Wall clock time and date at job start Mon Mar 30 2020 04:26:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46499 * 109.46941 * 2 1 4 4 C 1.46492 * 120.00237 * 269.99821 * 3 2 1 5 5 C 1.53003 * 109.47659 * 274.44644 * 4 3 2 6 6 C 1.34780 * 119.99667 * 90.00330 * 3 2 1 7 7 O 1.21281 * 120.00373 * 5.15541 * 6 3 2 8 8 C 1.50705 * 119.99686 * 185.15527 * 6 3 2 9 9 H 1.08997 * 110.46114 * 36.63562 * 8 6 3 10 10 C 1.54384 * 110.41071 * 274.21974 * 8 6 3 11 11 C 1.54252 * 105.06125 * 217.36981 * 10 8 6 12 12 C 1.54376 * 105.06228 * 0.02562 * 11 10 8 13 13 N 1.48558 * 110.40967 * 159.05184 * 8 6 3 14 14 C 1.46900 * 110.99850 * 277.81738 * 13 8 6 15 15 C 1.50702 * 109.47337 * 170.00277 * 14 13 8 16 16 H 1.07997 * 119.99522 * 359.97438 * 15 14 13 17 17 C 1.37872 * 120.00168 * 180.27328 * 15 14 13 18 18 N 1.31513 * 120.00031 * 179.71874 * 17 15 14 19 19 Si 1.86806 * 119.99805 * 359.72645 * 17 15 14 20 20 H 1.48496 * 109.47073 * 89.99961 * 19 17 15 21 21 H 1.48508 * 109.46821 * 209.99844 * 19 17 15 22 22 H 1.48492 * 109.47233 * 329.99514 * 19 17 15 23 23 H 1.09001 * 109.47188 * 299.99424 * 1 2 3 24 24 H 1.08996 * 109.47475 * 59.99770 * 1 2 3 25 25 H 1.09005 * 109.47304 * 179.97438 * 1 2 3 26 26 H 1.09005 * 109.46988 * 240.00101 * 2 1 3 27 27 H 1.09000 * 109.47115 * 119.99923 * 2 1 3 28 28 H 1.09004 * 109.47155 * 34.45132 * 4 3 2 29 29 H 1.09001 * 109.47294 * 154.44326 * 4 3 2 30 30 H 1.08999 * 109.46655 * 305.17075 * 5 4 3 31 31 H 1.08996 * 109.47018 * 65.16425 * 5 4 3 32 32 H 1.08999 * 109.47469 * 185.16991 * 5 4 3 33 33 H 1.09003 * 110.32655 * 336.26769 * 10 8 6 34 34 H 1.09005 * 110.32215 * 98.47333 * 10 8 6 35 35 H 1.09004 * 110.32374 * 118.89829 * 11 10 8 36 36 H 1.09001 * 110.32327 * 241.10523 * 11 10 8 37 37 H 1.09004 * 110.41263 * 265.07592 * 12 11 10 38 38 H 1.09004 * 110.41345 * 142.62656 * 12 11 10 39 39 H 1.09002 * 109.47285 * 49.99774 * 14 13 8 40 40 H 1.09004 * 109.46822 * 289.99942 * 14 13 8 41 41 H 0.97005 * 120.00074 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2624 2.0718 -1.2686 5 6 3.6711 1.7417 -1.7663 6 6 2.2429 2.0165 1.1673 7 8 2.1311 1.4168 2.2155 8 6 2.6331 3.4722 1.1699 9 1 2.1085 4.0087 0.3794 10 6 4.1603 3.6205 0.9996 11 6 4.5511 4.8075 1.9039 12 6 3.2273 5.2761 2.5451 13 7 2.3428 4.0839 2.4922 14 6 0.9296 4.4716 2.5940 15 6 0.6155 4.8570 4.0166 16 1 1.3884 4.8174 4.7699 17 6 -0.6599 5.2542 4.3578 18 7 -0.9353 5.5852 5.6004 19 14 -1.9969 5.3220 3.0549 20 1 -2.6905 4.0106 2.9887 21 1 -2.9757 6.3826 3.4048 22 1 -1.3874 5.6268 1.7356 23 1 -0.3634 0.5137 0.8900 24 1 -0.3634 0.5138 -0.8899 25 1 -0.3634 -1.0277 -0.0005 26 1 1.8933 -0.5138 -0.8900 27 1 1.8933 -0.5138 0.8900 28 1 1.5303 1.7450 -2.0071 29 1 2.1726 3.1479 -1.1197 30 1 4.3968 1.9843 -0.9900 31 1 3.7333 0.6795 -2.0026 32 1 3.8868 2.3261 -2.6607 33 1 4.6677 2.7127 1.3262 34 1 4.4059 3.8394 -0.0396 35 1 5.2502 4.4823 2.6744 36 1 4.9884 5.6090 1.3086 37 1 2.7952 6.0950 1.9699 38 1 3.3925 5.5817 3.5783 39 1 0.3003 3.6324 2.2975 40 1 0.7373 5.3199 1.9369 41 1 -1.8326 5.8650 5.8404 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000067653473.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:26:49 Heat of formation + Delta-G solvation = -25.757587 kcal Electronic energy + Delta-G solvation = -20203.273948 eV Core-core repulsion = 17311.398138 eV Total energy + Delta-G solvation = -2891.875810 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 254.174 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.07056 -37.66215 -35.84282 -33.09453 -32.20672 -31.18483 -29.79085 -28.50143 -26.87613 -23.91489 -23.40918 -22.14514 -20.95570 -20.12426 -18.41458 -17.28431 -16.59601 -16.22489 -15.46475 -14.86701 -14.31173 -14.07352 -13.97046 -13.71512 -13.34650 -13.09898 -12.85139 -12.63120 -12.54577 -12.42823 -12.04319 -11.91324 -11.70938 -11.41793 -11.16239 -11.11151 -10.94328 -10.74524 -10.45806 -10.41335 -10.24566 -9.83020 -9.35345 -9.13046 -8.53165 -8.50921 -7.51084 -5.99540 -3.95792 3.02584 3.13158 3.30536 3.37037 3.37523 4.45539 4.58624 4.75991 4.86070 4.96722 5.06633 5.10390 5.20344 5.29585 5.30606 5.38220 5.40815 5.46573 5.56232 5.57485 5.71281 5.76605 5.78645 6.02019 6.02824 6.05208 6.07184 6.21331 6.28354 6.49040 6.55532 6.71388 6.78102 6.89710 7.45400 7.64633 7.86828 7.88659 8.62193 8.71672 9.11166 9.61919 11.13972 Molecular weight = 254.17amu Principal moments of inertia in cm(-1) A = 0.018842 B = 0.007847 C = 0.006287 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1485.647474 B = 3567.444626 C = 4452.377754 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.114 3.886 3 N -0.624 5.624 4 C 0.103 3.897 5 C -0.173 4.173 6 C 0.525 3.475 7 O -0.502 6.502 8 C 0.038 3.962 9 H 0.062 0.938 10 C -0.107 4.107 11 C -0.124 4.124 12 C 0.046 3.954 13 N -0.472 5.472 14 C 0.155 3.845 15 C -0.500 4.500 16 H 0.082 0.918 17 C 0.068 3.932 18 N -0.900 5.900 19 Si 0.872 3.128 20 H -0.276 1.276 21 H -0.285 1.285 22 H -0.270 1.270 23 H 0.062 0.938 24 H 0.052 0.948 25 H 0.063 0.937 26 H 0.070 0.930 27 H 0.083 0.917 28 H 0.073 0.927 29 H 0.081 0.919 30 H 0.063 0.937 31 H 0.055 0.945 32 H 0.064 0.936 33 H 0.070 0.930 34 H 0.069 0.931 35 H 0.070 0.930 36 H 0.064 0.936 37 H 0.038 0.962 38 H 0.087 0.913 39 H 0.021 0.979 40 H -0.009 1.009 41 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.578 -6.326 -17.791 20.739 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.009 4.009 3 N -0.361 5.361 4 C -0.020 4.020 5 C -0.231 4.231 6 C 0.312 3.688 7 O -0.374 6.374 8 C -0.075 4.075 9 H 0.079 0.921 10 C -0.145 4.145 11 C -0.162 4.162 12 C -0.082 4.082 13 N -0.197 5.197 14 C 0.029 3.971 15 C -0.538 4.538 16 H 0.100 0.900 17 C -0.133 4.133 18 N -0.540 5.540 19 Si 0.700 3.300 20 H -0.202 1.202 21 H -0.211 1.211 22 H -0.195 1.195 23 H 0.081 0.919 24 H 0.071 0.929 25 H 0.082 0.918 26 H 0.088 0.912 27 H 0.101 0.899 28 H 0.092 0.908 29 H 0.099 0.901 30 H 0.082 0.918 31 H 0.075 0.925 32 H 0.083 0.917 33 H 0.089 0.911 34 H 0.087 0.913 35 H 0.089 0.911 36 H 0.083 0.917 37 H 0.057 0.943 38 H 0.106 0.894 39 H 0.039 0.961 40 H 0.008 0.992 41 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 8.445 -6.962 -16.612 19.893 hybrid contribution -1.226 0.610 -1.429 1.979 sum 7.219 -6.352 -18.041 20.443 Atomic orbital electron populations 1.22150 0.96191 1.01907 1.02525 1.21303 0.94158 0.82771 1.02644 1.48086 1.67776 1.14238 1.06012 1.21551 0.96807 0.98036 0.85650 1.22281 0.97353 1.01946 1.01515 1.20516 0.76418 0.88964 0.82931 1.90708 1.48686 1.67110 1.30873 1.22661 0.97019 0.92741 0.95037 0.92061 1.22235 0.93100 0.99678 0.99537 1.22344 0.98381 0.96870 0.98644 1.22978 0.91447 0.92103 1.01685 1.65140 1.07574 1.23031 1.23946 1.20342 0.84343 0.93874 0.98568 1.20941 0.96913 1.43217 0.92771 0.90040 1.24874 0.98128 0.95171 0.95111 1.69891 1.20842 1.46173 1.17045 0.86908 0.82425 0.78101 0.82614 1.20179 1.21100 1.19469 0.91901 0.92875 0.91850 0.91166 0.89910 0.90848 0.90086 0.91842 0.92547 0.91678 0.91121 0.91251 0.91072 0.91682 0.94325 0.89440 0.96135 0.99190 0.92724 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.12 10.24 37.16 0.38 -1.74 16 2 C 0.11 1.43 6.19 -4.04 -0.03 1.40 16 3 N -0.62 -8.80 2.47 -173.69 -0.43 -9.23 16 4 C 0.10 1.05 6.02 -4.04 -0.02 1.03 16 5 C -0.17 -1.43 10.15 37.16 0.38 -1.05 16 6 C 0.52 9.77 6.41 -10.98 -0.07 9.70 16 7 O -0.50 -11.72 16.17 5.56 0.09 -11.63 16 8 C 0.04 0.67 1.79 -67.22 -0.12 0.55 16 9 H 0.06 1.01 6.21 -51.93 -0.32 0.69 16 10 C -0.11 -1.50 5.50 -25.35 -0.14 -1.64 16 11 C -0.12 -1.79 7.00 -25.35 -0.18 -1.97 16 12 C 0.05 0.87 6.12 -2.20 -0.01 0.86 16 13 N -0.47 -10.59 4.63 -224.94 -1.04 -11.63 16 14 C 0.16 4.00 3.60 -4.97 -0.02 3.98 16 15 C -0.50 -14.99 9.53 -34.44 -0.33 -15.32 16 16 H 0.08 2.67 8.06 -52.49 -0.42 2.24 16 17 C 0.07 2.06 5.47 -17.82 -0.10 1.96 16 18 N -0.90 -28.50 13.96 55.43 0.77 -27.73 16 19 Si 0.87 22.29 27.46 -169.99 -4.67 17.62 16 20 H -0.28 -7.02 7.11 56.52 0.40 -6.62 16 21 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 22 H -0.27 -6.57 6.55 56.52 0.37 -6.20 16 23 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 24 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 25 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 26 H 0.07 0.66 8.07 -51.93 -0.42 0.24 16 27 H 0.08 1.18 7.36 -51.93 -0.38 0.80 16 28 H 0.07 0.63 8.11 -51.93 -0.42 0.21 16 29 H 0.08 0.85 5.72 -51.93 -0.30 0.55 16 30 H 0.06 0.59 6.26 -51.93 -0.33 0.26 16 31 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 32 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 33 H 0.07 1.02 7.85 -51.93 -0.41 0.61 16 34 H 0.07 0.75 7.27 -51.93 -0.38 0.37 16 35 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 36 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 37 H 0.04 0.72 7.75 -51.93 -0.40 0.31 16 38 H 0.09 1.78 8.14 -51.93 -0.42 1.35 16 39 H 0.02 0.56 7.20 -51.93 -0.37 0.18 16 40 H -0.01 -0.24 6.83 -51.93 -0.35 -0.59 16 41 H 0.26 7.77 8.31 -40.82 -0.34 7.43 16 LS Contribution 323.60 15.07 4.88 4.88 Total: -1.00 -35.17 323.60 -7.71 -42.88 By element: Atomic # 1 Polarization: 4.11 SS G_CDS: -7.05 Total: -2.94 kcal Atomic # 6 Polarization: -1.97 SS G_CDS: -0.26 Total: -2.22 kcal Atomic # 7 Polarization: -47.89 SS G_CDS: -0.70 Total: -48.58 kcal Atomic # 8 Polarization: -11.72 SS G_CDS: 0.09 Total: -11.63 kcal Atomic # 14 Polarization: 22.29 SS G_CDS: -4.67 Total: 17.62 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -35.17 -7.71 -42.88 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000067653473.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.124 kcal (2) G-P(sol) polarization free energy of solvation -35.172 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.049 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.709 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.881 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.758 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds