Wall clock time and date at job start Mon Mar 30 2020 04:44:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09003 * 109.46744 * 2 1 4 4 C 1.50700 * 109.47047 * 119.99711 * 2 1 3 5 5 H 1.07999 * 119.99582 * 119.99997 * 4 2 1 6 6 C 1.37883 * 120.00060 * 300.00353 * 4 2 1 7 7 N 1.31513 * 119.99851 * 359.97438 * 6 4 2 8 8 Si 1.86798 * 119.99656 * 179.97438 * 6 4 2 9 9 H 1.48490 * 109.47224 * 269.99581 * 8 6 4 10 10 H 1.48497 * 109.47108 * 30.00365 * 8 6 4 11 11 H 1.48507 * 109.46783 * 150.00221 * 8 6 4 12 12 N 1.46498 * 109.47376 * 240.00443 * 2 1 3 13 13 C 1.46506 * 119.99378 * 299.99821 * 12 2 1 14 14 C 1.34769 * 120.00458 * 120.00127 * 12 2 1 15 15 O 1.21287 * 119.99805 * 359.97438 * 14 12 2 16 16 C 1.50696 * 120.00201 * 179.97438 * 14 12 2 17 17 C 1.53000 * 109.47463 * 175.57322 * 16 14 12 18 18 H 1.09004 * 109.47025 * 306.06960 * 17 16 14 19 19 C 1.53001 * 109.47268 * 186.07180 * 17 16 14 20 20 N 1.46892 * 109.47552 * 65.53516 * 19 17 16 21 21 C 1.52998 * 109.46811 * 66.07075 * 17 16 14 22 22 C 1.53011 * 117.49503 * 248.74696 * 21 17 16 23 23 C 1.53004 * 117.49894 * 180.09020 * 21 17 16 24 24 H 1.08997 * 109.47523 * 300.00202 * 1 2 3 25 25 H 1.09004 * 109.46846 * 59.99796 * 1 2 3 26 26 H 1.08999 * 109.47152 * 179.97438 * 1 2 3 27 27 H 0.97002 * 119.99674 * 179.97438 * 7 6 4 28 28 H 1.08997 * 109.47149 * 90.00312 * 13 12 2 29 29 H 1.09000 * 109.46468 * 210.00328 * 13 12 2 30 30 H 1.08997 * 109.47033 * 329.99938 * 13 12 2 31 31 H 1.08994 * 109.47216 * 295.57675 * 16 14 12 32 32 H 1.09009 * 109.47086 * 55.57248 * 16 14 12 33 33 H 1.08997 * 109.46948 * 185.54031 * 19 17 16 34 34 H 1.08999 * 109.46918 * 305.53354 * 19 17 16 35 35 H 1.00895 * 111.00378 * 174.68809 * 20 19 17 36 36 H 1.00899 * 111.00171 * 298.64965 * 20 19 17 37 37 H 1.08999 * 115.55625 * 34.41520 * 21 17 16 38 38 H 1.09000 * 117.49800 * 0.02562 * 22 21 17 39 39 H 1.09000 * 117.49575 * 145.02124 * 22 21 17 40 40 H 1.08994 * 117.49880 * 214.97669 * 23 21 17 41 41 H 1.09000 * 117.49546 * 0.02562 * 23 21 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 1.2305 5 1 2.6532 -1.5884 1.1314 6 6 1.6992 -0.2393 2.4828 7 7 0.9435 0.8303 2.6034 8 14 2.3213 -1.1203 4.0080 9 1 1.3427 -2.1615 4.4119 10 1 3.6293 -1.7581 3.7122 11 1 2.4864 -0.1412 5.1123 12 7 2.0184 -0.6905 -1.1962 13 6 1.6645 -2.0931 -1.4280 14 6 2.7933 -0.0355 -2.0833 15 8 3.0859 1.1258 -1.8915 16 6 3.2961 -0.7461 -3.3134 17 6 4.0531 0.2441 -4.2007 18 1 3.4182 1.1057 -4.4075 19 6 4.4324 -0.4373 -5.5171 20 7 3.2133 -0.7626 -6.2692 21 6 5.3220 0.7064 -3.4816 22 6 5.3785 2.1623 -3.0144 23 6 6.2211 1.7081 -4.2090 24 1 -0.3634 0.5138 0.8899 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 -1.0276 -0.0005 27 1 0.7088 1.1614 3.4844 28 1 0.7377 -2.1443 -1.9994 29 1 2.4630 -2.5817 -1.9863 30 1 1.5296 -2.5968 -0.4708 31 1 3.9650 -1.5543 -3.0182 32 1 2.4514 -1.1572 -3.8664 33 1 5.0554 0.2344 -6.1076 34 1 4.9844 -1.3533 -5.3061 35 1 3.4385 -1.1345 -7.1797 36 1 2.6289 -1.4020 -5.7518 37 1 5.8066 -0.0424 -2.8550 38 1 4.5116 2.7906 -3.2191 39 1 5.9008 2.3713 -2.0808 40 1 7.2972 1.6185 -4.0607 41 1 5.9085 2.0381 -5.1997 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000690542865.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:44:05 Heat of formation + Delta-G solvation = -39.463657 kcal Electronic energy + Delta-G solvation = -19769.327471 eV Core-core repulsion = 16876.857321 eV Total energy + Delta-G solvation = -2892.470150 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 254.174 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.89180 -38.86148 -36.90669 -35.72907 -34.73746 -32.37925 -30.94605 -27.57087 -27.33868 -27.10137 -23.77055 -22.86263 -22.74971 -20.78471 -19.75148 -18.51178 -17.82946 -17.33295 -16.76982 -16.54123 -15.94451 -15.83147 -15.62957 -14.76227 -14.43540 -14.38494 -14.11610 -13.86226 -13.51197 -13.19460 -13.07567 -12.91912 -12.71118 -12.63104 -12.42750 -12.36266 -12.19278 -12.12997 -12.05938 -11.69443 -11.16324 -10.99699 -10.84174 -10.55039 -10.22643 -9.50639 -9.20678 -8.13440 -6.30015 1.40154 1.41844 1.51598 1.98574 2.36072 2.58330 3.01088 3.14065 3.59132 3.81544 3.90830 4.01591 4.19494 4.23864 4.37706 4.51718 4.58260 4.68558 4.71324 4.77086 4.80295 4.83174 4.87309 4.90789 5.04767 5.06903 5.13091 5.17845 5.26872 5.35105 5.49893 5.53461 5.65555 5.71572 6.09083 6.19500 6.32659 6.69960 6.79190 6.96990 7.36582 7.63478 8.90624 Molecular weight = 254.17amu Principal moments of inertia in cm(-1) A = 0.026283 B = 0.005597 C = 0.005134 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1065.081728 B = 5001.367239 C = 5452.568089 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C 0.263 3.737 3 H 0.006 0.994 4 C -0.535 4.535 5 H 0.060 0.940 6 C 0.013 3.987 7 N -0.919 5.919 8 Si 0.964 3.036 9 H -0.267 1.267 10 H -0.271 1.271 11 H -0.287 1.287 12 N -0.608 5.608 13 C 0.081 3.919 14 C 0.488 3.512 15 O -0.585 6.585 16 C -0.119 4.119 17 C -0.032 4.032 18 H 0.054 0.946 19 C 0.079 3.921 20 N -0.862 5.862 21 C -0.142 4.142 22 C -0.171 4.171 23 C -0.161 4.161 24 H 0.064 0.936 25 H 0.017 0.983 26 H 0.045 0.955 27 H 0.263 0.737 28 H 0.062 0.938 29 H 0.090 0.910 30 H 0.064 0.936 31 H 0.106 0.894 32 H 0.110 0.890 33 H 0.078 0.922 34 H 0.044 0.956 35 H 0.353 0.647 36 H 0.345 0.655 37 H 0.093 0.907 38 H 0.071 0.929 39 H 0.070 0.930 40 H 0.105 0.895 41 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.310 -7.996 -15.544 18.584 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.160 3.840 3 H 0.024 0.976 4 C -0.574 4.574 5 H 0.078 0.922 6 C -0.186 4.186 7 N -0.558 5.558 8 Si 0.790 3.210 9 H -0.192 1.192 10 H -0.196 1.196 11 H -0.212 1.212 12 N -0.339 5.339 13 C -0.061 4.061 14 C 0.277 3.723 15 O -0.466 6.466 16 C -0.159 4.159 17 C -0.052 4.052 18 H 0.072 0.928 19 C -0.052 4.052 20 N -0.395 5.395 21 C -0.160 4.160 22 C -0.209 4.209 23 C -0.198 4.198 24 H 0.083 0.917 25 H 0.036 0.964 26 H 0.064 0.936 27 H 0.072 0.928 28 H 0.081 0.919 29 H 0.108 0.892 30 H 0.083 0.917 31 H 0.125 0.875 32 H 0.128 0.872 33 H 0.097 0.903 34 H 0.062 0.938 35 H 0.167 0.833 36 H 0.158 0.842 37 H 0.111 0.889 38 H 0.089 0.911 39 H 0.089 0.911 40 H 0.124 0.876 41 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 6.203 -6.523 -15.256 17.714 hybrid contribution 0.279 -0.825 1.495 1.731 sum 6.482 -7.349 -13.761 16.893 Atomic orbital electron populations 1.21855 0.97569 0.99859 0.99632 1.18436 0.91291 0.92187 0.82043 0.97559 1.21590 1.31649 1.12908 0.91242 0.92207 1.25751 0.95160 0.95644 1.02063 1.70036 1.37512 1.23955 1.24303 0.85463 0.78834 0.78247 0.78501 1.19232 1.19556 1.21248 1.48252 1.49722 1.13278 1.22654 1.21797 1.01099 0.80896 1.02320 1.21435 0.78234 0.87177 0.85421 1.90639 1.58978 1.19130 1.77811 1.21745 1.01929 0.99232 0.92972 1.20435 0.93901 0.97328 0.93522 0.92786 1.21669 0.91625 0.99128 0.92790 1.58653 1.19367 1.53601 1.07839 1.22131 0.98201 0.92805 1.02900 1.22611 1.01724 0.98420 0.98110 1.23078 0.97618 1.02621 0.96435 0.91680 0.96434 0.93637 0.92750 0.91936 0.89190 0.91747 0.87541 0.87218 0.90327 0.93801 0.83336 0.84151 0.88921 0.91064 0.91116 0.87644 0.87956 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.48 8.97 71.98 0.65 -5.84 16 2 C 0.26 13.95 2.64 44.25 0.12 14.07 16 3 H 0.01 0.41 6.90 -2.39 -0.02 0.39 16 4 C -0.54 -29.50 7.99 25.60 0.20 -29.30 16 5 H 0.06 3.19 7.33 -2.91 -0.02 3.17 16 6 C 0.01 0.73 5.30 84.66 0.45 1.18 16 7 N -0.92 -54.02 11.32 21.45 0.24 -53.77 16 8 Si 0.96 43.56 29.54 68.60 2.03 45.59 16 9 H -0.27 -11.44 7.11 99.48 0.71 -10.73 16 10 H -0.27 -11.94 7.11 99.48 0.71 -11.24 16 11 H -0.29 -12.92 7.11 99.48 0.71 -12.21 16 12 N -0.61 -25.73 2.75 -826.79 -2.28 -28.00 16 13 C 0.08 2.52 9.16 127.77 1.17 3.69 16 14 C 0.49 19.85 7.47 87.66 0.65 20.50 16 15 O -0.58 -29.01 12.74 -3.05 -0.04 -29.04 16 16 C -0.12 -3.19 3.53 29.85 0.11 -3.09 16 17 C -0.03 -0.85 1.87 -10.79 -0.02 -0.87 16 18 H 0.05 1.78 7.75 -2.38 -0.02 1.76 16 19 C 0.08 1.44 6.14 86.31 0.53 1.97 16 20 N -0.86 -14.28 9.57 -186.74 -1.79 -16.07 16 21 C -0.14 -4.01 4.28 -10.79 -0.05 -4.06 16 22 C -0.17 -5.66 8.53 30.62 0.26 -5.40 16 23 C -0.16 -3.80 9.67 30.62 0.30 -3.50 16 24 H 0.06 3.59 6.07 -2.39 -0.01 3.57 16 25 H 0.02 0.79 8.14 -2.38 -0.02 0.77 16 26 H 0.04 2.04 7.67 -2.39 -0.02 2.03 16 27 H 0.26 14.67 8.31 -92.71 -0.77 13.90 16 28 H 0.06 1.67 8.14 -2.39 -0.02 1.65 16 29 H 0.09 2.07 6.56 -2.39 -0.02 2.05 16 30 H 0.06 2.19 7.02 -2.39 -0.02 2.17 16 31 H 0.11 2.40 7.63 -2.39 -0.02 2.38 16 32 H 0.11 2.38 6.40 -2.38 -0.02 2.36 16 33 H 0.08 1.39 7.11 -2.39 -0.02 1.37 16 34 H 0.04 0.68 8.14 -2.39 -0.02 0.66 16 35 H 0.35 4.19 9.08 -89.70 -0.81 3.38 16 36 H 0.34 5.07 7.34 -89.70 -0.66 4.42 16 37 H 0.09 2.65 8.11 -2.39 -0.02 2.63 16 38 H 0.07 2.67 7.86 -2.39 -0.02 2.66 16 39 H 0.07 2.48 8.14 -2.39 -0.02 2.46 16 40 H 0.11 2.10 8.14 -2.39 -0.02 2.08 16 41 H 0.10 2.15 7.59 -2.39 -0.02 2.13 16 Total: -1.00 -70.22 322.23 2.09 -68.13 By element: Atomic # 1 Polarization: 24.26 SS G_CDS: -0.45 Total: 23.81 kcal Atomic # 6 Polarization: -15.01 SS G_CDS: 4.37 Total: -10.65 kcal Atomic # 7 Polarization: -94.02 SS G_CDS: -3.82 Total: -97.84 kcal Atomic # 8 Polarization: -29.01 SS G_CDS: -0.04 Total: -29.04 kcal Atomic # 14 Polarization: 43.56 SS G_CDS: 2.03 Total: 45.59 kcal Total: -70.22 2.09 -68.13 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000690542865.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.667 kcal (2) G-P(sol) polarization free energy of solvation -70.216 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.549 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.085 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.131 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.464 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds