Wall clock time and date at job start Mon Mar 30 2020 04:54:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46500 * 109.46792 * 2 1 4 4 C 1.34776 * 119.99844 * 179.97438 * 3 2 1 5 5 O 1.21285 * 119.99896 * 0.02562 * 4 3 2 6 6 C 1.50693 * 120.00212 * 180.02562 * 4 3 2 7 7 H 1.09001 * 109.47585 * 300.00004 * 6 4 3 8 8 C 1.52998 * 109.47304 * 59.99989 * 6 4 3 9 9 N 1.46499 * 109.47363 * 180.02562 * 6 4 3 10 10 C 1.36939 * 120.00149 * 303.35007 * 9 6 4 11 11 H 1.07992 * 120.00157 * 123.61801 * 10 9 6 12 12 C 1.38815 * 119.99580 * 303.60861 * 10 9 6 13 13 N 1.31620 * 120.00421 * 323.89054 * 12 10 9 14 14 Si 1.86797 * 119.99653 * 143.88749 * 12 10 9 15 15 H 1.48500 * 109.47527 * 0.02562 * 14 12 10 16 16 H 1.48507 * 109.46707 * 120.00367 * 14 12 10 17 17 H 1.48503 * 109.47491 * 240.00104 * 14 12 10 18 18 C 1.46505 * 120.00134 * 123.34681 * 9 6 4 19 19 C 1.54268 * 110.03037 * 241.48121 * 18 9 6 20 20 C 1.54894 * 104.19209 * 217.10060 * 19 18 9 21 21 C 1.54890 * 102.74693 * 37.94513 * 20 19 18 22 22 C 1.53873 * 110.03537 * 124.31225 * 18 9 6 23 23 H 1.09001 * 109.47617 * 59.99656 * 1 2 3 24 24 H 1.09000 * 109.47107 * 179.97438 * 1 2 3 25 25 H 1.09002 * 109.47346 * 299.99782 * 1 2 3 26 26 H 1.08997 * 109.46934 * 240.00416 * 2 1 3 27 27 H 1.08996 * 109.47201 * 120.00138 * 2 1 3 28 28 H 0.97004 * 120.00513 * 0.02562 * 3 2 1 29 29 H 1.09004 * 109.47150 * 52.19222 * 8 6 4 30 30 H 1.08997 * 109.47520 * 292.19554 * 8 6 4 31 31 H 1.09002 * 109.47793 * 172.18595 * 8 6 4 32 32 H 0.97000 * 120.00392 * 185.07637 * 13 12 10 33 33 H 1.09004 * 110.01113 * 2.91622 * 18 9 6 34 34 H 1.08994 * 110.48814 * 335.77790 * 19 18 9 35 35 H 1.09008 * 110.48574 * 98.42739 * 19 18 9 36 36 H 1.08994 * 110.75755 * 279.62735 * 20 19 18 37 37 H 1.08998 * 110.90830 * 156.32995 * 20 19 18 38 38 H 1.09005 * 110.48223 * 203.37714 * 21 20 19 39 39 H 1.08998 * 110.48605 * 80.73143 * 21 20 19 40 40 H 1.08999 * 110.03385 * 238.56982 * 22 18 9 41 41 H 1.09005 * 110.02955 * 359.97438 * 22 18 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 3.3433 1.6276 0.0005 5 8 4.1315 0.7057 0.0005 6 6 3.8456 3.0483 0.0011 7 1 3.4827 3.5625 -0.8888 8 6 3.3352 3.7692 1.2504 9 7 5.3106 3.0483 0.0010 10 6 5.9955 2.3960 0.9913 11 1 6.7139 1.6308 0.7371 12 6 5.7663 2.7184 2.3219 13 7 5.5226 3.9657 2.6643 14 14 5.8037 1.3820 3.6264 15 1 6.0973 0.0742 2.9872 16 1 6.8593 1.6932 4.6236 17 1 4.4848 1.3164 4.3059 18 6 6.0431 3.7463 -1.0586 19 6 6.9065 2.7442 -1.8524 20 6 8.2013 3.5307 -2.1750 21 6 8.4311 4.3550 -0.8839 22 6 7.0124 4.7705 -0.4429 23 1 -0.3634 0.5139 -0.8899 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3634 0.5138 0.8900 26 1 1.8933 -0.5138 -0.8900 27 1 1.8933 -0.5138 0.8899 28 1 1.3879 2.1186 0.0004 29 1 3.5798 3.1809 2.1348 30 1 2.2543 3.8917 1.1831 31 1 3.8081 4.7486 1.3235 32 1 5.4355 4.2035 3.6006 33 1 5.3437 4.2488 -1.7268 34 1 7.1334 1.8695 -1.2429 35 1 6.4005 2.4490 -2.7717 36 1 8.0509 4.1880 -3.0313 37 1 9.0350 2.8514 -2.3530 38 1 9.0376 5.2354 -1.0964 39 1 8.9040 3.7404 -0.1180 40 1 6.7841 5.7700 -0.8129 41 1 6.9375 4.7486 0.6444 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000080215862.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:54:18 Heat of formation + Delta-G solvation = -35.361834 kcal Electronic energy + Delta-G solvation = -20533.210092 eV Core-core repulsion = 17640.917811 eV Total energy + Delta-G solvation = -2892.292281 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 254.174 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.62504 -38.98325 -36.36516 -35.84103 -33.37512 -32.00008 -30.33998 -29.19869 -28.07939 -25.74780 -24.63044 -23.00154 -21.36963 -21.01406 -20.61425 -18.45519 -17.53698 -16.87488 -16.64476 -16.39744 -16.22032 -15.91830 -15.09533 -14.85901 -14.45915 -14.38811 -13.90324 -13.37801 -13.33406 -13.18785 -12.95345 -12.76500 -12.64570 -12.59003 -12.35068 -12.25083 -12.06309 -11.90508 -11.71340 -11.63845 -11.60159 -11.18582 -11.02702 -10.36646 -9.92577 -9.85881 -8.32145 -7.66613 -5.38749 1.28562 1.36847 1.52720 2.05667 2.43845 2.55836 3.14479 3.64097 4.08024 4.10736 4.15388 4.23928 4.34122 4.39528 4.47896 4.54308 4.76340 4.78865 4.86769 4.98369 4.99491 5.02644 5.05945 5.08404 5.12068 5.25694 5.30293 5.31025 5.41347 5.45954 5.70436 5.72093 5.74514 5.88709 5.99930 6.04566 6.74512 6.83892 7.31431 7.66536 7.90408 8.57419 9.05256 Molecular weight = 254.17amu Principal moments of inertia in cm(-1) A = 0.017855 B = 0.009139 C = 0.007227 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1567.768778 B = 3063.089324 C = 3873.220594 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.111 3.889 3 N -0.733 5.733 4 C 0.491 3.509 5 O -0.563 6.563 6 C 0.159 3.841 7 H 0.093 0.907 8 C -0.121 4.121 9 N -0.570 5.570 10 C -0.241 4.241 11 H 0.008 0.992 12 C 0.028 3.972 13 N -0.859 5.859 14 Si 0.893 3.107 15 H -0.295 1.295 16 H -0.285 1.285 17 H -0.288 1.288 18 C 0.167 3.833 19 C -0.130 4.130 20 C -0.110 4.110 21 C -0.112 4.112 22 C -0.128 4.128 23 H 0.075 0.925 24 H 0.084 0.916 25 H 0.065 0.935 26 H 0.050 0.950 27 H 0.034 0.966 28 H 0.409 0.591 29 H 0.034 0.966 30 H 0.051 0.949 31 H 0.060 0.940 32 H 0.253 0.747 33 H 0.061 0.939 34 H 0.035 0.965 35 H 0.053 0.947 36 H 0.081 0.919 37 H 0.061 0.939 38 H 0.071 0.929 39 H 0.036 0.964 40 H 0.053 0.947 41 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.999 1.198 -7.757 11.207 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.013 4.013 3 N -0.389 5.389 4 C 0.277 3.723 5 O -0.440 6.440 6 C 0.048 3.952 7 H 0.111 0.889 8 C -0.180 4.180 9 N -0.290 5.290 10 C -0.371 4.371 11 H 0.026 0.974 12 C -0.175 4.175 13 N -0.498 5.498 14 Si 0.722 3.278 15 H -0.222 1.222 16 H -0.212 1.212 17 H -0.214 1.214 18 C 0.062 3.938 19 C -0.170 4.170 20 C -0.148 4.148 21 C -0.150 4.150 22 C -0.168 4.168 23 H 0.094 0.906 24 H 0.102 0.898 25 H 0.085 0.915 26 H 0.069 0.931 27 H 0.053 0.947 28 H 0.245 0.755 29 H 0.053 0.947 30 H 0.070 0.930 31 H 0.079 0.921 32 H 0.062 0.938 33 H 0.079 0.921 34 H 0.054 0.946 35 H 0.072 0.928 36 H 0.100 0.900 37 H 0.079 0.921 38 H 0.090 0.910 39 H 0.055 0.945 40 H 0.072 0.928 41 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -7.518 0.635 -7.607 10.714 hybrid contribution -0.055 -0.881 1.325 1.592 sum -7.574 -0.246 -6.282 9.843 Atomic orbital electron populations 1.21912 0.91334 1.04028 1.03302 1.21256 0.96490 0.83373 1.00172 1.46240 1.06878 1.08974 1.76808 1.22423 0.81946 0.93642 0.74267 1.90606 1.56596 1.47577 1.49178 1.20657 0.86023 0.89768 0.98746 0.88907 1.22097 0.97429 1.01110 0.97389 1.43640 0.98767 1.59752 1.26815 1.17861 1.21980 1.12458 0.84823 0.97421 1.25400 0.98392 0.95041 0.98629 1.70330 1.48167 1.15128 1.16126 0.86466 0.77124 0.83069 0.81095 1.22157 1.21211 1.21417 1.21302 0.92753 0.90976 0.88792 1.22696 0.97014 0.98887 0.98358 1.22378 0.96594 0.98262 0.97520 1.22190 0.96954 0.99086 0.96797 1.22468 0.94711 0.97267 1.02305 0.90574 0.89766 0.91550 0.93110 0.94704 0.75478 0.94735 0.92994 0.92093 0.93755 0.92093 0.94647 0.92793 0.90011 0.92056 0.91024 0.94522 0.92795 0.91593 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.67 10.03 71.98 0.72 -1.94 16 2 C 0.11 3.20 6.39 86.38 0.55 3.75 16 3 N -0.73 -23.54 5.46 -463.07 -2.53 -26.07 16 4 C 0.49 21.22 7.02 87.65 0.62 21.84 16 5 O -0.56 -30.05 15.09 -3.05 -0.05 -30.10 16 6 C 0.16 6.70 3.18 44.24 0.14 6.84 16 7 H 0.09 3.31 7.58 -2.39 -0.02 3.29 16 8 C -0.12 -5.05 7.49 71.98 0.54 -4.51 16 9 N -0.57 -27.55 2.14 -654.39 -1.40 -28.95 16 10 C -0.24 -13.46 5.55 84.03 0.47 -12.99 16 11 H 0.01 0.52 7.09 -2.91 -0.02 0.50 16 12 C 0.03 1.54 3.42 84.86 0.29 1.83 16 13 N -0.86 -46.41 9.96 21.65 0.22 -46.19 16 14 Si 0.89 46.52 29.66 68.60 2.03 48.56 16 15 H -0.30 -16.46 7.11 99.48 0.71 -15.76 16 16 H -0.29 -14.42 7.11 99.48 0.71 -13.72 16 17 H -0.29 -14.78 7.11 99.48 0.71 -14.07 16 18 C 0.17 7.02 3.44 45.71 0.16 7.18 16 19 C -0.13 -5.19 6.42 31.67 0.20 -4.98 16 20 C -0.11 -3.57 6.91 31.89 0.22 -3.35 16 21 C -0.11 -4.06 6.83 31.67 0.22 -3.85 16 22 C -0.13 -5.29 6.25 31.32 0.20 -5.09 16 23 H 0.08 1.14 8.14 -2.39 -0.02 1.12 16 24 H 0.08 1.26 8.14 -2.39 -0.02 1.24 16 25 H 0.07 1.13 8.14 -2.39 -0.02 1.11 16 26 H 0.05 1.54 8.14 -2.39 -0.02 1.52 16 27 H 0.03 1.16 8.14 -2.39 -0.02 1.14 16 28 H 0.41 10.17 8.05 -92.71 -0.75 9.42 16 29 H 0.03 1.68 5.55 -2.39 -0.01 1.66 16 30 H 0.05 1.69 7.79 -2.39 -0.02 1.67 16 31 H 0.06 2.77 7.28 -2.39 -0.02 2.75 16 32 H 0.25 13.31 8.32 -92.71 -0.77 12.54 16 33 H 0.06 2.28 7.59 -2.38 -0.02 2.26 16 34 H 0.03 1.69 6.62 -2.39 -0.02 1.68 16 35 H 0.05 1.97 8.14 -2.38 -0.02 1.95 16 36 H 0.08 2.22 8.14 -2.39 -0.02 2.20 16 37 H 0.06 1.87 8.14 -2.39 -0.02 1.85 16 38 H 0.07 2.18 8.14 -2.38 -0.02 2.16 16 39 H 0.04 1.48 8.14 -2.39 -0.02 1.46 16 40 H 0.05 1.97 8.14 -2.39 -0.02 1.95 16 41 H 0.07 3.31 6.52 -2.38 -0.02 3.30 16 Total: -1.00 -67.66 318.51 2.85 -64.81 By element: Atomic # 1 Polarization: 12.99 SS G_CDS: 0.25 Total: 13.24 kcal Atomic # 6 Polarization: 0.39 SS G_CDS: 4.32 Total: 4.71 kcal Atomic # 7 Polarization: -97.51 SS G_CDS: -3.71 Total: -101.22 kcal Atomic # 8 Polarization: -30.05 SS G_CDS: -0.05 Total: -30.10 kcal Atomic # 14 Polarization: 46.52 SS G_CDS: 2.03 Total: 48.56 kcal Total: -67.66 2.85 -64.81 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000080215862.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.446 kcal (2) G-P(sol) polarization free energy of solvation -67.655 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.209 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.847 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.808 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.362 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds