Wall clock time and date at job start Mon Mar 30 2020 05:21:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46905 * 1 3 3 C 1.46960 * 110.99528 * 2 1 4 4 C 1.53054 * 109.36182 * 176.81595 * 3 2 1 5 5 N 1.46960 * 109.36602 * 58.39998 * 4 3 2 6 6 C 1.46894 * 110.99648 * 176.81358 * 5 4 3 7 7 C 1.53171 * 109.54860 * 60.25285 * 6 5 4 8 8 C 1.53086 * 109.16723 * 183.15027 * 7 6 5 9 9 O 1.42903 * 109.41435 * 57.60638 * 8 7 6 10 10 C 1.42901 * 114.09653 * 298.83974 * 9 8 7 11 11 C 1.53091 * 109.41154 * 61.16340 * 10 9 8 12 12 C 1.46956 * 110.87810 * 300.68200 * 5 4 3 13 13 H 1.09000 * 109.48806 * 299.35140 * 12 5 4 14 14 C 1.50698 * 109.48735 * 179.28744 * 12 5 4 15 15 H 1.07997 * 120.00013 * 354.71132 * 14 12 5 16 16 C 1.37878 * 120.00064 * 174.70800 * 14 12 5 17 17 N 1.31516 * 120.00027 * 180.02562 * 16 14 12 18 18 Si 1.86793 * 120.00058 * 359.97438 * 16 14 12 19 19 H 1.48505 * 109.47211 * 90.00142 * 18 16 14 20 20 H 1.48499 * 109.47459 * 209.99909 * 18 16 14 21 21 H 1.48500 * 109.47245 * 330.00208 * 18 16 14 22 22 C 1.46953 * 110.99993 * 236.20514 * 2 1 3 23 23 H 1.08999 * 109.47541 * 56.04330 * 1 2 3 24 24 H 1.09006 * 109.46870 * 176.04872 * 1 2 3 25 25 H 1.09002 * 109.47104 * 296.04181 * 1 2 3 26 26 H 1.08994 * 109.49066 * 56.84851 * 3 2 1 27 27 H 1.09000 * 109.48930 * 296.78073 * 3 2 1 28 28 H 1.09003 * 109.48820 * 298.43373 * 4 3 2 29 29 H 1.08996 * 109.48957 * 178.37076 * 4 3 2 30 30 H 1.09011 * 109.53774 * 180.51885 * 6 5 4 31 31 H 1.09001 * 109.52370 * 303.06107 * 7 6 5 32 32 H 1.09006 * 109.52596 * 63.24298 * 7 6 5 33 33 H 1.09004 * 109.47899 * 297.62023 * 8 7 6 34 34 H 1.08998 * 109.48473 * 177.59152 * 8 7 6 35 35 H 1.08995 * 109.48210 * 301.17746 * 10 9 8 36 36 H 1.09001 * 109.47589 * 181.14020 * 10 9 8 37 37 H 1.09004 * 109.52421 * 182.48147 * 11 10 9 38 38 H 1.08999 * 109.57680 * 62.32629 * 11 10 9 39 39 H 0.96999 * 120.00074 * 180.02562 * 17 16 14 40 40 H 1.09010 * 109.48780 * 303.15547 * 22 2 1 41 41 H 1.09000 * 109.49431 * 63.21359 * 22 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9956 1.3720 0.0000 4 6 3.5234 1.3292 0.0802 5 7 4.0501 0.5660 -1.0599 6 6 5.5190 0.5661 -1.0599 7 6 6.0316 -0.0769 0.2324 8 6 7.5603 -0.0014 0.2593 9 8 7.9705 1.3632 0.1521 10 6 7.5602 2.0024 -1.0583 11 6 6.0314 2.0075 -1.1381 12 6 3.5234 -0.8059 -1.0599 13 1 3.8254 -1.3113 -0.1426 14 6 4.0686 -1.5537 -2.2493 15 1 4.6698 -1.0371 -2.9827 16 6 3.7999 -2.8975 -2.4011 17 7 4.2760 -3.5502 -3.4388 18 14 2.7607 -3.7914 -1.1321 19 1 1.3296 -3.7152 -1.5216 20 1 3.1796 -5.2143 -1.0626 21 1 2.9464 -3.1552 0.1968 22 6 1.9957 -0.7631 -1.1401 23 1 -0.3634 0.5740 -0.8524 24 1 -0.3633 -1.0253 -0.0708 25 1 -0.3633 0.4512 0.9233 26 1 1.6013 1.9129 0.8602 27 1 1.6936 1.8774 -0.9173 28 1 3.8254 0.8480 1.0105 29 1 3.9177 2.3449 0.0512 30 1 5.8836 0.0024 -1.9188 31 1 5.6253 0.4575 1.0912 32 1 5.7177 -1.1201 0.2696 33 1 7.9671 -0.5701 -0.5769 34 1 7.9285 -0.4191 1.1964 35 1 7.9670 1.4600 -1.9117 36 1 7.9283 3.0283 -1.0704 37 1 5.7173 2.4551 -2.0811 38 1 5.6243 2.5844 -0.3077 39 1 4.0867 -4.4955 -3.5458 40 1 1.6013 -1.7789 -1.1111 41 1 1.6937 -0.2820 -2.0704 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259799733.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:21:03 Heat of formation + Delta-G solvation = -25.047421 kcal Electronic energy + Delta-G solvation = -20765.523513 eV Core-core repulsion = 17873.678499 eV Total energy + Delta-G solvation = -2891.845015 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 254.174 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -39.67790 -38.02799 -35.28609 -33.03382 -31.29125 -30.77700 -30.30780 -27.41057 -25.34047 -23.94041 -23.40693 -22.72160 -21.23847 -19.87647 -18.35903 -16.87722 -16.26054 -15.73223 -15.33769 -14.70964 -14.56538 -14.24072 -14.12705 -13.97147 -13.63334 -13.33020 -12.99854 -12.77032 -12.55017 -11.98866 -11.61389 -11.53238 -11.38961 -11.09485 -10.99351 -10.70464 -10.53374 -10.41141 -10.31460 -10.15633 -9.70084 -9.51300 -9.32235 -9.02874 -8.62233 -7.84506 -7.30819 -6.14447 -4.14421 3.21725 3.33680 3.39788 4.16073 4.33551 4.48231 4.64566 5.16646 5.20751 5.26300 5.38853 5.47342 5.54643 5.55736 5.61286 5.72552 5.77148 5.83453 5.85650 5.95225 5.99405 6.09925 6.12667 6.23803 6.25468 6.30402 6.34593 6.43314 6.46948 6.57048 6.71226 6.95421 7.15735 7.36350 7.48265 7.54569 7.67836 7.90587 8.06008 8.59685 8.92349 9.47315 10.97601 Molecular weight = 254.17amu Principal moments of inertia in cm(-1) A = 0.017742 B = 0.009800 C = 0.007153 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1577.777633 B = 2856.438900 C = 3913.446348 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 N -0.553 5.553 3 C 0.062 3.938 4 C 0.049 3.951 5 N -0.519 5.519 6 C 0.096 3.904 7 C -0.185 4.185 8 C 0.067 3.933 9 O -0.391 6.391 10 C 0.064 3.936 11 C -0.150 4.150 12 C 0.190 3.810 13 H 0.013 0.987 14 C -0.507 4.507 15 H 0.083 0.917 16 C 0.075 3.925 17 N -0.895 5.895 18 Si 0.870 3.130 19 H -0.278 1.278 20 H -0.293 1.293 21 H -0.258 1.258 22 C 0.057 3.943 23 H 0.021 0.979 24 H 0.061 0.939 25 H 0.060 0.940 26 H 0.066 0.934 27 H 0.036 0.964 28 H 0.035 0.965 29 H 0.070 0.930 30 H 0.100 0.900 31 H 0.063 0.937 32 H 0.082 0.918 33 H 0.052 0.948 34 H 0.085 0.915 35 H 0.050 0.950 36 H 0.087 0.913 37 H 0.076 0.924 38 H 0.065 0.935 39 H 0.265 0.735 40 H 0.062 0.938 41 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.181 9.100 6.828 11.378 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 N -0.278 5.278 3 C -0.066 4.066 4 C -0.080 4.080 5 N -0.242 5.242 6 C -0.013 4.013 7 C -0.224 4.224 8 C -0.011 4.011 9 O -0.310 6.310 10 C -0.014 4.014 11 C -0.188 4.188 12 C 0.083 3.917 13 H 0.031 0.969 14 C -0.545 4.545 15 H 0.101 0.899 16 C -0.128 4.128 17 N -0.533 5.533 18 Si 0.699 3.301 19 H -0.205 1.205 20 H -0.220 1.220 21 H -0.183 1.183 22 C -0.071 4.071 23 H 0.040 0.960 24 H 0.080 0.920 25 H 0.079 0.921 26 H 0.084 0.916 27 H 0.054 0.946 28 H 0.054 0.946 29 H 0.089 0.911 30 H 0.118 0.882 31 H 0.081 0.919 32 H 0.100 0.900 33 H 0.071 0.929 34 H 0.104 0.896 35 H 0.068 0.932 36 H 0.105 0.895 37 H 0.094 0.906 38 H 0.084 0.916 39 H 0.075 0.925 40 H 0.080 0.920 41 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges 0.269 9.007 6.863 11.327 hybrid contribution -1.019 -0.857 0.357 1.379 sum -0.750 8.150 7.220 10.914 Atomic orbital electron populations 1.22311 0.88697 1.01359 0.99913 1.62295 1.06713 1.13658 1.45085 1.22072 0.95210 0.89546 0.99768 1.22195 0.93817 0.98385 0.93584 1.62263 1.06024 1.16165 1.39787 1.21614 0.87922 0.94323 0.97463 1.22812 0.96198 1.03217 1.00171 1.22513 0.94415 0.82566 1.01567 1.87843 1.77324 1.25648 1.40196 1.22539 0.94227 0.97471 0.87138 1.22334 0.95582 0.98176 1.02734 1.19736 0.89460 0.85208 0.97333 0.96902 1.20930 1.32742 0.93384 1.07474 0.89891 1.24901 0.95442 0.97307 0.95140 1.69872 1.45201 1.09669 1.28523 0.87064 0.80653 0.78849 0.83525 1.20486 1.21979 1.18292 1.22749 0.97963 0.96306 0.90039 0.95997 0.92011 0.92121 0.91567 0.94565 0.94643 0.91128 0.88159 0.91881 0.89994 0.92924 0.89634 0.93152 0.89466 0.90584 0.91599 0.92528 0.92003 0.94186 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.41 9.63 60.07 0.58 0.98 16 2 N -0.55 -10.54 4.97 -242.75 -1.21 -11.74 16 3 C 0.06 1.05 5.62 -3.76 -0.02 1.03 16 4 C 0.05 0.85 4.83 -3.76 -0.02 0.83 16 5 N -0.52 -10.51 4.52 -219.73 -0.99 -11.50 16 6 C 0.10 1.78 2.06 -67.54 -0.14 1.64 16 7 C -0.18 -3.26 4.72 -26.60 -0.13 -3.39 16 8 C 0.07 1.04 6.84 37.20 0.25 1.29 16 9 O -0.39 -6.17 10.77 -35.23 -0.38 -6.55 16 10 C 0.06 0.89 6.84 37.20 0.25 1.14 16 11 C -0.15 -2.29 5.26 -26.59 -0.14 -2.43 16 12 C 0.19 4.43 1.13 -68.81 -0.08 4.35 16 13 H 0.01 0.33 5.32 -51.93 -0.28 0.06 16 14 C -0.51 -13.60 8.28 -34.44 -0.29 -13.88 16 15 H 0.08 2.43 6.93 -52.49 -0.36 2.06 16 16 C 0.07 2.08 5.45 -17.82 -0.10 1.98 16 17 N -0.89 -26.43 13.96 55.43 0.77 -25.66 16 18 Si 0.87 21.35 24.65 -169.99 -4.19 17.16 16 19 H -0.28 -6.70 6.89 56.52 0.39 -6.31 16 20 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 21 H -0.26 -6.26 6.39 56.52 0.36 -5.90 16 22 C 0.06 1.26 4.47 -3.77 -0.02 1.25 16 23 H 0.02 0.33 8.14 -51.93 -0.42 -0.10 16 24 H 0.06 0.97 8.07 -51.93 -0.42 0.55 16 25 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 26 H 0.07 0.95 8.14 -51.93 -0.42 0.52 16 27 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 28 H 0.04 0.64 6.43 -51.93 -0.33 0.31 16 29 H 0.07 1.09 6.06 -51.93 -0.31 0.77 16 30 H 0.10 2.15 6.28 -51.92 -0.33 1.82 16 31 H 0.06 1.09 6.34 -51.93 -0.33 0.76 16 32 H 0.08 1.63 6.74 -51.93 -0.35 1.28 16 33 H 0.05 0.83 8.14 -51.93 -0.42 0.40 16 34 H 0.09 1.18 8.14 -51.93 -0.42 0.76 16 35 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 36 H 0.09 1.01 8.14 -51.93 -0.42 0.59 16 37 H 0.08 1.13 8.14 -51.93 -0.42 0.71 16 38 H 0.07 0.97 6.17 -51.93 -0.32 0.65 16 39 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 40 H 0.06 1.45 3.97 -51.92 -0.21 1.24 16 41 H 0.04 0.92 8.14 -51.93 -0.42 0.50 16 LS Contribution 296.42 15.07 4.47 4.47 Total: -1.00 -29.20 296.42 -8.02 -37.21 By element: Atomic # 1 Polarization: 8.47 SS G_CDS: -6.65 Total: 1.81 kcal Atomic # 6 Polarization: -5.37 SS G_CDS: 0.17 Total: -5.20 kcal Atomic # 7 Polarization: -47.48 SS G_CDS: -1.43 Total: -48.90 kcal Atomic # 8 Polarization: -6.17 SS G_CDS: -0.38 Total: -6.55 kcal Atomic # 14 Polarization: 21.35 SS G_CDS: -4.19 Total: 17.16 kcal Total LS contribution 4.47 Total: 4.47 kcal Total: -29.20 -8.02 -37.21 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259799733.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.166 kcal (2) G-P(sol) polarization free energy of solvation -29.197 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.031 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.016 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.213 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.047 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds