Wall clock time and date at job start Mon Mar 30 2020 03:53:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 H 1.08998 * 109.47595 * 2 1 4 4 C 1.50700 * 109.47075 * 119.99818 * 2 1 3 5 5 H 1.08002 * 120.00568 * 114.50067 * 4 2 1 6 6 C 1.37881 * 120.00095 * 294.50040 * 4 2 1 7 7 N 1.31514 * 120.00178 * 164.05827 * 6 4 2 8 8 Si 1.86803 * 119.99694 * 344.06840 * 6 4 2 9 9 H 1.48503 * 109.47012 * 179.97438 * 8 6 4 10 10 H 1.48503 * 109.46958 * 299.99287 * 8 6 4 11 11 H 1.48493 * 109.47556 * 59.99509 * 8 6 4 12 12 C 1.50701 * 109.47307 * 239.99571 * 2 1 3 13 13 O 1.21280 * 119.99961 * 250.85137 * 12 2 1 14 14 N 1.34769 * 120.00133 * 70.84827 * 12 2 1 15 15 C 1.47076 * 120.88351 * 183.42652 * 14 12 2 16 16 C 1.53241 * 108.52415 * 231.18721 * 15 14 12 17 17 H 1.09002 * 109.49372 * 66.12319 * 16 15 14 18 18 C 1.52992 * 109.49886 * 186.21038 * 16 15 14 19 19 N 1.46905 * 109.33807 * 306.17402 * 16 15 14 20 20 C 1.46900 * 110.99809 * 187.25270 * 19 16 15 21 21 C 1.46893 * 111.27447 * 63.09818 * 19 16 15 22 22 H 1.09004 * 109.49038 * 56.88214 * 21 19 16 23 23 C 1.52997 * 109.49609 * 176.93777 * 21 19 16 24 24 C 1.47087 * 120.88025 * 3.14696 * 14 12 2 25 25 H 1.09001 * 109.47333 * 53.24872 * 1 2 3 26 26 H 1.08998 * 109.47618 * 173.25061 * 1 2 3 27 27 H 1.09004 * 109.47360 * 293.25610 * 1 2 3 28 28 H 0.96993 * 120.00139 * 354.76187 * 7 6 4 29 29 H 1.08997 * 109.63158 * 350.89474 * 15 14 12 30 30 H 1.09002 * 109.62982 * 111.28674 * 15 14 12 31 31 H 1.09008 * 109.47220 * 59.99690 * 18 16 15 32 32 H 1.08997 * 109.47632 * 179.97438 * 18 16 15 33 33 H 1.09006 * 109.47111 * 300.00106 * 18 16 15 34 34 H 1.09003 * 109.47591 * 59.99568 * 20 19 16 35 35 H 1.08998 * 109.47058 * 179.97438 * 20 19 16 36 36 H 1.08996 * 109.47050 * 299.99585 * 20 19 16 37 37 H 1.08998 * 109.47187 * 59.99648 * 23 21 19 38 38 H 1.09003 * 109.47440 * 180.02562 * 23 21 19 39 39 H 1.09003 * 109.46677 * 300.00229 * 23 21 19 40 40 H 1.09001 * 109.62878 * 248.52194 * 24 14 12 41 41 H 1.09002 * 109.62382 * 9.10421 * 24 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0322 -0.7104 1.2305 5 1 2.5779 -1.6374 1.1340 6 6 1.7952 -0.1769 2.4796 7 7 1.9440 -0.9229 3.5524 8 14 1.2624 1.6056 2.6481 9 1 1.0732 1.9321 4.0844 10 1 2.3064 2.4909 2.0722 11 1 -0.0164 1.8109 1.9217 12 6 2.0323 -0.7105 -1.2304 13 8 2.5593 -1.7982 -1.1299 14 7 1.8959 -0.1373 -2.4425 15 6 2.3110 -0.8448 -3.6632 16 6 3.2238 0.0800 -4.4754 17 1 4.1488 0.2529 -3.9253 18 6 3.5442 -0.5724 -5.8217 19 7 2.5414 1.3611 -4.7015 20 6 3.3098 2.2119 -5.6201 21 6 2.2796 2.0565 -3.4344 22 1 3.2178 2.2022 -2.8989 23 6 1.6388 3.4159 -3.7209 24 6 1.3225 1.2102 -2.5801 25 1 -0.3634 0.6149 -0.8234 26 1 -0.3634 -1.0205 -0.1208 27 1 -0.3634 0.4058 0.9442 28 1 2.1461 -1.8673 3.4621 29 1 2.8537 -1.7511 -3.3946 30 1 1.4317 -1.1055 -4.2522 31 1 2.6188 -0.7439 -6.3717 32 1 4.1931 0.0858 -6.3993 33 1 4.0485 -1.5241 -5.6534 34 1 3.4240 1.7030 -6.5772 35 1 2.7819 3.1536 -5.7704 36 1 4.2934 2.4103 -5.1945 37 1 0.7003 3.2698 -4.2555 38 1 1.4452 3.9318 -2.7804 39 1 2.3150 4.0149 -4.3309 40 1 0.3502 1.1462 -3.0686 41 1 1.2113 1.6631 -1.5948 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597696967.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:53:23 Heat of formation + Delta-G solvation = -26.823818 kcal Electronic energy + Delta-G solvation = -20306.441557 eV Core-core repulsion = 17414.519512 eV Total energy + Delta-G solvation = -2891.922045 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 254.174 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.04733 -38.06884 -34.42973 -34.04132 -33.44087 -31.10284 -29.35484 -27.15502 -26.80116 -24.91402 -24.25475 -21.94884 -21.23985 -19.88271 -18.40818 -17.33885 -16.34266 -16.24071 -15.56704 -15.12645 -14.58013 -14.28401 -14.08001 -13.57099 -13.13830 -13.05414 -12.93745 -12.62692 -12.29340 -12.14670 -11.86159 -11.70352 -11.64869 -11.61559 -11.41438 -11.07372 -10.94871 -10.77576 -10.76543 -10.49401 -10.13877 -9.75071 -8.80092 -8.68312 -8.52945 -8.25852 -8.06252 -6.42657 -4.02084 3.33219 3.38934 3.46200 3.53302 3.59600 3.81024 4.50143 4.75068 4.78144 4.92165 5.10842 5.20399 5.26516 5.27286 5.32691 5.39669 5.49258 5.57105 5.59036 5.62764 5.75305 5.80698 5.87009 5.93800 6.00239 6.05019 6.08096 6.21093 6.25802 6.44411 6.54076 6.81308 6.93608 7.00969 7.06035 7.25195 7.79253 8.19107 8.49464 9.04566 9.10003 9.66197 10.97592 Molecular weight = 254.17amu Principal moments of inertia in cm(-1) A = 0.027943 B = 0.006711 C = 0.005815 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1001.786126 B = 4171.396466 C = 4813.860880 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.004 3.996 3 H 0.040 0.960 4 C -0.587 4.587 5 H 0.074 0.926 6 C 0.031 3.969 7 N -0.905 5.905 8 Si 1.037 2.963 9 H -0.284 1.284 10 H -0.284 1.284 11 H -0.272 1.272 12 C 0.531 3.469 13 O -0.537 6.537 14 N -0.631 5.631 15 C 0.121 3.879 16 C 0.067 3.933 17 H 0.044 0.956 18 C -0.144 4.144 19 N -0.533 5.533 20 C 0.017 3.983 21 C 0.063 3.937 22 H 0.046 0.954 23 C -0.147 4.147 24 C 0.120 3.880 25 H 0.030 0.970 26 H 0.047 0.953 27 H 0.065 0.935 28 H 0.270 0.730 29 H 0.091 0.909 30 H 0.066 0.934 31 H 0.065 0.935 32 H 0.058 0.942 33 H 0.062 0.938 34 H 0.070 0.930 35 H 0.072 0.928 36 H 0.022 0.978 37 H 0.066 0.934 38 H 0.065 0.935 39 H 0.059 0.941 40 H 0.070 0.930 41 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.752 8.967 -18.685 20.739 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.018 4.018 3 H 0.058 0.942 4 C -0.625 4.625 5 H 0.092 0.908 6 C -0.174 4.174 7 N -0.539 5.539 8 Si 0.865 3.135 9 H -0.210 1.210 10 H -0.210 1.210 11 H -0.198 1.198 12 C 0.321 3.679 13 O -0.412 6.412 14 N -0.366 5.366 15 C -0.002 4.002 16 C -0.042 4.042 17 H 0.062 0.938 18 C -0.202 4.202 19 N -0.258 5.258 20 C -0.131 4.131 21 C -0.046 4.046 22 H 0.064 0.936 23 C -0.204 4.204 24 C -0.004 4.004 25 H 0.049 0.951 26 H 0.067 0.933 27 H 0.084 0.916 28 H 0.080 0.920 29 H 0.109 0.891 30 H 0.084 0.916 31 H 0.084 0.916 32 H 0.077 0.923 33 H 0.081 0.919 34 H 0.089 0.911 35 H 0.091 0.909 36 H 0.041 0.959 37 H 0.085 0.915 38 H 0.084 0.916 39 H 0.078 0.922 40 H 0.089 0.911 41 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -1.252 9.408 -17.669 20.057 hybrid contribution 1.200 -0.955 -0.847 1.752 sum -0.052 8.453 -18.517 20.355 Atomic orbital electron populations 1.22243 0.96810 1.00754 1.00665 1.19173 0.93709 0.96609 0.92269 0.94243 1.21981 1.39577 1.11336 0.89602 0.90790 1.25734 0.94454 1.05285 0.91912 1.70800 1.44265 1.08192 1.30652 0.84203 0.77020 0.75910 0.76357 1.20958 1.21024 1.19818 1.21503 0.76759 0.85888 0.83707 1.90542 1.42973 1.21957 1.85717 1.48416 1.64597 1.17306 1.06306 1.21563 0.98013 0.95344 0.85284 1.22023 0.95633 0.90084 0.96431 0.93802 1.21858 1.01978 1.00440 0.95951 1.62019 1.47151 1.03917 1.12756 1.22505 0.95821 0.97828 0.96906 1.22158 0.98488 0.93974 0.89958 0.93565 1.21889 1.01361 0.95004 1.02189 1.21957 0.95791 0.82267 1.00347 0.95123 0.93343 0.91618 0.92019 0.89113 0.91621 0.91589 0.92303 0.91878 0.91086 0.90917 0.95947 0.91499 0.91618 0.92218 0.91141 0.88692 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.15 8.57 37.15 0.32 -2.83 16 2 C 0.00 0.10 1.36 -92.93 -0.13 -0.03 16 3 H 0.04 0.91 5.61 -51.93 -0.29 0.62 16 4 C -0.59 -17.24 8.65 -34.44 -0.30 -17.54 16 5 H 0.07 2.47 7.04 -52.49 -0.37 2.10 16 6 C 0.03 0.90 5.31 -17.82 -0.09 0.81 16 7 N -0.91 -28.31 13.70 55.43 0.76 -27.56 16 8 Si 1.04 24.46 26.25 -169.99 -4.46 20.00 16 9 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 10 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 11 H -0.27 -5.71 5.67 56.52 0.32 -5.39 16 12 C 0.53 12.37 6.95 -10.99 -0.08 12.30 16 13 O -0.54 -14.57 14.97 5.56 0.08 -14.49 16 14 N -0.63 -11.53 3.00 -172.18 -0.52 -12.04 16 15 C 0.12 1.91 5.89 -3.60 -0.02 1.89 16 16 C 0.07 0.88 2.60 -67.59 -0.18 0.71 16 17 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 18 C -0.14 -1.46 8.72 37.15 0.32 -1.14 16 19 N -0.53 -6.44 4.57 -226.33 -1.04 -7.48 16 20 C 0.02 0.17 8.56 60.06 0.51 0.68 16 21 C 0.06 0.81 2.62 -67.36 -0.18 0.63 16 22 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 23 C -0.15 -1.43 8.73 37.16 0.32 -1.10 16 24 C 0.12 1.79 4.67 -3.36 -0.02 1.77 16 25 H 0.03 0.53 6.39 -51.93 -0.33 0.20 16 26 H 0.05 1.07 8.14 -51.93 -0.42 0.65 16 27 H 0.07 1.44 4.71 -51.93 -0.24 1.20 16 28 H 0.27 8.53 8.73 -40.82 -0.36 8.17 16 29 H 0.09 1.58 7.05 -51.93 -0.37 1.21 16 30 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 31 H 0.07 0.64 8.14 -51.92 -0.42 0.22 16 32 H 0.06 0.52 6.33 -51.93 -0.33 0.19 16 33 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 34 H 0.07 0.60 6.21 -51.93 -0.32 0.28 16 35 H 0.07 0.61 5.95 -51.93 -0.31 0.30 16 36 H 0.02 0.22 8.14 -51.93 -0.42 -0.20 16 37 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 38 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 39 H 0.06 0.51 6.23 -51.93 -0.32 0.19 16 40 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 41 H 0.09 1.46 5.12 -51.93 -0.27 1.19 16 LS Contribution 305.79 15.07 4.61 4.61 Total: -1.00 -33.37 305.79 -6.68 -40.05 By element: Atomic # 1 Polarization: 7.36 SS G_CDS: -6.61 Total: 0.75 kcal Atomic # 6 Polarization: -4.33 SS G_CDS: 0.50 Total: -3.84 kcal Atomic # 7 Polarization: -46.28 SS G_CDS: -0.79 Total: -47.08 kcal Atomic # 8 Polarization: -14.57 SS G_CDS: 0.08 Total: -14.49 kcal Atomic # 14 Polarization: 24.46 SS G_CDS: -4.46 Total: 20.00 kcal Total LS contribution 4.61 Total: 4.61 kcal Total: -33.37 -6.68 -40.05 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597696967.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.229 kcal (2) G-P(sol) polarization free energy of solvation -33.372 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.143 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.681 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.053 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.824 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds