0.904 32 H 0.105 0.895 33 H 0.114 0.886 34 H 0.095 0.905 35 H 0.022 0.978 36 H 0.030 0.970 37 H 0.109 0.891 38 H 0.096 0.904 39 H 0.081 0.919 40 H 0.112 0.888 41 H 0.024 0.976 Dipole moment (debyes) X Y Z Total from point charges 2.816 2.313 -17.544 17.918 hybrid contribution 0.742 -1.133 2.135 2.528 sum 3.558 1.179 -15.409 15.859 Atomic orbital electron populations 1.21570 0.95157 0.99665 1.00944 1.18727 0.95169 0.95630 0.89219 0.94506 1.21259 1.31884 1.12452 0.91265 0.93950 1.25581 0.95132 0.95729 1.01322 1.69956 1.37067 1.23418 1.24349 0.85551 0.78432 0.78544 0.79397 1.20755 1.19597 1.19743 1.21370 0.76223 0.85523 0.84368 1.90489 1.48866 1.21118 1.86421 1.48804 1.58219 1.21524 1.07380 1.22663 0.98282 0.83948 0.98575 1.22829 0.98427 1.02826 0.91860 1.22496 0.98689 0.96146 0.96161 1.21586 0.92238 0.98402 0.84636 0.92905 1.22342 0.95912 0.98825 0.90533 1.62033 1.12674 1.14299 1.36873 1.22482 0.86013 1.02954 1.01024 1.22449 1.01409 0.87782 1.00788 0.90904 0.93040 0.96377 0.92471 0.90467 0.91045 0.86783 0.90432 0.89540 0.88556 0.90542 0.97761 0.97043 0.89080 0.90354 0.91929 0.88750 0.97590 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.56 8.71 71.98 0.63 -4.94 16 2 C 0.03 1.77 1.99 -12.28 -0.02 1.75 16 3 H 0.04 1.99 7.92 -2.39 -0.02 1.97 16 4 C -0.53 -31.81 8.35 25.60 0.21 -31.59 16 5 H 0.04 2.74 6.87 -2.91 -0.02 2.72 16 6 C 0.02 1.25 5.30 84.65 0.45 1.69 16 7 N -0.91 -51.68 11.39 21.45 0.24 -51.43 16 8 Si 0.96 45.81 29.54 68.60 2.03 47.84 16 9 H -0.28 -13.93 7.11 99.48 0.71 -13.22 16 10 H -0.27 -12.34 7.11 99.48 0.71 -11.63 16 11 H -0.27 -12.49 7.11 99.48 0.71 -11.79 16 12 C 0.53 26.25 6.76 87.66 0.59 26.84 16 13 O -0.59 -33.36 14.81 -3.03 -0.04 -33.40 16 14 N -0.62 -23.42 3.06 -788.07 -2.41 -25.84 16 15 C 0.09 2.48 6.44 86.85 0.56 3.04 16 16 C -0.12 -2.36 7.08 31.98 0.23 -2.13 16 17 C -0.10 -2.03 6.30 31.78 0.20 -1.83 16 18 C 0.13 4.21 2.90 45.34 0.13 4.34 16 19 H 0.05 1.81 6.57 -2.39 -0.02 1.79 16 20 C 0.05 1.70 4.39 86.30 0.38 2.08 16 21 N -0.53 -13.66 4.79 -948.83 -4.55 -18.21 16 22 C 0.02 0.49 9.54 127.69 1.22 1.71 16 23 C 0.02 0.60 9.39 127.69 1.20 1.80 16 24 H 0.07 3.76 6.25 -2.38 -0.01 3.74 16 25 H 0.05 2.05 5.73 -2.39 -0.01 2.03 16 26 H 0.02 0.88 8.14 -2.38 -0.02 0.86 16 27 H 0.27 14.20 8.31 -92.71 -0.77 13.43 16 28 H 0.08 2.31 5.42 -2.39 -0.01 2.30 16 29 H 0.07 1.93 8.14 -2.39 -0.02 1.91 16 30 H 0.11 1.51 8.14 -2.39 -0.02 1.49 16 31 H 0.08 1.47 8.14 -2.39 -0.02 1.45 16 32 H 0.09 1.65 7.76 -2.39 -0.02 1.63 16 33 H 0.10 1.71 8.14 -2.38 -0.02 1.69 16 34 H 0.08 2.32 7.82 -2.39 -0.02 2.30 16 35 H 0.00 0.17 6.78 -2.39 -0.02 0.15 16 36 H 0.01 0.26 8.14 -2.39 -0.02 0.24 16 37 H 0.09 1.47 8.12 -2.38 -0.02 1.45 16 38 H 0.08 1.46 8.09 -2.38 -0.02 1.44 16 39 H 0.06 1.65 6.60 -2.38 -0.02 1.63 16 40 H 0.09 1.79 8.12 -2.39 -0.02 1.77 16 41 H 0.01 0.16 8.11 -2.39 -0.02 0.14 16 Total: -1.00 -70.77 319.37 2.03 -68.74 By element: Atomic # 1 Polarization: 8.52 SS G_CDS: 0.99 Total: 9.51 kcal Atomic # 6 Polarization: -2.99 SS G_CDS: 5.77 Total: 2.78 kcal Atomic # 7 Polarization: -88.76 SS G_CDS: -6.72 Total: -95.47 kcal Atomic # 8 Polarization: -33.36 SS G_CDS: -0.04 Total: -33.40 kcal Atomic # 14 Polarization: 45.81 SS G_CDS: 2.03 Total: 47.84 kcal Total: -70.77 2.03 -68.74 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597092670.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.751 kcal (2) G-P(sol) polarization free energy of solvation -70.770 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.019 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.027 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.743 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.992 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds