Wall clock time and date at job start Mon Mar 30 2020 04:48:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08998 * 109.47026 * 2 1 4 4 C 1.50704 * 109.46885 * 120.00092 * 2 1 3 5 5 H 1.08000 * 120.00307 * 119.99658 * 4 2 1 6 6 C 1.37884 * 119.99521 * 299.99659 * 4 2 1 7 7 N 1.31515 * 119.99573 * 179.97438 * 6 4 2 8 8 Si 1.86793 * 120.00270 * 0.02562 * 6 4 2 9 9 H 1.48495 * 109.47444 * 90.00033 * 8 6 4 10 10 H 1.48500 * 109.46949 * 210.00019 * 8 6 4 11 11 H 1.48500 * 109.47188 * 329.99871 * 8 6 4 12 12 N 1.46497 * 109.46811 * 239.99509 * 2 1 3 13 13 C 1.34784 * 119.99874 * 85.00687 * 12 2 1 14 14 O 1.21272 * 119.99683 * 359.97438 * 13 12 2 15 15 C 1.50698 * 120.00032 * 179.97438 * 13 12 2 16 16 C 1.52997 * 109.47191 * 179.97438 * 15 13 12 17 17 H 1.09002 * 109.47045 * 54.99987 * 16 15 13 18 18 C 1.52997 * 109.47232 * 294.99929 * 16 15 13 19 19 C 1.52995 * 109.47310 * 179.97438 * 18 16 15 20 20 C 1.53002 * 109.46602 * 60.00177 * 19 18 16 21 21 C 1.53002 * 109.47454 * 299.99804 * 20 19 18 22 22 C 1.52997 * 109.46978 * 59.99922 * 21 20 19 23 23 H 1.09000 * 109.47140 * 180.02562 * 22 21 20 24 24 N 1.46906 * 109.46907 * 60.00304 * 22 21 20 25 25 H 1.08999 * 109.47037 * 60.00253 * 1 2 3 26 26 H 1.09004 * 109.47874 * 179.97438 * 1 2 3 27 27 H 1.09003 * 109.47405 * 300.00296 * 1 2 3 28 28 H 0.96998 * 120.00129 * 179.97438 * 7 6 4 29 29 H 0.97003 * 120.00464 * 264.99829 * 12 2 1 30 30 H 1.09000 * 109.47344 * 59.99368 * 15 13 12 31 31 H 1.09001 * 109.47069 * 299.99716 * 15 13 12 32 32 H 1.09002 * 109.47153 * 299.99992 * 18 16 15 33 33 H 1.09001 * 109.46832 * 59.99801 * 18 16 15 34 34 H 1.08999 * 109.47330 * 179.97438 * 19 18 16 35 35 H 1.08992 * 109.47458 * 300.00366 * 19 18 16 36 36 H 1.09002 * 109.47067 * 59.99942 * 20 19 18 37 37 H 1.09004 * 109.46930 * 179.97438 * 20 19 18 38 38 H 1.09001 * 109.46380 * 300.00332 * 21 20 19 39 39 H 1.09001 * 109.47142 * 180.02562 * 21 20 19 40 40 H 1.00896 * 111.00309 * 59.99727 * 24 22 21 41 41 H 1.00902 * 110.99923 * 183.95891 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7105 1.2305 5 1 2.6531 -1.5886 1.1315 6 6 1.6991 -0.2393 2.4828 7 7 2.1370 -0.8595 3.5566 8 14 0.6247 1.2791 2.6541 9 1 -0.8029 0.8729 2.6997 10 1 0.9759 1.9952 3.9067 11 1 0.8470 2.1765 1.4920 12 7 2.0182 -0.6907 -1.1961 13 6 2.1470 -0.0184 -2.3572 14 8 1.8583 1.1582 -2.4117 15 6 2.6498 -0.7287 -3.5874 16 6 2.7007 0.2542 -4.7588 17 1 3.3016 1.1200 -4.4808 18 6 1.2814 0.7085 -5.1054 19 6 1.3323 1.6918 -6.2764 20 6 1.9592 1.0055 -7.4917 21 6 3.3785 0.5512 -7.1452 22 6 3.3276 -0.4321 -5.9741 23 1 4.3388 -0.7554 -5.7269 24 7 2.5179 -1.5990 -6.3494 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3635 -1.0277 -0.0005 27 1 -0.3634 0.5139 0.8900 28 1 1.9030 -0.5279 4.4376 29 1 2.2489 -1.6319 -1.1525 30 1 1.9776 -1.5510 -3.8325 31 1 3.6491 -1.1206 -3.3978 32 1 0.6805 -0.1574 -5.3835 33 1 0.8350 1.1977 -4.2397 34 1 0.3212 2.0151 -6.5236 35 1 1.9331 2.5575 -5.9980 36 1 1.3584 0.1397 -7.7701 37 1 1.9951 1.7059 -8.3262 38 1 3.9793 1.4170 -6.8668 39 1 3.8253 0.0626 -8.0112 40 1 2.9114 -2.0698 -7.1503 41 1 2.4152 -2.2332 -5.5713 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000710709266.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:48:07 Heat of formation + Delta-G solvation = -84.064547 kcal Electronic energy + Delta-G solvation = -19613.301773 eV Core-core repulsion = 16718.897584 eV Total energy + Delta-G solvation = -2894.404189 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 254.174 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.06867 -39.46591 -36.80764 -34.41508 -34.06143 -33.26719 -31.69824 -29.65445 -27.59296 -27.18375 -23.69599 -23.02610 -22.03579 -21.09247 -19.84258 -19.05261 -17.81247 -17.38890 -16.70565 -16.41228 -16.09250 -15.80991 -15.37707 -15.02006 -14.92729 -14.54949 -14.24071 -14.13428 -13.79961 -13.58063 -13.27775 -13.01905 -12.84865 -12.65124 -12.57058 -12.23009 -12.14267 -11.77007 -11.62345 -11.37851 -11.28393 -11.09303 -11.00734 -10.87017 -10.40641 -9.80366 -9.37311 -8.39271 -6.44700 1.25994 1.34176 1.43760 1.84904 2.25125 2.53372 2.97163 3.67990 3.73960 3.86399 4.04496 4.11220 4.31743 4.40826 4.44776 4.52691 4.56426 4.58501 4.64468 4.70365 4.76075 4.79981 4.90487 5.00152 5.07118 5.14272 5.21098 5.32595 5.40487 5.42093 5.44328 5.46431 5.59300 5.70171 5.73944 6.14665 6.39192 6.57254 6.76493 6.93979 7.19522 7.53692 8.76058 Molecular weight = 254.17amu Principal moments of inertia in cm(-1) A = 0.042699 B = 0.004630 C = 0.004372 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 655.598759 B = 6045.660068 C = 6402.432327 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.241 3.759 3 H 0.019 0.981 4 C -0.533 4.533 5 H 0.057 0.943 6 C 0.029 3.971 7 N -0.934 5.934 8 Si 0.939 3.061 9 H -0.260 1.260 10 H -0.292 1.292 11 H -0.265 1.265 12 N -0.705 5.705 13 C 0.499 3.501 14 O -0.589 6.589 15 C -0.128 4.128 16 C -0.060 4.060 17 H 0.055 0.945 18 C -0.106 4.106 19 C -0.115 4.115 20 C -0.103 4.103 21 C -0.111 4.111 22 C 0.103 3.897 23 H 0.042 0.958 24 N -0.843 5.843 25 H 0.043 0.957 26 H 0.064 0.936 27 H 0.039 0.961 28 H 0.270 0.730 29 H 0.406 0.594 30 H 0.115 0.885 31 H 0.107 0.893 32 H 0.069 0.931 33 H 0.040 0.960 34 H 0.055 0.945 35 H 0.044 0.956 36 H 0.073 0.927 37 H 0.059 0.941 38 H 0.059 0.941 39 H 0.075 0.925 40 H 0.349 0.651 41 H 0.345 0.655 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.968 -1.515 -22.028 22.102 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.136 3.864 3 H 0.037 0.963 4 C -0.571 4.571 5 H 0.075 0.925 6 C -0.170 4.170 7 N -0.573 5.573 8 Si 0.767 3.233 9 H -0.185 1.185 10 H -0.219 1.219 11 H -0.190 1.190 12 N -0.354 5.354 13 C 0.287 3.713 14 O -0.471 6.471 15 C -0.168 4.168 16 C -0.079 4.079 17 H 0.073 0.927 18 C -0.143 4.143 19 C -0.153 4.153 20 C -0.141 4.141 21 C -0.149 4.149 22 C -0.008 4.008 23 H 0.060 0.940 24 N -0.376 5.376 25 H 0.063 0.937 26 H 0.083 0.917 27 H 0.057 0.943 28 H 0.079 0.921 29 H 0.242 0.758 30 H 0.133 0.867 31 H 0.126 0.874 32 H 0.087 0.913 33 H 0.059 0.941 34 H 0.074 0.926 35 H 0.063 0.937 36 H 0.091 0.909 37 H 0.078 0.922 38 H 0.077 0.923 39 H 0.094 0.906 40 H 0.162 0.838 41 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges 0.191 -0.176 -21.985 21.986 hybrid contribution 0.548 -0.196 1.226 1.357 sum 0.740 -0.372 -20.759 20.776 Atomic orbital electron populations 1.22325 0.97997 1.01576 0.99240 1.18712 0.91089 0.93070 0.83550 0.96333 1.21283 1.32281 1.13541 0.89969 0.92469 1.25546 0.96826 0.99267 0.95389 1.69972 1.46747 1.41900 0.98644 0.86003 0.79842 0.80415 0.77087 1.18546 1.21907 1.19026 1.46089 1.65713 1.14342 1.09277 1.21417 0.77164 0.87234 0.85472 1.90605 1.52638 1.18148 1.85663 1.21781 1.03920 0.99936 0.91177 1.20874 0.97608 0.96720 0.92728 0.92699 1.21460 0.96302 0.99188 0.97365 1.21465 1.00211 0.97762 0.95838 1.21355 0.96246 1.00159 0.96337 1.21558 0.97342 0.98379 0.97630 1.21213 0.93971 0.91811 0.93831 0.93986 1.58686 1.55794 1.11587 1.11571 0.93747 0.91653 0.94293 0.92051 0.75832 0.86666 0.87434 0.91276 0.94081 0.92627 0.93718 0.90879 0.92197 0.92273 0.90624 0.83751 0.84095 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -6.77 8.96 71.98 0.65 -6.12 16 2 C 0.24 11.55 2.15 44.25 0.10 11.65 16 3 H 0.02 1.01 6.64 -2.39 -0.02 0.99 16 4 C -0.53 -29.20 9.31 25.60 0.24 -28.96 16 5 H 0.06 3.31 7.98 -2.91 -0.02 3.29 16 6 C 0.03 1.67 5.45 84.66 0.46 2.13 16 7 N -0.93 -56.16 13.96 21.45 0.30 -55.86 16 8 Si 0.94 45.33 24.37 68.60 1.67 47.01 16 9 H -0.26 -11.78 6.87 99.48 0.68 -11.10 16 10 H -0.29 -13.86 7.11 99.48 0.71 -13.15 16 11 H -0.27 -12.86 6.53 99.48 0.65 -12.21 16 12 N -0.70 -27.28 5.07 -446.11 -2.26 -29.54 16 13 C 0.50 17.97 7.51 87.66 0.66 18.63 16 14 O -0.59 -26.00 13.63 -3.01 -0.04 -26.05 16 15 C -0.13 -3.06 4.70 29.85 0.14 -2.92 16 16 C -0.06 -1.44 1.66 -10.80 -0.02 -1.46 16 17 H 0.05 1.58 7.95 -2.39 -0.02 1.56 16 18 C -0.11 -2.82 4.79 30.59 0.15 -2.67 16 19 C -0.12 -2.68 5.92 30.59 0.18 -2.50 16 20 C -0.10 -1.88 5.77 30.60 0.18 -1.70 16 21 C -0.11 -1.82 5.61 30.59 0.17 -1.65 16 22 C 0.10 1.76 3.09 44.91 0.14 1.90 16 23 H 0.04 0.66 8.14 -2.39 -0.02 0.64 16 24 N -0.84 -11.72 7.70 -168.67 -1.30 -13.01 16 25 H 0.04 1.86 8.14 -2.39 -0.02 1.84 16 26 H 0.06 2.68 8.14 -2.38 -0.02 2.66 16 27 H 0.04 1.76 3.27 -2.39 -0.01 1.75 16 28 H 0.27 15.25 8.31 -92.71 -0.77 14.48 16 29 H 0.41 13.57 8.54 -92.71 -0.79 12.78 16 30 H 0.12 2.21 6.84 -2.39 -0.02 2.20 16 31 H 0.11 2.12 8.14 -2.39 -0.02 2.10 16 32 H 0.07 1.76 7.60 -2.39 -0.02 1.75 16 33 H 0.04 1.41 5.95 -2.39 -0.01 1.39 16 34 H 0.05 1.26 8.14 -2.39 -0.02 1.24 16 35 H 0.04 1.11 8.14 -2.39 -0.02 1.09 16 36 H 0.07 1.35 7.60 -2.39 -0.02 1.33 16 37 H 0.06 0.97 8.14 -2.38 -0.02 0.95 16 38 H 0.06 1.03 8.14 -2.39 -0.02 1.01 16 39 H 0.08 0.98 8.14 -2.39 -0.02 0.96 16 40 H 0.35 3.56 9.04 -89.70 -0.81 2.75 16 41 H 0.34 4.33 7.15 -89.69 -0.64 3.68 16 Total: -1.00 -67.26 310.30 0.12 -67.14 By element: Atomic # 1 Polarization: 25.28 SS G_CDS: -1.28 Total: 24.00 kcal Atomic # 6 Polarization: -16.71 SS G_CDS: 3.04 Total: -13.67 kcal Atomic # 7 Polarization: -95.16 SS G_CDS: -3.26 Total: -98.42 kcal Atomic # 8 Polarization: -26.00 SS G_CDS: -0.04 Total: -26.05 kcal Atomic # 14 Polarization: 45.33 SS G_CDS: 1.67 Total: 47.01 kcal Total: -67.26 0.12 -67.14 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000710709266.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.929 kcal (2) G-P(sol) polarization free energy of solvation -67.259 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.188 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.124 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.135 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.065 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds