Wall clock time and date at job start Mon Mar 30 2020 05:06:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46899 * 1 3 3 C 1.46899 * 110.99874 * 2 1 4 4 C 1.50699 * 109.47467 * 66.04214 * 3 2 1 5 5 O 1.21443 * 119.99704 * 359.97438 * 4 3 2 6 6 C 1.41025 * 120.00434 * 179.97438 * 4 3 2 7 7 H 1.08000 * 119.99434 * 0.02562 * 6 4 3 8 8 C 1.40453 * 120.00466 * 179.97438 * 6 4 3 9 9 N 1.30532 * 119.99810 * 0.02562 * 8 6 4 10 10 Si 1.86794 * 120.00528 * 179.97438 * 8 6 4 11 11 H 1.48507 * 109.46627 * 0.02562 * 10 8 6 12 12 H 1.48497 * 109.47188 * 120.00094 * 10 8 6 13 13 H 1.48500 * 109.47667 * 240.00513 * 10 8 6 14 14 C 1.46893 * 111.00383 * 236.04161 * 2 1 3 15 15 C 1.53004 * 109.47344 * 287.81693 * 14 2 1 16 16 H 1.09001 * 109.53149 * 56.27153 * 15 14 2 17 17 C 1.53119 * 109.50125 * 296.17433 * 15 14 2 18 18 C 1.53117 * 109.16024 * 182.40495 * 17 15 14 19 19 C 1.53040 * 109.28063 * 57.65350 * 18 17 15 20 20 N 1.46845 * 109.52154 * 300.82080 * 19 18 17 21 21 C 1.46902 * 110.99937 * 185.83684 * 20 19 18 22 22 C 1.46854 * 111.19632 * 61.74436 * 20 19 18 23 23 H 1.09000 * 109.47054 * 191.77388 * 1 2 3 24 24 H 1.08998 * 109.47689 * 311.77347 * 1 2 3 25 25 H 1.09003 * 109.47168 * 71.77480 * 1 2 3 26 26 H 1.09001 * 109.47083 * 186.04618 * 3 2 1 27 27 H 1.09005 * 109.47030 * 306.04421 * 3 2 1 28 28 H 0.96999 * 120.00018 * 180.02562 * 9 8 6 29 29 H 1.08995 * 109.47512 * 167.81436 * 14 2 1 30 30 H 1.09004 * 109.47131 * 47.81677 * 14 2 1 31 31 H 1.09006 * 109.52156 * 62.50027 * 17 15 14 32 32 H 1.08994 * 109.52253 * 302.31156 * 17 15 14 33 33 H 1.08997 * 109.50312 * 177.59860 * 18 17 15 34 34 H 1.09001 * 109.50313 * 297.71130 * 18 17 15 35 35 H 1.08998 * 109.45624 * 60.83715 * 19 18 17 36 36 H 1.08996 * 109.46111 * 180.80653 * 19 18 17 37 37 H 1.08993 * 109.47098 * 63.95456 * 21 20 19 38 38 H 1.08997 * 109.47280 * 183.95985 * 21 20 19 39 39 H 1.08999 * 109.46910 * 303.95712 * 21 20 19 40 40 H 1.08992 * 109.46571 * 58.26948 * 22 20 19 41 41 H 1.08997 * 109.46116 * 178.25418 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.6368 2.0472 1.2984 5 8 1.0037 1.4449 2.1417 6 6 2.0364 3.3790 1.5341 7 1 2.5991 3.9147 0.7839 8 6 1.7018 4.0090 2.7440 9 7 1.0213 3.3617 3.6505 10 14 2.2317 5.7727 3.0565 11 1 2.9862 6.2784 1.8816 12 1 1.0312 6.6190 3.2749 13 1 3.0987 5.8231 4.2611 14 6 1.9955 -0.7660 -1.1374 15 6 1.7663 -2.2595 -0.8965 16 1 0.7052 -2.4426 -0.7267 17 6 2.5652 -2.7078 0.3304 18 6 2.3781 -4.2145 0.5288 19 6 2.8263 -4.9503 -0.7361 20 7 2.0318 -4.4868 -1.8808 21 6 2.3386 -5.2692 -3.0857 22 6 2.2322 -3.0518 -2.1201 23 1 -0.3633 -1.0060 0.2097 24 1 -0.3634 0.6846 0.7664 25 1 -0.3634 0.3214 -0.9761 26 1 3.0797 1.3444 -0.1082 27 1 1.5610 1.9273 -0.8310 28 1 0.7898 3.7969 4.4859 29 1 3.0634 -0.5745 -1.2414 30 1 1.4815 -0.4620 -2.0493 31 1 2.2068 -2.1770 1.2124 32 1 3.6219 -2.4891 0.1768 33 1 2.9784 -4.5474 1.3755 34 1 1.3267 -4.4285 0.7211 35 1 3.8812 -4.7469 -0.9199 36 1 2.6809 -6.0223 -0.6034 37 1 2.0454 -6.3073 -2.9292 38 1 1.7894 -4.8605 -3.9339 39 1 3.4085 -5.2204 -3.2880 40 1 3.2899 -2.8574 -2.2974 41 1 1.6552 -2.7450 -2.9924 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259320541.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:06:41 Heat of formation + Delta-G solvation = -60.320786 kcal Electronic energy + Delta-G solvation = -19394.562788 eV Core-core repulsion = 16501.188206 eV Total energy + Delta-G solvation = -2893.374583 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 254.174 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.35320 -39.23333 -37.24988 -34.73666 -34.23403 -32.40577 -30.15285 -27.96145 -27.69257 -27.26285 -24.20217 -23.73875 -21.90515 -21.02366 -20.51600 -18.33552 -17.19416 -16.79420 -16.48807 -16.27998 -15.75371 -15.66219 -15.21222 -15.11874 -14.87499 -14.54400 -14.06953 -13.92824 -13.70567 -13.26052 -13.13996 -12.99172 -12.91930 -12.65417 -12.50689 -12.38084 -12.26762 -12.04685 -11.99449 -11.87128 -11.48255 -11.22301 -11.15840 -10.92008 -9.47408 -9.26277 -8.99155 -8.19491 -7.02616 1.35356 1.38967 1.56314 2.23193 2.25752 2.88689 3.23813 3.43726 3.82793 3.94506 3.98941 4.20441 4.31109 4.40421 4.44761 4.49203 4.55729 4.58459 4.60300 4.66135 4.69245 4.77922 4.82437 4.85552 4.90340 4.95409 5.02797 5.04890 5.14045 5.18158 5.23721 5.28754 5.51759 5.52892 6.01151 6.10945 6.16297 6.18393 6.40053 6.78223 6.91688 8.36749 8.59450 Molecular weight = 254.17amu Principal moments of inertia in cm(-1) A = 0.048777 B = 0.004031 C = 0.003939 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 573.904061 B = 6945.120568 C = 7107.296056 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.040 3.960 2 N -0.535 5.535 3 C 0.028 3.972 4 C 0.345 3.655 5 O -0.567 6.567 6 C -0.570 4.570 7 H 0.082 0.918 8 C 0.028 3.972 9 N -0.791 5.791 10 Si 0.992 3.008 11 H -0.248 1.248 12 H -0.266 1.266 13 H -0.266 1.266 14 C 0.062 3.938 15 C -0.069 4.069 16 H 0.063 0.937 17 C -0.104 4.104 18 C -0.114 4.114 19 C 0.060 3.940 20 N -0.559 5.559 21 C 0.026 3.974 22 C 0.069 3.931 23 H 0.065 0.935 24 H 0.049 0.951 25 H 0.023 0.977 26 H 0.084 0.916 27 H 0.041 0.959 28 H 0.279 0.721 29 H 0.072 0.928 30 H 0.038 0.962 31 H 0.046 0.954 32 H 0.052 0.948 33 H 0.073 0.927 34 H 0.059 0.941 35 H 0.033 0.967 36 H 0.086 0.914 37 H 0.077 0.923 38 H 0.073 0.927 39 H 0.028 0.972 40 H 0.036 0.964 41 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.295 -11.709 -11.759 17.141 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 N -0.259 5.259 3 C -0.100 4.100 4 C 0.240 3.760 5 O -0.458 6.458 6 C -0.602 4.602 7 H 0.100 0.900 8 C -0.190 4.190 9 N -0.420 5.420 10 Si 0.811 3.189 11 H -0.171 1.171 12 H -0.191 1.191 13 H -0.191 1.191 14 C -0.066 4.066 15 C -0.088 4.088 16 H 0.082 0.918 17 C -0.142 4.142 18 C -0.152 4.152 19 C -0.067 4.067 20 N -0.283 5.283 21 C -0.122 4.122 22 C -0.059 4.059 23 H 0.084 0.916 24 H 0.067 0.933 25 H 0.042 0.958 26 H 0.103 0.897 27 H 0.059 0.941 28 H 0.089 0.911 29 H 0.090 0.910 30 H 0.056 0.944 31 H 0.065 0.935 32 H 0.071 0.929 33 H 0.092 0.908 34 H 0.078 0.922 35 H 0.052 0.948 36 H 0.104 0.896 37 H 0.096 0.904 38 H 0.092 0.908 39 H 0.047 0.953 40 H 0.054 0.946 41 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 3.578 -12.374 -10.695 16.743 hybrid contribution 0.653 1.414 -0.560 1.655 sum 4.230 -10.960 -11.255 16.270 Atomic orbital electron populations 1.22254 0.87708 1.01751 0.99106 1.61598 1.08101 1.13288 1.42924 1.22358 1.00051 0.88727 0.98894 1.20152 0.80664 0.88328 0.86824 1.90344 1.40414 1.67418 1.47601 1.21316 1.35348 1.00379 1.03148 0.89989 1.27161 0.92463 1.04659 0.94731 1.70104 1.27045 1.39059 1.05841 0.85064 0.78945 0.75451 0.79462 1.17132 1.19084 1.19083 1.22200 0.99892 0.93609 0.90916 1.21028 1.00184 0.92576 0.95061 0.91819 1.21416 0.99076 0.95701 0.97979 1.21581 1.01746 0.94533 0.97357 1.22091 0.94570 0.99807 0.90280 1.61879 1.57014 1.03443 1.05986 1.22393 0.99253 0.98777 0.91735 1.22007 0.99150 0.87433 0.97348 0.91598 0.93263 0.95817 0.89747 0.94096 0.91071 0.91000 0.94371 0.93493 0.92949 0.90814 0.92175 0.94833 0.89582 0.90431 0.90840 0.95314 0.94624 0.90172 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.65 8.97 127.69 1.15 2.80 16 2 N -0.54 -22.17 3.91 -927.06 -3.62 -25.79 16 3 C 0.03 1.29 5.31 85.56 0.45 1.74 16 4 C 0.34 19.78 6.51 26.37 0.17 19.95 16 5 O -0.57 -36.88 12.94 -3.54 -0.05 -36.93 16 6 C -0.57 -32.12 9.22 23.49 0.22 -31.91 16 7 H 0.08 4.20 7.85 -2.91 -0.02 4.18 16 8 C 0.03 1.56 5.50 85.43 0.47 2.03 16 9 N -0.79 -47.20 11.72 21.91 0.26 -46.95 16 10 Si 0.99 40.04 29.56 68.60 2.03 42.06 16 11 H -0.25 -9.37 7.11 99.48 0.71 -8.67 16 12 H -0.27 -10.30 7.11 99.48 0.71 -9.59 16 13 H -0.27 -10.32 7.11 99.48 0.71 -9.61 16 14 C 0.06 1.95 4.38 86.31 0.38 2.33 16 15 C -0.07 -1.96 2.35 -10.74 -0.03 -1.99 16 16 H 0.06 1.99 6.81 -2.39 -0.02 1.98 16 17 C -0.10 -3.11 5.13 30.67 0.16 -2.95 16 18 C -0.11 -2.80 6.09 30.65 0.19 -2.61 16 19 C 0.06 1.24 5.46 86.33 0.47 1.71 16 20 N -0.56 -12.07 4.91 -922.60 -4.53 -16.60 16 21 C 0.03 0.42 9.62 127.69 1.23 1.65 16 22 C 0.07 1.57 4.75 86.32 0.41 1.98 16 23 H 0.07 2.51 6.97 -2.39 -0.02 2.49 16 24 H 0.05 2.48 5.78 -2.39 -0.01 2.46 16 25 H 0.02 0.87 7.95 -2.39 -0.02 0.85 16 26 H 0.08 3.54 7.86 -2.39 -0.02 3.52 16 27 H 0.04 1.74 8.12 -2.38 -0.02 1.72 16 28 H 0.28 14.93 8.29 -92.71 -0.77 14.16 16 29 H 0.07 2.16 7.80 -2.39 -0.02 2.14 16 30 H 0.04 1.11 7.92 -2.38 -0.02 1.09 16 31 H 0.05 1.75 7.80 -2.38 -0.02 1.73 16 32 H 0.05 1.53 8.14 -2.39 -0.02 1.51 16 33 H 0.07 1.64 8.14 -2.39 -0.02 1.62 16 34 H 0.06 1.57 8.14 -2.39 -0.02 1.55 16 35 H 0.03 0.68 8.14 -2.39 -0.02 0.66 16 36 H 0.09 1.50 8.12 -2.39 -0.02 1.48 16 37 H 0.08 1.07 8.14 -2.39 -0.02 1.05 16 38 H 0.07 1.07 8.02 -2.39 -0.02 1.05 16 39 H 0.03 0.43 8.14 -2.39 -0.02 0.41 16 40 H 0.04 0.79 8.14 -2.39 -0.02 0.77 16 41 H 0.08 1.68 8.04 -2.39 -0.02 1.66 16 Total: -1.00 -69.57 321.99 0.33 -69.25 By element: Atomic # 1 Polarization: 19.24 SS G_CDS: 0.98 Total: 20.22 kcal Atomic # 6 Polarization: -10.53 SS G_CDS: 5.27 Total: -5.27 kcal Atomic # 7 Polarization: -81.44 SS G_CDS: -7.90 Total: -89.34 kcal Atomic # 8 Polarization: -36.88 SS G_CDS: -0.05 Total: -36.93 kcal Atomic # 14 Polarization: 40.04 SS G_CDS: 2.03 Total: 42.06 kcal Total: -69.57 0.33 -69.25 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259320541.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.927 kcal (2) G-P(sol) polarization free energy of solvation -69.575 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.648 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.327 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.248 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.321 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds