Wall clock time and date at job start Mon Mar 30 2020 04:54:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46500 * 109.46792 * 2 1 4 4 C 1.34776 * 119.99844 * 179.97438 * 3 2 1 5 5 O 1.21285 * 119.99896 * 0.02562 * 4 3 2 6 6 C 1.50693 * 120.00212 * 180.02562 * 4 3 2 7 7 H 1.09001 * 109.47585 * 300.00004 * 6 4 3 8 8 C 1.52998 * 109.47304 * 59.99989 * 6 4 3 9 9 N 1.46499 * 109.47363 * 180.02562 * 6 4 3 10 10 C 1.36939 * 120.00149 * 303.35007 * 9 6 4 11 11 H 1.07992 * 120.00157 * 123.61801 * 10 9 6 12 12 C 1.38815 * 119.99580 * 303.60861 * 10 9 6 13 13 N 1.31620 * 120.00421 * 323.89054 * 12 10 9 14 14 Si 1.86797 * 119.99653 * 143.88749 * 12 10 9 15 15 H 1.48500 * 109.47527 * 0.02562 * 14 12 10 16 16 H 1.48507 * 109.46707 * 120.00367 * 14 12 10 17 17 H 1.48503 * 109.47491 * 240.00104 * 14 12 10 18 18 C 1.46505 * 120.00134 * 123.34681 * 9 6 4 19 19 C 1.54268 * 110.03037 * 241.48121 * 18 9 6 20 20 C 1.54894 * 104.19209 * 217.10060 * 19 18 9 21 21 C 1.54890 * 102.74693 * 37.94513 * 20 19 18 22 22 C 1.53873 * 110.03537 * 124.31225 * 18 9 6 23 23 H 1.09001 * 109.47617 * 59.99656 * 1 2 3 24 24 H 1.09000 * 109.47107 * 179.97438 * 1 2 3 25 25 H 1.09002 * 109.47346 * 299.99782 * 1 2 3 26 26 H 1.08997 * 109.46934 * 240.00416 * 2 1 3 27 27 H 1.08996 * 109.47201 * 120.00138 * 2 1 3 28 28 H 0.97004 * 120.00513 * 0.02562 * 3 2 1 29 29 H 1.09004 * 109.47150 * 52.19222 * 8 6 4 30 30 H 1.08997 * 109.47520 * 292.19554 * 8 6 4 31 31 H 1.09002 * 109.47793 * 172.18595 * 8 6 4 32 32 H 0.97000 * 120.00392 * 185.07637 * 13 12 10 33 33 H 1.09004 * 110.01113 * 2.91622 * 18 9 6 34 34 H 1.08994 * 110.48814 * 335.77790 * 19 18 9 35 35 H 1.09008 * 110.48574 * 98.42739 * 19 18 9 36 36 H 1.08994 * 110.75755 * 279.62735 * 20 19 18 37 37 H 1.08998 * 110.90830 * 156.32995 * 20 19 18 38 38 H 1.09005 * 110.48223 * 203.37714 * 21 20 19 39 39 H 1.08998 * 110.48605 * 80.73143 * 21 20 19 40 40 H 1.08999 * 110.03385 * 238.56982 * 22 18 9 41 41 H 1.09005 * 110.02955 * 359.97438 * 22 18 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 3.3433 1.6276 0.0005 5 8 4.1315 0.7057 0.0005 6 6 3.8456 3.0483 0.0011 7 1 3.4827 3.5625 -0.8888 8 6 3.3352 3.7692 1.2504 9 7 5.3106 3.0483 0.0010 10 6 5.9955 2.3960 0.9913 11 1 6.7139 1.6308 0.7371 12 6 5.7663 2.7184 2.3219 13 7 5.5226 3.9657 2.6643 14 14 5.8037 1.3820 3.6264 15 1 6.0973 0.0742 2.9872 16 1 6.8593 1.6932 4.6236 17 1 4.4848 1.3164 4.3059 18 6 6.0431 3.7463 -1.0586 19 6 6.9065 2.7442 -1.8524 20 6 8.2013 3.5307 -2.1750 21 6 8.4311 4.3550 -0.8839 22 6 7.0124 4.7705 -0.4429 23 1 -0.3634 0.5139 -0.8899 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3634 0.5138 0.8900 26 1 1.8933 -0.5138 -0.8900 27 1 1.8933 -0.5138 0.8899 28 1 1.3879 2.1186 0.0004 29 1 3.5798 3.1809 2.1348 30 1 2.2543 3.8917 1.1831 31 1 3.8081 4.7486 1.3235 32 1 5.4355 4.2035 3.6006 33 1 5.3437 4.2488 -1.7268 34 1 7.1334 1.8695 -1.2429 35 1 6.4005 2.4490 -2.7717 36 1 8.0509 4.1880 -3.0313 37 1 9.0350 2.8514 -2.3530 38 1 9.0376 5.2354 -1.0964 39 1 8.9040 3.7404 -0.1180 40 1 6.7841 5.7700 -0.8129 41 1 6.9375 4.7486 0.6444 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000080215862.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:54:18 Heat of formation + Delta-G solvation = -16.775077 kcal Electronic energy + Delta-G solvation = -20532.404110 eV Core-core repulsion = 17640.917811 eV Total energy + Delta-G solvation = -2891.486299 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 254.174 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -38.92666 -37.34401 -34.81384 -34.13473 -31.42832 -30.47660 -28.88659 -27.60234 -26.29096 -23.93469 -23.15562 -21.52551 -19.80416 -19.35707 -18.88951 -16.66037 -15.81797 -15.18880 -15.02241 -14.83900 -14.55512 -14.19073 -13.49379 -13.31226 -12.77206 -12.56330 -12.28395 -12.25599 -11.70522 -11.56419 -11.46961 -11.11879 -10.99859 -10.84764 -10.71478 -10.43423 -10.23287 -10.09883 -10.07741 -10.01461 -9.95707 -9.54549 -9.32278 -8.59041 -8.34837 -7.89229 -6.32698 -5.69284 -3.32753 3.38157 3.49731 3.64358 3.76542 3.93642 4.56859 5.19574 5.21916 5.25593 5.37747 5.48013 5.62153 5.65641 5.85610 5.86448 5.97522 6.11205 6.17793 6.29671 6.31822 6.40759 6.47032 6.50898 6.65015 6.66208 6.74163 6.81451 6.85549 7.07349 7.14375 7.22033 7.25652 7.38719 7.75178 7.80368 8.05743 8.28941 8.86479 9.18398 9.37548 9.82931 10.57678 11.13749 Molecular weight = 254.17amu Principal moments of inertia in cm(-1) A = 0.017855 B = 0.009139 C = 0.007227 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1567.768778 B = 3063.089324 C = 3873.220594 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.115 3.885 3 N -0.751 5.751 4 C 0.494 3.506 5 O -0.510 6.510 6 C 0.167 3.833 7 H 0.061 0.939 8 C -0.136 4.136 9 N -0.558 5.558 10 C -0.249 4.249 11 H 0.049 0.951 12 C 0.048 3.952 13 N -0.855 5.855 14 Si 0.863 3.137 15 H -0.271 1.271 16 H -0.292 1.292 17 H -0.289 1.289 18 C 0.177 3.823 19 C -0.133 4.133 20 C -0.123 4.123 21 C -0.115 4.115 22 C -0.132 4.132 23 H 0.058 0.942 24 H 0.065 0.935 25 H 0.058 0.942 26 H 0.057 0.943 27 H 0.057 0.943 28 H 0.391 0.609 29 H 0.069 0.931 30 H 0.011 0.989 31 H 0.078 0.922 32 H 0.253 0.747 33 H 0.039 0.961 34 H 0.076 0.924 35 H 0.040 0.960 36 H 0.051 0.949 37 H 0.049 0.951 38 H 0.043 0.957 39 H 0.062 0.938 40 H 0.034 0.966 41 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.365 0.002 -6.187 8.876 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.009 4.009 3 N -0.408 5.408 4 C 0.280 3.720 5 O -0.382 6.382 6 C 0.056 3.944 7 H 0.079 0.921 8 C -0.196 4.196 9 N -0.277 5.277 10 C -0.379 4.379 11 H 0.066 0.934 12 C -0.156 4.156 13 N -0.493 5.493 14 Si 0.692 3.308 15 H -0.196 1.196 16 H -0.219 1.219 17 H -0.216 1.216 18 C 0.071 3.929 19 C -0.173 4.173 20 C -0.161 4.161 21 C -0.153 4.153 22 C -0.171 4.171 23 H 0.077 0.923 24 H 0.084 0.916 25 H 0.077 0.923 26 H 0.076 0.924 27 H 0.076 0.924 28 H 0.224 0.776 29 H 0.088 0.912 30 H 0.029 0.971 31 H 0.097 0.903 32 H 0.063 0.937 33 H 0.058 0.942 34 H 0.095 0.905 35 H 0.059 0.941 36 H 0.070 0.930 37 H 0.068 0.932 38 H 0.062 0.938 39 H 0.080 0.920 40 H 0.053 0.947 41 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -5.827 -0.590 -6.040 8.413 hybrid contribution -0.500 -0.465 0.889 1.121 sum -6.328 -1.055 -5.151 8.227 Atomic orbital electron populations 1.21981 0.95407 1.02383 1.02117 1.21099 0.93248 0.85011 1.01540 1.46467 1.08135 1.07261 1.78924 1.22430 0.80723 0.94127 0.74751 1.90619 1.54852 1.46334 1.46388 1.20490 0.87202 0.89358 0.97384 0.92055 1.22348 0.95039 1.03076 0.99088 1.43523 0.97659 1.59687 1.26857 1.18291 1.22288 1.13537 0.83735 0.93375 1.25271 0.97649 0.94376 0.98254 1.70312 1.47467 1.15296 1.16243 0.86905 0.77103 0.85000 0.81820 1.19552 1.21919 1.21596 1.21078 0.92188 0.90622 0.89032 1.22799 0.95333 1.00325 0.98794 1.22428 0.97925 0.98325 0.97380 1.22234 0.98087 0.98192 0.96796 1.22583 0.93250 0.96258 1.04988 0.92332 0.91566 0.92262 0.92443 0.92434 0.77588 0.91227 0.97056 0.90264 0.93710 0.94234 0.90486 0.94069 0.93022 0.93174 0.93819 0.91966 0.94737 0.87439 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.71 10.03 37.16 0.37 -1.33 16 2 C 0.12 1.73 6.39 -4.04 -0.03 1.71 16 3 N -0.75 -12.71 5.46 -60.30 -0.33 -13.04 16 4 C 0.49 10.77 7.02 -10.99 -0.08 10.69 16 5 O -0.51 -13.24 15.09 5.55 0.08 -13.16 16 6 C 0.17 3.61 3.18 -69.09 -0.22 3.39 16 7 H 0.06 1.18 7.58 -51.93 -0.39 0.79 16 8 C -0.14 -2.93 7.49 37.16 0.28 -2.66 16 9 N -0.56 -13.38 2.14 -158.19 -0.34 -13.72 16 10 C -0.25 -6.71 5.55 -15.06 -0.08 -6.79 16 11 H 0.05 1.43 7.09 -52.49 -0.37 1.06 16 12 C 0.05 1.29 3.42 -17.43 -0.06 1.23 16 13 N -0.86 -22.75 9.96 55.49 0.55 -22.19 16 14 Si 0.86 22.03 29.66 -169.99 -5.04 16.99 16 15 H -0.27 -7.23 7.11 56.52 0.40 -6.83 16 16 H -0.29 -7.38 7.11 56.52 0.40 -6.98 16 17 H -0.29 -7.42 7.11 56.52 0.40 -7.02 16 18 C 0.18 3.79 3.44 -66.81 -0.23 3.56 16 19 C -0.13 -2.69 6.42 -25.07 -0.16 -2.85 16 20 C -0.12 -2.13 6.91 -24.74 -0.17 -2.30 16 21 C -0.12 -2.15 6.83 -25.07 -0.17 -2.32 16 22 C -0.13 -2.77 6.25 -25.62 -0.16 -2.93 16 23 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 24 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 25 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 26 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 27 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 28 H 0.39 5.49 8.05 -40.82 -0.33 5.16 16 29 H 0.07 1.72 5.55 -51.93 -0.29 1.43 16 30 H 0.01 0.19 7.79 -51.93 -0.40 -0.21 16 31 H 0.08 1.84 7.28 -51.93 -0.38 1.47 16 32 H 0.25 6.59 8.32 -40.82 -0.34 6.25 16 33 H 0.04 0.79 7.59 -51.93 -0.39 0.40 16 34 H 0.08 1.78 6.62 -51.93 -0.34 1.44 16 35 H 0.04 0.78 8.14 -51.92 -0.42 0.35 16 36 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 37 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 38 H 0.04 0.72 8.14 -51.93 -0.42 0.30 16 39 H 0.06 1.25 8.14 -51.93 -0.42 0.82 16 40 H 0.03 0.66 8.14 -51.93 -0.42 0.24 16 41 H 0.11 2.67 6.52 -51.93 -0.34 2.33 16 LS Contribution 318.51 15.07 4.80 4.80 Total: -1.00 -29.63 318.51 -8.01 -37.64 By element: Atomic # 1 Polarization: 10.31 SS G_CDS: -7.03 Total: 3.28 kcal Atomic # 6 Polarization: 0.11 SS G_CDS: -0.71 Total: -0.60 kcal Atomic # 7 Polarization: -48.84 SS G_CDS: -0.11 Total: -48.95 kcal Atomic # 8 Polarization: -13.24 SS G_CDS: 0.08 Total: -13.16 kcal Atomic # 14 Polarization: 22.03 SS G_CDS: -5.04 Total: 16.99 kcal Total LS contribution 4.80 Total: 4.80 kcal Total: -29.63 -8.01 -37.64 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000080215862.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.867 kcal (2) G-P(sol) polarization free energy of solvation -29.633 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.766 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.009 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.642 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.775 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds