Wall clock time and date at job start Mon Mar 30 2020 04:43:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08998 * 109.47533 * 2 1 4 4 C 1.50697 * 109.47466 * 120.00144 * 2 1 3 5 5 H 1.07998 * 120.00039 * 119.99581 * 4 2 1 6 6 C 1.37880 * 119.99815 * 300.00179 * 4 2 1 7 7 N 1.31508 * 119.99915 * 359.97438 * 6 4 2 8 8 Si 1.86805 * 119.99777 * 179.97438 * 6 4 2 9 9 H 1.48506 * 109.46954 * 59.99790 * 8 6 4 10 10 H 1.48496 * 109.47069 * 180.02562 * 8 6 4 11 11 H 1.48506 * 109.47158 * 300.00368 * 8 6 4 12 12 N 1.46506 * 109.47289 * 240.00326 * 2 1 3 13 13 C 1.46499 * 119.99936 * 299.99999 * 12 2 1 14 14 C 1.34777 * 120.00000 * 119.99453 * 12 2 1 15 15 O 1.21274 * 120.00145 * 0.02562 * 14 12 2 16 16 C 1.50696 * 119.99735 * 180.02562 * 14 12 2 17 17 C 1.52998 * 109.46973 * 180.02562 * 16 14 12 18 18 H 1.08993 * 110.67533 * 54.29986 * 17 16 14 19 19 C 1.54894 * 110.75576 * 291.06242 * 17 16 14 20 20 C 1.54474 * 104.10100 * 203.89463 * 19 17 16 21 21 C 1.53872 * 106.68493 * 23.34483 * 20 19 17 22 22 H 1.09000 * 110.03204 * 240.87604 * 21 20 19 23 23 N 1.46897 * 110.07346 * 119.46239 * 21 20 19 24 24 C 1.54272 * 106.59989 * 0.15424 * 21 20 19 25 25 H 1.09002 * 109.47153 * 299.99629 * 1 2 3 26 26 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 27 27 H 1.09004 * 109.47261 * 59.99801 * 1 2 3 28 28 H 0.97001 * 119.99839 * 180.02562 * 7 6 4 29 29 H 1.09000 * 109.46842 * 89.99634 * 13 12 2 30 30 H 1.08994 * 109.47173 * 210.00167 * 13 12 2 31 31 H 1.08998 * 109.46730 * 330.00200 * 13 12 2 32 32 H 1.09002 * 109.47152 * 300.00044 * 16 14 12 33 33 H 1.09000 * 109.47333 * 60.00571 * 16 14 12 34 34 H 1.08996 * 110.48656 * 322.42342 * 19 17 16 35 35 H 1.09003 * 110.48316 * 85.06901 * 19 17 16 36 36 H 1.09001 * 109.85439 * 264.10226 * 20 19 17 37 37 H 1.08995 * 110.15973 * 142.74986 * 20 19 17 38 38 H 1.00901 * 110.99265 * 62.81296 * 23 21 20 39 39 H 1.00899 * 110.99675 * 186.75866 * 23 21 20 40 40 H 1.08996 * 110.49045 * 217.71356 * 24 21 20 41 41 H 1.09006 * 110.59446 * 95.12541 * 24 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7104 1.2304 5 1 2.6532 -1.5885 1.1313 6 6 1.6993 -0.2394 2.4827 7 7 0.9436 0.8301 2.6034 8 14 2.3215 -1.1204 4.0079 9 1 3.8065 -1.1210 4.0080 10 1 1.8261 -0.4208 5.2204 11 1 1.8261 -2.5204 4.0076 12 7 2.0184 -0.6906 -1.1962 13 6 1.6645 -2.0931 -1.4281 14 6 2.7931 -0.0355 -2.0834 15 8 3.0864 1.1255 -1.8913 16 6 3.2950 -0.7457 -3.3141 17 6 4.1455 0.2158 -4.1466 18 1 4.9422 0.6477 -3.5410 19 6 3.2657 1.3278 -4.7701 20 6 4.0718 1.8001 -6.0003 21 6 5.0022 0.6385 -6.3913 22 1 6.0431 0.9543 -6.3221 23 7 4.7024 0.1905 -7.7578 24 6 4.7283 -0.5020 -5.3892 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3634 0.5139 -0.8900 28 1 0.7096 1.1617 3.4844 29 1 0.7376 -2.1442 -1.9994 30 1 2.4629 -2.5818 -1.9864 31 1 1.5295 -2.5968 -0.4710 32 1 3.9004 -1.6023 -3.0178 33 1 2.4470 -1.0878 -3.9074 34 1 2.3021 0.9231 -5.0797 35 1 3.1277 2.1461 -4.0634 36 1 4.6612 2.6796 -5.7412 37 1 3.3976 2.0322 -6.8246 38 1 4.8768 0.9263 -8.4259 39 1 5.2268 -0.6398 -7.9893 40 1 5.6549 -1.0158 -5.1334 41 1 4.0033 -1.2059 -5.7982 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000711413206.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:43:31 Heat of formation + Delta-G solvation = -54.325086 kcal Electronic energy + Delta-G solvation = -19474.342753 eV Core-core repulsion = 16581.228164 eV Total energy + Delta-G solvation = -2893.114590 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 254.174 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -39.42536 -38.00139 -35.26515 -33.35590 -32.76674 -30.39805 -29.13125 -27.62029 -26.01786 -25.20671 -24.76036 -21.27313 -19.88515 -19.77420 -18.11243 -16.63324 -16.20763 -16.02981 -15.40137 -15.12894 -15.00084 -14.56269 -14.22277 -13.47674 -13.25654 -12.67540 -12.54717 -12.32530 -11.71873 -11.68897 -11.51275 -11.32318 -11.14582 -11.02345 -10.93303 -10.83297 -10.81307 -10.61960 -10.38481 -10.29943 -10.22211 -10.12991 -9.14297 -8.85564 -8.77394 -8.38707 -7.50549 -6.04416 -4.12394 3.29040 3.34171 3.35572 3.51712 4.02155 4.36753 4.43125 4.64619 4.66708 5.08407 5.25826 5.28214 5.33577 5.46543 5.55524 5.66281 5.75200 5.80219 5.84722 5.93795 5.96846 6.09013 6.16107 6.18622 6.24073 6.41796 6.54387 6.66950 6.79955 6.88585 7.04628 7.11855 7.25156 7.49758 7.59091 7.75965 8.06345 8.24689 8.62035 8.87325 9.16484 9.54205 11.00793 Molecular weight = 254.17amu Principal moments of inertia in cm(-1) A = 0.041111 B = 0.004386 C = 0.004333 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 680.921801 B = 6382.683493 C = 6460.017192 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.257 3.743 3 H 0.063 0.937 4 C -0.526 4.526 5 H 0.058 0.942 6 C 0.064 3.936 7 N -0.888 5.888 8 Si 0.898 3.102 9 H -0.277 1.277 10 H -0.286 1.286 11 H -0.277 1.277 12 N -0.596 5.596 13 C 0.084 3.916 14 C 0.503 3.497 15 O -0.552 6.552 16 C -0.131 4.131 17 C -0.072 4.072 18 H 0.082 0.918 19 C -0.111 4.111 20 C -0.119 4.119 21 C 0.085 3.915 22 H 0.034 0.966 23 N -0.845 5.845 24 C -0.116 4.116 25 H 0.092 0.908 26 H 0.028 0.972 27 H 0.010 0.990 28 H 0.263 0.737 29 H 0.041 0.959 30 H 0.053 0.947 31 H 0.078 0.922 32 H 0.085 0.915 33 H 0.085 0.915 34 H 0.060 0.940 35 H 0.079 0.921 36 H 0.059 0.941 37 H 0.069 0.931 38 H 0.338 0.662 39 H 0.338 0.662 40 H 0.060 0.940 41 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.294 -4.159 -16.036 17.391 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.157 3.843 3 H 0.080 0.920 4 C -0.565 4.565 5 H 0.076 0.924 6 C -0.138 4.138 7 N -0.526 5.526 8 Si 0.726 3.274 9 H -0.203 1.203 10 H -0.212 1.212 11 H -0.203 1.203 12 N -0.328 5.328 13 C -0.060 4.060 14 C 0.290 3.710 15 O -0.431 6.431 16 C -0.172 4.172 17 C -0.091 4.091 18 H 0.100 0.900 19 C -0.149 4.149 20 C -0.157 4.157 21 C -0.026 4.026 22 H 0.052 0.948 23 N -0.375 5.375 24 C -0.154 4.154 25 H 0.111 0.889 26 H 0.047 0.953 27 H 0.029 0.971 28 H 0.073 0.927 29 H 0.060 0.940 30 H 0.072 0.928 31 H 0.097 0.903 32 H 0.103 0.897 33 H 0.104 0.896 34 H 0.079 0.921 35 H 0.097 0.903 36 H 0.078 0.922 37 H 0.087 0.913 38 H 0.150 0.850 39 H 0.150 0.850 40 H 0.079 0.921 41 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 4.596 -3.516 -15.493 16.538 hybrid contribution 1.281 -0.501 0.706 1.546 sum 5.877 -4.018 -14.786 16.411 Atomic orbital electron populations 1.22075 0.98337 0.99295 1.00692 1.18896 0.90782 0.94535 0.80070 0.91964 1.21300 1.31778 1.12977 0.90410 0.92375 1.24894 0.94970 0.94992 0.98930 1.69873 1.36360 1.22585 1.23794 0.86566 0.79221 0.79574 0.82064 1.20273 1.21180 1.20257 1.48248 1.49264 1.11564 1.23676 1.21577 0.98713 0.83487 1.02192 1.20436 0.79092 0.87216 0.84295 1.90616 1.58415 1.17193 1.76915 1.21707 1.00528 0.99266 0.95650 1.21795 0.97801 0.95024 0.94489 0.89991 1.22375 0.97686 0.99003 0.95820 1.22241 0.98194 0.96684 0.98594 1.21997 0.96527 0.95571 0.88516 0.94783 1.58906 1.65356 1.09900 1.03295 1.22515 1.00763 0.97264 0.94880 0.88945 0.95259 0.97089 0.92669 0.94040 0.92840 0.90280 0.89693 0.89648 0.92080 0.90261 0.92202 0.91258 0.85030 0.85030 0.92143 0.90497 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.56 8.97 37.16 0.33 -3.22 16 2 C 0.26 6.69 2.64 -69.08 -0.18 6.51 16 3 H 0.06 1.88 6.90 -51.93 -0.36 1.52 16 4 C -0.53 -14.38 7.99 -34.44 -0.28 -14.65 16 5 H 0.06 1.56 7.33 -52.49 -0.38 1.17 16 6 C 0.06 1.78 5.30 -17.82 -0.09 1.68 16 7 N -0.89 -25.41 11.32 55.43 0.63 -24.78 16 8 Si 0.90 21.18 29.54 -169.99 -5.02 16.16 16 9 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 10 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 11 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 12 N -0.60 -12.88 2.75 -175.27 -0.48 -13.37 16 13 C 0.08 1.44 9.24 59.85 0.55 1.99 16 14 C 0.50 10.39 7.48 -10.99 -0.08 10.31 16 15 O -0.55 -13.46 14.00 5.56 0.08 -13.38 16 16 C -0.13 -1.96 3.75 -27.89 -0.10 -2.07 16 17 C -0.07 -1.01 2.46 -88.62 -0.22 -1.23 16 18 H 0.08 1.29 7.97 -51.93 -0.41 0.87 16 19 C -0.11 -1.60 5.69 -24.96 -0.14 -1.74 16 20 C -0.12 -1.41 6.59 -25.50 -0.17 -1.58 16 21 C 0.08 0.89 4.03 -66.59 -0.27 0.62 16 22 H 0.03 0.35 8.14 -51.93 -0.42 -0.08 16 23 N -0.84 -7.53 9.11 -3.72 -0.03 -7.56 16 24 C -0.12 -1.29 5.93 -25.07 -0.15 -1.44 16 25 H 0.09 2.47 6.07 -51.93 -0.32 2.15 16 26 H 0.03 0.66 7.67 -51.93 -0.40 0.26 16 27 H 0.01 0.23 8.14 -51.93 -0.42 -0.19 16 28 H 0.26 7.18 8.31 -40.82 -0.34 6.84 16 29 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16 30 H 0.05 0.74 6.44 -51.93 -0.33 0.40 16 31 H 0.08 1.44 7.02 -51.93 -0.36 1.07 16 32 H 0.08 1.13 7.40 -51.93 -0.38 0.74 16 33 H 0.09 1.14 8.01 -51.93 -0.42 0.72 16 34 H 0.06 0.88 7.98 -51.93 -0.41 0.46 16 35 H 0.08 1.34 7.21 -51.93 -0.37 0.97 16 36 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 37 H 0.07 0.79 7.92 -51.93 -0.41 0.38 16 38 H 0.34 2.51 9.07 -39.29 -0.36 2.15 16 39 H 0.34 2.49 9.01 -39.29 -0.35 2.13 16 40 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 41 H 0.08 0.85 7.96 -51.93 -0.41 0.44 16 LS Contribution 321.09 15.07 4.84 4.84 Total: -1.00 -30.91 321.09 -7.73 -38.64 By element: Atomic # 1 Polarization: 11.22 SS G_CDS: -6.94 Total: 4.27 kcal Atomic # 6 Polarization: -4.02 SS G_CDS: -0.80 Total: -4.82 kcal Atomic # 7 Polarization: -45.82 SS G_CDS: 0.11 Total: -45.71 kcal Atomic # 8 Polarization: -13.46 SS G_CDS: 0.08 Total: -13.38 kcal Atomic # 14 Polarization: 21.18 SS G_CDS: -5.02 Total: 16.16 kcal Total LS contribution 4.84 Total: 4.84 kcal Total: -30.91 -7.73 -38.64 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000711413206.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.684 kcal (2) G-P(sol) polarization free energy of solvation -30.909 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.592 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.733 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.641 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.325 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds