Wall clock time and date at job start Mon Mar 30 2020 04:58:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53004 * 109.47054 * 2 1 4 4 C 1.53001 * 109.47011 * 119.99735 * 2 1 3 5 5 N 1.46505 * 109.46893 * 175.00165 * 4 2 1 6 6 C 1.34775 * 119.99838 * 180.02562 * 5 4 2 7 7 O 1.21280 * 120.00095 * 0.02562 * 6 5 4 8 8 C 1.50700 * 119.99932 * 179.97438 * 6 5 4 9 9 H 1.09004 * 109.46857 * 60.00062 * 8 6 5 10 10 C 1.53000 * 109.47243 * 299.99724 * 8 6 5 11 11 N 1.46501 * 109.47045 * 180.02562 * 8 6 5 12 12 C 1.36936 * 119.99809 * 240.44005 * 11 8 6 13 13 H 1.08007 * 119.99866 * 147.40980 * 12 11 8 14 14 C 1.38808 * 120.00167 * 327.41144 * 12 11 8 15 15 N 1.31617 * 119.99885 * 346.15956 * 14 12 11 16 16 Si 1.86808 * 120.00121 * 166.15973 * 14 12 11 17 17 H 1.48502 * 109.46758 * 89.99792 * 16 14 12 18 18 H 1.48499 * 109.47147 * 209.99992 * 16 14 12 19 19 H 1.48501 * 109.46703 * 330.00132 * 16 14 12 20 20 C 1.46501 * 119.99982 * 60.43930 * 11 8 6 21 21 C 1.53005 * 117.51672 * 165.32630 * 20 11 8 22 22 C 1.53001 * 60.00002 * 107.47972 * 21 20 11 23 23 H 1.09000 * 109.47341 * 300.00255 * 1 2 3 24 24 H 1.09004 * 109.46648 * 59.99748 * 1 2 3 25 25 H 1.08993 * 109.47236 * 179.97438 * 1 2 3 26 26 H 1.09003 * 109.47303 * 240.00513 * 2 1 3 27 27 H 1.08998 * 109.47094 * 60.00213 * 3 2 1 28 28 H 1.09004 * 109.46870 * 179.97438 * 3 2 1 29 29 H 1.09000 * 109.47319 * 300.00081 * 3 2 1 30 30 H 1.08997 * 109.46890 * 55.00750 * 4 2 1 31 31 H 1.08996 * 109.47112 * 295.00026 * 4 2 1 32 32 H 0.96996 * 120.00042 * 359.97438 * 5 4 2 33 33 H 1.08994 * 109.47058 * 300.00349 * 10 8 6 34 34 H 1.09000 * 109.46739 * 60.00142 * 10 8 6 35 35 H 1.08999 * 109.47032 * 179.97438 * 10 8 6 36 36 H 0.97000 * 119.99932 * 185.02287 * 15 14 12 37 37 H 1.08990 * 115.55168 * 19.62325 * 20 11 8 38 38 H 1.09001 * 117.49671 * 214.96951 * 21 20 11 39 39 H 1.08998 * 117.49872 * 359.97438 * 21 20 11 40 40 H 1.09004 * 117.50030 * 252.50766 * 22 21 20 41 41 H 1.08995 * 117.50077 * 107.48945 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2493 5 7 3.5001 -0.8263 1.1906 6 6 4.1730 -1.4290 2.1907 7 8 3.5699 -1.8848 3.1391 8 6 5.6749 -1.5377 2.1301 9 1 6.1098 -0.5392 2.0844 10 6 6.0792 -2.3278 0.8839 11 7 6.1631 -2.2292 3.3258 12 6 7.0259 -1.5949 4.1792 13 1 6.9917 -1.8067 5.2378 14 6 7.9445 -0.6796 3.6840 15 7 8.1790 -0.6170 2.3904 16 14 8.8477 0.4633 4.8534 17 1 10.1073 -0.1826 5.3024 18 1 9.1650 1.7353 4.1560 19 1 7.9889 0.7455 6.0316 20 6 5.7283 -3.5993 3.6084 21 6 6.5154 -4.3888 4.6564 22 6 5.1110 -3.8757 4.9809 23 1 -0.3634 0.5139 0.8899 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3633 -1.0276 -0.0005 26 1 1.8934 -0.5138 -0.8900 27 1 1.6767 1.9563 0.8900 28 1 3.1300 1.4425 0.0005 29 1 1.6767 1.9564 -0.8900 30 1 1.6054 -1.7198 1.2951 31 1 1.7516 -0.1582 2.1369 32 1 3.9824 -0.4627 0.4316 33 1 5.6442 -3.3261 0.9297 34 1 5.7159 -1.8136 -0.0059 35 1 7.1655 -2.4059 0.8399 36 1 8.8724 -0.0296 2.0511 37 1 5.3299 -4.1512 2.7571 38 1 6.6348 -5.4601 4.4944 39 1 7.3572 -3.8890 5.1355 40 1 5.0287 -3.0381 5.6737 41 1 4.3065 -4.6093 5.0324 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000706722111.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:58:52 Heat of formation + Delta-G solvation = -18.536134 kcal Electronic energy + Delta-G solvation = -19925.175400 eV Core-core repulsion = 17033.612735 eV Total energy + Delta-G solvation = -2891.562664 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 254.174 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.72508 -38.62776 -37.34975 -35.56428 -34.14142 -33.09705 -30.47975 -28.02949 -27.19909 -26.17438 -24.37943 -22.91044 -21.91964 -21.39089 -20.68452 -18.56034 -17.84805 -17.04088 -16.66540 -16.31330 -16.20646 -15.72108 -15.09138 -14.79137 -14.48830 -14.27291 -13.86734 -13.77992 -13.43965 -13.19495 -12.96845 -12.88475 -12.78254 -12.68520 -12.54673 -12.18278 -12.07715 -11.98737 -11.81434 -11.70504 -11.60542 -11.29714 -10.90426 -10.54177 -10.34162 -9.87878 -8.40771 -7.90911 -5.37816 1.44672 1.47507 1.56278 1.97296 2.37409 2.55144 3.18561 3.46079 3.54565 3.83859 3.98170 4.15819 4.25004 4.29606 4.49800 4.55255 4.62956 4.70531 4.74555 4.78973 4.81062 4.88981 4.95117 4.97472 5.01527 5.06890 5.10482 5.22630 5.34661 5.41062 5.43337 5.47935 5.54464 5.64815 5.70069 5.74921 6.43178 6.75384 7.14442 7.54407 7.85171 8.33155 9.14394 Molecular weight = 254.17amu Principal moments of inertia in cm(-1) A = 0.020012 B = 0.006716 C = 0.005674 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1398.834123 B = 4167.907056 C = 4933.442247 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.098 4.098 3 C -0.148 4.148 4 C 0.125 3.875 5 N -0.725 5.725 6 C 0.486 3.514 7 O -0.571 6.571 8 C 0.171 3.829 9 H 0.102 0.898 10 C -0.124 4.124 11 N -0.548 5.548 12 C -0.264 4.264 13 H 0.049 0.951 14 C -0.029 4.029 15 N -0.913 5.913 16 Si 0.960 3.040 17 H -0.282 1.282 18 H -0.284 1.284 19 H -0.285 1.285 20 C 0.125 3.875 21 C -0.191 4.191 22 C -0.201 4.201 23 H 0.053 0.947 24 H 0.075 0.925 25 H 0.058 0.942 26 H 0.087 0.913 27 H 0.048 0.952 28 H 0.050 0.950 29 H 0.074 0.926 30 H 0.052 0.948 31 H 0.043 0.957 32 H 0.407 0.593 33 H 0.037 0.963 34 H 0.069 0.931 35 H 0.057 0.943 36 H 0.257 0.743 37 H 0.093 0.907 38 H 0.104 0.896 39 H 0.076 0.924 40 H 0.057 0.943 41 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.401 1.157 -8.452 13.452 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.117 4.117 3 C -0.206 4.206 4 C 0.001 3.999 5 N -0.379 5.379 6 C 0.272 3.728 7 O -0.450 6.450 8 C 0.060 3.940 9 H 0.120 0.880 10 C -0.183 4.183 11 N -0.264 5.264 12 C -0.394 4.394 13 H 0.067 0.933 14 C -0.226 4.226 15 N -0.557 5.557 16 Si 0.788 3.212 17 H -0.208 1.208 18 H -0.209 1.209 19 H -0.210 1.210 20 C 0.017 3.983 21 C -0.230 4.230 22 C -0.241 4.241 23 H 0.072 0.928 24 H 0.094 0.906 25 H 0.077 0.923 26 H 0.106 0.894 27 H 0.067 0.933 28 H 0.069 0.931 29 H 0.093 0.907 30 H 0.071 0.929 31 H 0.061 0.939 32 H 0.243 0.757 33 H 0.056 0.944 34 H 0.087 0.913 35 H 0.076 0.924 36 H 0.066 0.934 37 H 0.111 0.889 38 H 0.123 0.877 39 H 0.095 0.905 40 H 0.075 0.925 41 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -10.747 1.018 -7.878 13.364 hybrid contribution 0.832 0.771 0.681 1.323 sum -9.915 1.789 -7.197 12.382 Atomic orbital electron populations 1.21752 0.93113 1.02379 1.02685 1.21315 0.97324 0.96511 0.96566 1.21870 1.00964 0.95391 1.02358 1.21401 0.80072 0.99785 0.98647 1.46146 1.07626 1.60322 1.23849 1.22704 0.92335 0.76214 0.81525 1.90577 1.71000 1.48885 1.34517 1.20327 0.85988 0.99690 0.87965 0.88029 1.21841 1.02198 0.98406 0.95822 1.43157 1.49157 1.08709 1.25399 1.19126 1.10949 1.19979 0.89346 0.93331 1.25681 0.97836 1.01663 0.97398 1.69952 1.32972 1.40731 1.12029 0.85406 0.78517 0.78751 0.78539 1.20844 1.20937 1.21027 1.20954 1.00176 0.86477 0.90742 1.23178 0.94595 0.99386 1.05857 1.23039 0.95471 1.02091 1.03510 0.92798 0.90615 0.92290 0.89450 0.93304 0.93112 0.90672 0.92947 0.93897 0.75664 0.94419 0.91265 0.92404 0.93362 0.88925 0.87740 0.90539 0.92470 0.89115 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.20 9.19 71.98 0.66 -1.54 16 2 C -0.10 -1.85 2.96 -10.79 -0.03 -1.89 16 3 C -0.15 -2.73 9.07 71.98 0.65 -2.07 16 4 C 0.12 3.43 5.07 86.38 0.44 3.87 16 5 N -0.72 -23.09 5.18 -463.06 -2.40 -25.49 16 6 C 0.49 20.66 7.05 87.66 0.62 21.28 16 7 O -0.57 -28.25 15.07 -3.03 -0.05 -28.30 16 8 C 0.17 7.83 2.19 44.24 0.10 7.93 16 9 H 0.10 5.18 5.83 -2.39 -0.01 5.16 16 10 C -0.12 -4.88 8.95 71.98 0.64 -4.24 16 11 N -0.55 -28.04 2.49 -658.37 -1.64 -29.68 16 12 C -0.26 -14.65 8.28 84.03 0.70 -13.95 16 13 H 0.05 2.80 6.92 -2.91 -0.02 2.78 16 14 C -0.03 -1.54 4.96 84.86 0.42 -1.12 16 15 N -0.91 -48.99 10.43 21.65 0.23 -48.77 16 16 Si 0.96 44.24 29.58 68.60 2.03 46.27 16 17 H -0.28 -12.79 7.11 99.48 0.71 -12.09 16 18 H -0.28 -12.76 7.11 99.48 0.71 -12.05 16 19 H -0.28 -13.28 7.11 99.48 0.71 -12.57 16 20 C 0.13 5.79 4.84 44.99 0.22 6.01 16 21 C -0.19 -8.06 9.79 30.60 0.30 -7.76 16 22 C -0.20 -8.80 9.79 30.60 0.30 -8.50 16 23 H 0.05 0.88 8.14 -2.39 -0.02 0.86 16 24 H 0.07 0.93 8.14 -2.38 -0.02 0.91 16 25 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 26 H 0.09 1.47 8.14 -2.39 -0.02 1.45 16 27 H 0.05 0.97 8.14 -2.39 -0.02 0.95 16 28 H 0.05 1.01 7.18 -2.38 -0.02 1.00 16 29 H 0.07 1.08 8.14 -2.39 -0.02 1.06 16 30 H 0.05 1.52 8.14 -2.39 -0.02 1.50 16 31 H 0.04 1.33 8.14 -2.39 -0.02 1.31 16 32 H 0.41 10.93 7.07 -92.71 -0.66 10.27 16 33 H 0.04 1.41 6.88 -2.39 -0.02 1.40 16 34 H 0.07 2.20 7.56 -2.39 -0.02 2.19 16 35 H 0.06 2.59 7.53 -2.39 -0.02 2.57 16 36 H 0.26 13.30 8.32 -92.71 -0.77 12.53 16 37 H 0.09 4.06 6.93 -2.39 -0.02 4.04 16 38 H 0.10 3.68 8.14 -2.39 -0.02 3.66 16 39 H 0.08 3.53 6.87 -2.39 -0.02 3.51 16 40 H 0.06 2.79 8.00 -2.38 -0.02 2.77 16 41 H 0.09 3.54 8.14 -2.39 -0.02 3.52 16 Total: -1.00 -63.86 326.70 3.53 -60.33 By element: Atomic # 1 Polarization: 27.27 SS G_CDS: 0.34 Total: 27.61 kcal Atomic # 6 Polarization: -6.99 SS G_CDS: 5.01 Total: -1.98 kcal Atomic # 7 Polarization: -100.12 SS G_CDS: -3.81 Total: -103.93 kcal Atomic # 8 Polarization: -28.25 SS G_CDS: -0.05 Total: -28.30 kcal Atomic # 14 Polarization: 44.24 SS G_CDS: 2.03 Total: 46.27 kcal Total: -63.86 3.53 -60.33 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000706722111.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.797 kcal (2) G-P(sol) polarization free energy of solvation -63.861 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.064 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.528 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.333 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.536 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds