Wall clock time and date at job start Mon Mar 30 2020 03:53:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 H 1.08998 * 109.47595 * 2 1 4 4 C 1.50700 * 109.47075 * 119.99818 * 2 1 3 5 5 H 1.08002 * 120.00568 * 114.50067 * 4 2 1 6 6 C 1.37881 * 120.00095 * 294.50040 * 4 2 1 7 7 N 1.31514 * 120.00178 * 164.05827 * 6 4 2 8 8 Si 1.86803 * 119.99694 * 344.06840 * 6 4 2 9 9 H 1.48503 * 109.47012 * 179.97438 * 8 6 4 10 10 H 1.48503 * 109.46958 * 299.99287 * 8 6 4 11 11 H 1.48493 * 109.47556 * 59.99509 * 8 6 4 12 12 C 1.50701 * 109.47307 * 239.99571 * 2 1 3 13 13 O 1.21280 * 119.99961 * 250.85137 * 12 2 1 14 14 N 1.34769 * 120.00133 * 70.84827 * 12 2 1 15 15 C 1.47076 * 120.88351 * 183.42652 * 14 12 2 16 16 C 1.53241 * 108.52415 * 231.18721 * 15 14 12 17 17 H 1.09002 * 109.49372 * 66.12319 * 16 15 14 18 18 C 1.52992 * 109.49886 * 186.21038 * 16 15 14 19 19 N 1.46905 * 109.33807 * 306.17402 * 16 15 14 20 20 C 1.46900 * 110.99809 * 187.25270 * 19 16 15 21 21 C 1.46893 * 111.27447 * 63.09818 * 19 16 15 22 22 H 1.09004 * 109.49038 * 56.88214 * 21 19 16 23 23 C 1.52997 * 109.49609 * 176.93777 * 21 19 16 24 24 C 1.47087 * 120.88025 * 3.14696 * 14 12 2 25 25 H 1.09001 * 109.47333 * 53.24872 * 1 2 3 26 26 H 1.08998 * 109.47618 * 173.25061 * 1 2 3 27 27 H 1.09004 * 109.47360 * 293.25610 * 1 2 3 28 28 H 0.96993 * 120.00139 * 354.76187 * 7 6 4 29 29 H 1.08997 * 109.63158 * 350.89474 * 15 14 12 30 30 H 1.09002 * 109.62982 * 111.28674 * 15 14 12 31 31 H 1.09008 * 109.47220 * 59.99690 * 18 16 15 32 32 H 1.08997 * 109.47632 * 179.97438 * 18 16 15 33 33 H 1.09006 * 109.47111 * 300.00106 * 18 16 15 34 34 H 1.09003 * 109.47591 * 59.99568 * 20 19 16 35 35 H 1.08998 * 109.47058 * 179.97438 * 20 19 16 36 36 H 1.08996 * 109.47050 * 299.99585 * 20 19 16 37 37 H 1.08998 * 109.47187 * 59.99648 * 23 21 19 38 38 H 1.09003 * 109.47440 * 180.02562 * 23 21 19 39 39 H 1.09003 * 109.46677 * 300.00229 * 23 21 19 40 40 H 1.09001 * 109.62878 * 248.52194 * 24 14 12 41 41 H 1.09002 * 109.62382 * 9.10421 * 24 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0322 -0.7104 1.2305 5 1 2.5779 -1.6374 1.1340 6 6 1.7952 -0.1769 2.4796 7 7 1.9440 -0.9229 3.5524 8 14 1.2624 1.6056 2.6481 9 1 1.0732 1.9321 4.0844 10 1 2.3064 2.4909 2.0722 11 1 -0.0164 1.8109 1.9217 12 6 2.0323 -0.7105 -1.2304 13 8 2.5593 -1.7982 -1.1299 14 7 1.8959 -0.1373 -2.4425 15 6 2.3110 -0.8448 -3.6632 16 6 3.2238 0.0800 -4.4754 17 1 4.1488 0.2529 -3.9253 18 6 3.5442 -0.5724 -5.8217 19 7 2.5414 1.3611 -4.7015 20 6 3.3098 2.2119 -5.6201 21 6 2.2796 2.0565 -3.4344 22 1 3.2178 2.2022 -2.8989 23 6 1.6388 3.4159 -3.7209 24 6 1.3225 1.2102 -2.5801 25 1 -0.3634 0.6149 -0.8234 26 1 -0.3634 -1.0205 -0.1208 27 1 -0.3634 0.4058 0.9442 28 1 2.1461 -1.8673 3.4621 29 1 2.8537 -1.7511 -3.3946 30 1 1.4317 -1.1055 -4.2522 31 1 2.6188 -0.7439 -6.3717 32 1 4.1931 0.0858 -6.3993 33 1 4.0485 -1.5241 -5.6534 34 1 3.4240 1.7030 -6.5772 35 1 2.7819 3.1536 -5.7704 36 1 4.2934 2.4103 -5.1945 37 1 0.7003 3.2698 -4.2555 38 1 1.4452 3.9318 -2.7804 39 1 2.3150 4.0149 -4.3309 40 1 0.3502 1.1462 -3.0686 41 1 1.2113 1.6631 -1.5948 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597696967.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:53:22 Heat of formation + Delta-G solvation = -52.146902 kcal Electronic energy + Delta-G solvation = -20307.539649 eV Core-core repulsion = 17414.519512 eV Total energy + Delta-G solvation = -2893.020136 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 254.174 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.44323 -39.52132 -36.07695 -35.69023 -34.69880 -33.11892 -30.35286 -28.16763 -27.89279 -26.87781 -25.63442 -23.58976 -22.28150 -21.06623 -20.08890 -19.39095 -18.04117 -17.38027 -16.85910 -16.37231 -16.01693 -15.76464 -15.34836 -15.09371 -14.62645 -14.35850 -14.27098 -13.82375 -13.73902 -13.39238 -13.19446 -13.08437 -12.97721 -12.72257 -12.57644 -12.43336 -12.36440 -11.99057 -11.96013 -11.92719 -11.68342 -11.54100 -10.96912 -10.60561 -10.40297 -9.76199 -9.28794 -8.79373 -6.39880 1.46150 1.56218 1.72528 1.77205 2.04090 2.53740 2.82538 3.04334 3.64735 3.74724 3.89088 4.02907 4.13984 4.18673 4.27656 4.37384 4.49092 4.54756 4.59941 4.63465 4.65989 4.72471 4.79345 4.81228 4.84054 4.92456 5.01449 5.02486 5.05932 5.16988 5.24961 5.39493 5.46567 5.54054 5.81613 6.01860 6.02838 6.09025 6.48352 6.57001 7.31747 7.41832 8.59677 Molecular weight = 254.17amu Principal moments of inertia in cm(-1) A = 0.027943 B = 0.006711 C = 0.005815 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1001.786126 B = 4171.396466 C = 4813.860880 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.002 3.998 3 H 0.064 0.936 4 C -0.601 4.601 5 H 0.011 0.989 6 C -0.022 4.022 7 N -0.937 5.937 8 Si 1.081 2.919 9 H -0.290 1.290 10 H -0.259 1.259 11 H -0.220 1.220 12 C 0.523 3.477 13 O -0.595 6.595 14 N -0.621 5.621 15 C 0.118 3.882 16 C 0.073 3.927 17 H 0.019 0.981 18 C -0.137 4.137 19 N -0.531 5.531 20 C 0.016 3.984 21 C 0.064 3.936 22 H 0.025 0.975 23 C -0.139 4.139 24 C 0.109 3.891 25 H 0.079 0.921 26 H 0.029 0.971 27 H 0.064 0.936 28 H 0.247 0.753 29 H 0.064 0.936 30 H 0.084 0.916 31 H 0.076 0.924 32 H 0.076 0.924 33 H 0.061 0.939 34 H 0.085 0.915 35 H 0.091 0.909 36 H 0.017 0.983 37 H 0.077 0.923 38 H 0.073 0.927 39 H 0.073 0.927 40 H 0.094 0.906 41 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.438 12.788 -21.574 25.198 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.019 4.019 3 H 0.081 0.919 4 C -0.639 4.639 5 H 0.029 0.971 6 C -0.219 4.219 7 N -0.572 5.572 8 Si 0.899 3.101 9 H -0.216 1.216 10 H -0.183 1.183 11 H -0.144 1.144 12 C 0.314 3.686 13 O -0.475 6.475 14 N -0.354 5.354 15 C -0.005 4.005 16 C -0.036 4.036 17 H 0.037 0.963 18 C -0.195 4.195 19 N -0.257 5.257 20 C -0.131 4.131 21 C -0.045 4.045 22 H 0.043 0.957 23 C -0.197 4.197 24 C -0.013 4.013 25 H 0.098 0.902 26 H 0.049 0.951 27 H 0.083 0.917 28 H 0.056 0.944 29 H 0.082 0.918 30 H 0.102 0.898 31 H 0.094 0.906 32 H 0.095 0.905 33 H 0.080 0.920 34 H 0.104 0.896 35 H 0.109 0.891 36 H 0.035 0.965 37 H 0.096 0.904 38 H 0.092 0.908 39 H 0.092 0.908 40 H 0.112 0.888 41 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -2.949 13.255 -20.644 24.709 hybrid contribution 1.793 -2.230 -0.026 2.861 sum -1.156 11.025 -20.669 23.454 Atomic orbital electron populations 1.22115 0.94134 1.00791 1.02576 1.19117 0.95658 0.96817 0.90357 0.91885 1.22062 1.39368 1.09630 0.92857 0.97108 1.27572 0.93454 1.09765 0.91078 1.70959 1.47061 1.07229 1.31973 0.83750 0.79721 0.69667 0.76983 1.21601 1.18335 1.14356 1.21419 0.76623 0.85302 0.85303 1.90520 1.45754 1.24411 1.86765 1.48387 1.63103 1.18533 1.05384 1.21741 0.99069 0.95086 0.84630 1.21920 0.93756 0.90695 0.97256 0.96295 1.21816 1.02846 1.00520 0.94272 1.62066 1.47299 1.03698 1.12629 1.22615 0.95468 0.98336 0.96658 1.22158 0.97296 0.95271 0.89804 0.95661 1.21861 1.01791 0.92910 1.03118 1.22326 0.97338 0.80314 1.01287 0.90237 0.95140 0.91687 0.94409 0.91794 0.89759 0.90551 0.90502 0.91977 0.89632 0.89066 0.96451 0.90448 0.90775 0.90813 0.88751 0.88719 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.61 8.57 71.98 0.62 -4.99 16 2 C 0.00 0.11 1.36 -12.29 -0.02 0.09 16 3 H 0.06 2.74 5.61 -2.39 -0.01 2.73 16 4 C -0.60 -36.88 8.65 25.60 0.22 -36.66 16 5 H 0.01 0.77 7.04 -2.91 -0.02 0.75 16 6 C -0.02 -1.32 5.31 84.66 0.45 -0.87 16 7 N -0.94 -61.26 13.70 21.45 0.29 -60.97 16 8 Si 1.08 47.50 26.25 68.60 1.80 49.31 16 9 H -0.29 -13.05 7.11 99.48 0.71 -12.34 16 10 H -0.26 -10.31 7.11 99.48 0.71 -9.60 16 11 H -0.22 -7.89 5.67 99.48 0.56 -7.33 16 12 C 0.52 24.91 6.95 87.66 0.61 25.52 16 13 O -0.59 -34.39 14.97 -3.03 -0.05 -34.44 16 14 N -0.62 -22.15 3.00 -817.05 -2.45 -24.61 16 15 C 0.12 3.65 5.89 86.35 0.51 4.16 16 16 C 0.07 1.81 2.60 44.99 0.12 1.93 16 17 H 0.02 0.56 8.14 -2.39 -0.02 0.55 16 18 C -0.14 -2.45 8.72 71.98 0.63 -1.82 16 19 N -0.53 -11.12 4.57 -869.97 -3.98 -15.10 16 20 C 0.02 0.25 8.56 127.69 1.09 1.35 16 21 C 0.06 1.43 2.62 45.15 0.12 1.54 16 22 H 0.03 0.68 8.14 -2.38 -0.02 0.66 16 23 C -0.14 -2.05 8.73 71.98 0.63 -1.42 16 24 C 0.11 2.89 4.67 86.50 0.40 3.30 16 25 H 0.08 2.43 6.39 -2.39 -0.02 2.41 16 26 H 0.03 1.31 8.14 -2.39 -0.02 1.29 16 27 H 0.06 2.63 4.71 -2.39 -0.01 2.62 16 28 H 0.25 16.81 8.73 -92.71 -0.81 16.00 16 29 H 0.06 2.33 7.05 -2.39 -0.02 2.31 16 30 H 0.08 2.31 8.14 -2.39 -0.02 2.29 16 31 H 0.08 1.24 8.14 -2.38 -0.02 1.22 16 32 H 0.08 1.12 6.33 -2.39 -0.02 1.10 16 33 H 0.06 1.13 8.14 -2.38 -0.02 1.11 16 34 H 0.09 1.09 6.21 -2.39 -0.01 1.07 16 35 H 0.09 1.10 5.95 -2.39 -0.01 1.08 16 36 H 0.02 0.29 8.14 -2.39 -0.02 0.27 16 37 H 0.08 1.02 8.14 -2.39 -0.02 1.00 16 38 H 0.07 1.00 8.14 -2.39 -0.02 0.98 16 39 H 0.07 0.90 6.23 -2.39 -0.01 0.89 16 40 H 0.09 2.11 8.14 -2.39 -0.02 2.09 16 41 H 0.09 2.52 5.12 -2.39 -0.01 2.50 16 Total: -1.00 -79.86 305.79 1.82 -78.04 By element: Atomic # 1 Polarization: 14.83 SS G_CDS: 0.83 Total: 15.66 kcal Atomic # 6 Polarization: -13.26 SS G_CDS: 5.38 Total: -7.88 kcal Atomic # 7 Polarization: -94.54 SS G_CDS: -6.14 Total: -100.68 kcal Atomic # 8 Polarization: -34.39 SS G_CDS: -0.05 Total: -34.44 kcal Atomic # 14 Polarization: 47.50 SS G_CDS: 1.80 Total: 49.31 kcal Total: -79.86 1.82 -78.04 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597696967.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.888 kcal (2) G-P(sol) polarization free energy of solvation -79.856 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.967 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.820 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.035 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.147 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds