Wall clock time and date at job start Mon Mar 30 2020 05:11:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46903 * 1 3 3 C 1.50049 * 110.99905 * 2 1 4 4 C 1.50852 * 102.37682 * 213.12776 * 3 2 1 5 5 H 1.09005 * 109.95478 * 291.34436 * 4 3 2 6 6 C 1.57935 * 98.00818 * 45.91867 * 4 3 2 7 7 H 1.09003 * 110.08007 * 66.17112 * 6 4 3 8 8 C 1.50802 * 99.76771 * 181.68172 * 6 4 3 9 9 C 1.55977 * 102.83049 * 326.26849 * 8 6 4 10 10 N 1.44264 * 126.65891 * 155.05449 * 4 3 2 11 11 C 1.46901 * 110.99833 * 85.02094 * 10 4 3 12 12 C 1.53000 * 109.46769 * 170.00212 * 11 10 4 13 13 O 1.42899 * 109.47405 * 64.99669 * 12 11 10 14 14 C 1.42901 * 113.99649 * 179.97438 * 13 12 11 15 15 C 1.50700 * 109.46545 * 179.97438 * 14 13 12 16 16 H 1.07999 * 120.00589 * 0.02562 * 15 14 13 17 17 C 1.37885 * 119.99844 * 180.02562 * 15 14 13 18 18 N 1.31502 * 119.99832 * 0.02562 * 17 15 14 19 19 Si 1.86802 * 119.99825 * 180.02562 * 17 15 14 20 20 H 1.48506 * 109.46818 * 90.00144 * 19 17 15 21 21 H 1.48498 * 109.47067 * 209.99968 * 19 17 15 22 22 H 1.48496 * 109.47458 * 330.00345 * 19 17 15 23 23 C 1.49561 * 110.99544 * 240.21046 * 2 1 3 24 24 H 1.09008 * 109.47025 * 59.99652 * 1 2 3 25 25 H 1.08996 * 109.47306 * 179.97438 * 1 2 3 26 26 H 1.09001 * 109.47211 * 300.00198 * 1 2 3 27 27 H 1.08994 * 110.82075 * 94.90550 * 3 2 1 28 28 H 1.08999 * 110.82202 * 331.34793 * 3 2 1 29 29 H 1.09003 * 110.74347 * 84.60330 * 8 6 4 30 30 H 1.08998 * 110.74343 * 207.93653 * 8 6 4 31 31 H 1.09004 * 110.10561 * 246.99420 * 9 8 6 32 32 H 1.09006 * 110.09945 * 125.38038 * 9 8 6 33 33 H 1.09002 * 109.47401 * 49.99919 * 11 10 4 34 34 H 1.09001 * 109.46874 * 289.99932 * 11 10 4 35 35 H 1.09002 * 109.46642 * 184.99944 * 12 11 10 36 36 H 1.09002 * 109.47069 * 304.99474 * 12 11 10 37 37 H 1.08990 * 109.47463 * 299.99806 * 14 13 12 38 38 H 1.08992 * 109.47069 * 60.00902 * 14 13 12 39 39 H 0.97004 * 120.00403 * 179.97438 * 18 17 15 40 40 H 1.09008 * 110.35777 * 233.64625 * 23 2 1 41 41 H 1.08990 * 110.36217 * 355.94653 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 2.0067 1.4008 0.0000 4 6 3.2746 1.2605 -0.8053 5 1 4.0061 0.6749 -0.2483 6 6 2.6878 0.3979 -1.9910 7 1 1.9664 0.9849 -2.5595 8 6 3.9410 0.1963 -2.8052 9 6 4.7200 1.5283 -2.5778 10 7 3.9409 2.3003 -1.5509 11 6 4.8375 3.0773 -0.6846 12 6 5.7061 3.9978 -1.5444 13 8 4.8779 4.9637 -2.1948 14 6 5.5948 5.8778 -3.0269 15 6 4.6280 6.8454 -3.6594 16 1 3.5718 6.7701 -3.4469 17 6 5.0918 7.8269 -4.5095 18 7 6.3778 7.9184 -4.7687 19 14 3.8934 9.0267 -5.2930 20 1 3.7334 10.2122 -4.4130 21 1 4.4171 9.4579 -6.6140 22 1 2.5770 8.3640 -5.4748 23 6 2.0049 -0.6937 -1.2118 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3634 0.5139 0.8900 27 1 2.2269 1.7313 1.0150 28 1 1.3109 2.0829 -0.4885 29 1 4.5120 -0.6535 -2.4310 30 1 3.6993 0.0658 -3.8600 31 1 4.7758 2.0933 -3.5083 32 1 5.7228 1.3171 -2.2064 33 1 5.4761 2.3980 -0.1200 34 1 4.2452 3.6775 0.0061 35 1 6.4315 4.5085 -0.9111 36 1 6.2313 3.4058 -2.2940 37 1 6.3176 6.4276 -2.4242 38 1 6.1179 5.3252 -3.8073 39 1 6.7041 8.6086 -5.3670 40 1 2.7063 -1.4761 -0.9218 41 1 1.1892 -1.1137 -1.8001 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000590183974.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:11:10 Heat of formation + Delta-G solvation = -12.209318 kcal Electronic energy + Delta-G solvation = -19341.993984 eV Core-core repulsion = 16450.705671 eV Total energy + Delta-G solvation = -2891.288313 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 254.174 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.69443 -37.28516 -36.03568 -32.99786 -32.33899 -30.17963 -29.01764 -27.31585 -26.29796 -25.14714 -22.54235 -22.21501 -21.25559 -20.45263 -19.48334 -16.79217 -16.34742 -15.92471 -15.48093 -15.06310 -14.91978 -14.47468 -14.19087 -13.92116 -13.78881 -13.46552 -12.98949 -12.69928 -12.54682 -12.17813 -11.78204 -11.74082 -11.51091 -11.48076 -11.12695 -10.99437 -10.80971 -10.74917 -10.69176 -10.40111 -10.11328 -9.88976 -9.05679 -8.76808 -8.57000 -8.25651 -8.10626 -6.07385 -4.08263 3.32702 3.37448 3.43517 3.56216 3.81374 4.26898 4.38697 4.74551 4.86594 4.89991 5.00689 5.11469 5.17663 5.20557 5.29181 5.32108 5.43924 5.48496 5.51199 5.57499 5.65760 5.68110 5.70845 5.83084 5.90468 5.97862 6.04934 6.09228 6.16882 6.24070 6.37159 6.53128 6.78255 6.98460 7.13894 7.31049 7.47085 7.84537 8.20575 8.65191 9.06485 9.56508 11.04353 Molecular weight = 254.17amu Principal moments of inertia in cm(-1) A = 0.028655 B = 0.004247 C = 0.004043 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 976.895656 B = 6591.776043 C = 6923.564782 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 N -0.532 5.532 3 C 0.061 3.939 4 C 0.040 3.960 5 H 0.051 0.949 6 C -0.133 4.133 7 H 0.086 0.914 8 C -0.110 4.110 9 C 0.036 3.964 10 N -0.476 5.476 11 C 0.049 3.951 12 C 0.064 3.936 13 O -0.380 6.380 14 C 0.194 3.806 15 C -0.510 4.510 16 H 0.066 0.934 17 C 0.055 3.945 18 N -0.901 5.901 19 Si 0.907 3.093 20 H -0.279 1.279 21 H -0.286 1.286 22 H -0.271 1.271 23 C 0.055 3.945 24 H 0.029 0.971 25 H 0.067 0.933 26 H 0.068 0.932 27 H 0.082 0.918 28 H 0.062 0.938 29 H 0.067 0.933 30 H 0.074 0.926 31 H 0.089 0.911 32 H 0.048 0.952 33 H 0.041 0.959 34 H 0.083 0.917 35 H 0.039 0.961 36 H 0.036 0.964 37 H 0.002 0.998 38 H 0.003 0.997 39 H 0.263 0.737 40 H 0.080 0.920 41 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.329 -17.657 7.817 20.321 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 N -0.256 5.256 3 C -0.066 4.066 4 C -0.071 4.071 5 H 0.069 0.931 6 C -0.152 4.152 7 H 0.104 0.896 8 C -0.149 4.149 9 C -0.091 4.091 10 N -0.200 5.200 11 C -0.079 4.079 12 C -0.014 4.014 13 O -0.300 6.300 14 C 0.120 3.880 15 C -0.549 4.549 16 H 0.085 0.915 17 C -0.145 4.145 18 N -0.540 5.540 19 Si 0.734 3.266 20 H -0.205 1.205 21 H -0.211 1.211 22 H -0.196 1.196 23 C -0.072 4.072 24 H 0.047 0.953 25 H 0.086 0.914 26 H 0.087 0.913 27 H 0.100 0.900 28 H 0.080 0.920 29 H 0.085 0.915 30 H 0.092 0.908 31 H 0.108 0.892 32 H 0.067 0.933 33 H 0.059 0.941 34 H 0.102 0.898 35 H 0.057 0.943 36 H 0.054 0.946 37 H 0.020 0.980 38 H 0.020 0.980 39 H 0.073 0.927 40 H 0.099 0.901 41 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -6.632 -17.403 7.970 20.258 hybrid contribution 0.209 0.647 -0.838 1.079 sum -6.423 -16.757 7.132 19.311 Atomic orbital electron populations 1.22527 0.87760 1.01822 1.00935 1.65091 1.08168 1.14078 1.38305 1.22251 0.95043 0.89293 1.00056 1.22647 0.96156 0.93066 0.95195 0.93079 1.22456 0.98113 0.97765 0.96898 0.89585 1.21805 0.95401 0.97270 1.00402 1.23777 0.95178 0.92826 0.97357 1.64543 1.24957 1.18655 1.11867 1.22378 0.94897 0.95624 0.95010 1.22284 0.92775 0.91355 0.94990 1.87956 1.34206 1.44194 1.63599 1.20176 0.92650 0.86972 0.88242 1.21068 0.94592 1.12790 1.26423 0.91532 1.24943 0.95484 0.97659 0.96442 1.69962 1.12895 1.34301 1.36849 0.86351 0.80971 0.80851 0.78414 1.20495 1.21130 1.19621 1.22194 0.99084 0.96088 0.89870 0.95260 0.91416 0.91280 0.89994 0.91972 0.91458 0.90776 0.89247 0.93334 0.94126 0.89838 0.94252 0.94567 0.98002 0.97951 0.92737 0.90132 0.92017 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.17 9.23 60.07 0.55 0.72 16 2 N -0.53 -5.85 5.57 -240.63 -1.34 -7.19 16 3 C 0.06 0.74 6.54 -3.14 -0.02 0.72 16 4 C 0.04 0.52 2.36 -67.49 -0.16 0.36 16 5 H 0.05 0.67 7.93 -51.93 -0.41 0.26 16 6 C -0.13 -1.56 2.99 -90.26 -0.27 -1.82 16 7 H 0.09 1.16 8.14 -51.93 -0.42 0.73 16 8 C -0.11 -1.23 6.78 -26.24 -0.18 -1.41 16 9 C 0.04 0.50 5.33 -0.35 0.00 0.50 16 10 N -0.48 -7.47 5.33 -221.83 -1.18 -8.65 16 11 C 0.05 0.77 5.31 -3.82 -0.02 0.75 16 12 C 0.06 1.22 5.89 37.16 0.22 1.44 16 13 O -0.38 -9.44 10.27 -35.23 -0.36 -9.80 16 14 C 0.19 5.44 5.69 36.01 0.20 5.65 16 15 C -0.51 -15.36 9.43 -34.44 -0.32 -15.68 16 16 H 0.07 2.00 7.81 -52.49 -0.41 1.59 16 17 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 18 N -0.90 -27.31 13.28 55.43 0.74 -26.58 16 19 Si 0.91 22.19 29.54 -169.99 -5.02 17.17 16 20 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 21 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 22 H -0.27 -6.55 7.11 56.52 0.40 -6.14 16 23 C 0.06 0.56 6.72 -3.58 -0.02 0.53 16 24 H 0.03 0.27 8.11 -51.92 -0.42 -0.15 16 25 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 26 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 27 H 0.08 0.95 8.14 -51.93 -0.42 0.53 16 28 H 0.06 0.82 7.86 -51.93 -0.41 0.41 16 29 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 30 H 0.07 0.78 8.14 -51.93 -0.42 0.35 16 31 H 0.09 1.43 8.12 -51.93 -0.42 1.01 16 32 H 0.05 0.63 7.47 -51.93 -0.39 0.24 16 33 H 0.04 0.54 7.93 -51.93 -0.41 0.13 16 34 H 0.08 1.34 8.14 -51.93 -0.42 0.92 16 35 H 0.04 0.71 8.14 -51.93 -0.42 0.29 16 36 H 0.04 0.67 6.67 -51.93 -0.35 0.32 16 37 H 0.00 0.06 8.14 -51.93 -0.42 -0.36 16 38 H 0.00 0.08 8.14 -51.93 -0.42 -0.35 16 39 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 40 H 0.08 0.77 8.14 -51.92 -0.42 0.34 16 41 H 0.06 0.56 7.65 -51.93 -0.40 0.16 16 LS Contribution 324.46 15.07 4.89 4.89 Total: -1.00 -31.87 324.46 -9.80 -41.67 By element: Atomic # 1 Polarization: 2.60 SS G_CDS: -7.40 Total: -4.80 kcal Atomic # 6 Polarization: -6.60 SS G_CDS: -0.12 Total: -6.72 kcal Atomic # 7 Polarization: -40.63 SS G_CDS: -1.79 Total: -42.41 kcal Atomic # 8 Polarization: -9.44 SS G_CDS: -0.36 Total: -9.80 kcal Atomic # 14 Polarization: 22.19 SS G_CDS: -5.02 Total: 17.17 kcal Total LS contribution 4.89 Total: 4.89 kcal Total: -31.87 -9.80 -41.67 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000590183974.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.460 kcal (2) G-P(sol) polarization free energy of solvation -31.870 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.410 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.799 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.669 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.209 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds