Wall clock time and date at job start Mon Mar 30 2020 05:07:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46904 * 1 3 3 C 1.46846 * 110.99942 * 2 1 4 4 C 1.53035 * 109.52744 * 174.16069 * 3 2 1 5 5 C 1.53123 * 109.27774 * 59.17321 * 4 3 2 6 6 C 1.53114 * 109.16198 * 302.35270 * 5 4 3 7 7 H 1.09000 * 109.50493 * 297.71120 * 6 5 4 8 8 N 1.46498 * 109.53612 * 177.61471 * 6 5 4 9 9 C 1.34778 * 120.00191 * 155.17261 * 8 6 5 10 10 O 1.21273 * 119.99946 * 0.02562 * 9 8 6 11 11 C 1.50699 * 119.99797 * 179.97438 * 9 8 6 12 12 C 1.53000 * 109.47213 * 180.02562 * 11 9 8 13 13 C 1.52995 * 109.47642 * 180.02562 * 12 11 9 14 14 C 1.50701 * 109.47290 * 180.02562 * 13 12 11 15 15 H 1.07991 * 120.00279 * 359.97438 * 14 13 12 16 16 C 1.37884 * 119.99729 * 180.02562 * 14 13 12 17 17 N 1.31518 * 119.99851 * 359.97438 * 16 14 13 18 18 Si 1.86798 * 119.99813 * 179.97438 * 16 14 13 19 19 H 1.48502 * 109.46807 * 59.99947 * 18 16 14 20 20 H 1.48500 * 109.47327 * 180.02562 * 18 16 14 21 21 H 1.48508 * 109.47227 * 300.00236 * 18 16 14 22 22 C 1.46844 * 111.00328 * 235.78846 * 2 1 3 23 23 H 1.09004 * 109.46796 * 63.95343 * 1 2 3 24 24 H 1.09001 * 109.46784 * 183.95487 * 1 2 3 25 25 H 1.08996 * 109.46988 * 303.95771 * 1 2 3 26 26 H 1.09008 * 109.46456 * 294.17536 * 3 2 1 27 27 H 1.09003 * 109.46474 * 54.14041 * 3 2 1 28 28 H 1.08995 * 109.50534 * 179.12351 * 4 3 2 29 29 H 1.09011 * 109.49854 * 299.24031 * 4 3 2 30 30 H 1.09000 * 109.52219 * 182.44440 * 5 4 3 31 31 H 1.08998 * 109.51778 * 62.25946 * 5 4 3 32 32 H 0.97001 * 119.99455 * 335.17614 * 8 6 5 33 33 H 1.09002 * 109.47335 * 300.00116 * 11 9 8 34 34 H 1.08998 * 109.47243 * 60.00151 * 11 9 8 35 35 H 1.09002 * 109.47386 * 300.00249 * 12 11 9 36 36 H 1.09006 * 109.46759 * 59.99896 * 12 11 9 37 37 H 1.09002 * 109.47095 * 299.99989 * 13 12 11 38 38 H 1.08998 * 109.47054 * 59.99761 * 13 12 11 39 39 H 0.97006 * 119.99198 * 179.97438 * 17 16 14 40 40 H 1.09000 * 109.46271 * 305.85568 * 22 2 1 41 41 H 1.09008 * 109.46154 * 65.83367 * 22 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9953 1.3709 0.0000 4 6 3.5181 1.3343 0.1467 5 6 4.1189 0.5370 -1.0143 6 6 3.5182 -0.8714 -1.0208 7 1 3.7814 -1.3835 -0.0953 8 7 4.0447 -1.6233 -2.1625 9 6 4.0825 -2.9700 -2.1229 10 8 3.6803 -3.5593 -1.1423 11 6 4.6236 -3.7434 -3.2977 12 6 4.5538 -5.2420 -2.9974 13 6 5.1037 -6.0273 -4.1898 14 6 5.0344 -7.5034 -3.8942 15 1 4.6383 -7.8471 -2.9502 16 6 5.4779 -8.4151 -4.8287 17 7 5.9608 -7.9965 -5.9782 18 14 5.3927 -10.2448 -4.4621 19 1 3.9805 -10.6360 -4.2210 20 1 5.9274 -11.0070 -5.6189 21 1 6.2028 -10.5460 -3.2544 22 6 1.9954 -0.7708 -1.1337 23 1 -0.3633 0.4513 -0.9233 24 1 -0.3633 -1.0252 0.0709 25 1 -0.3633 0.5740 0.8524 26 1 1.7325 1.8609 -0.9376 27 1 1.5634 1.9258 0.8329 28 1 3.9098 2.3513 0.1311 29 1 3.7813 0.8568 1.0907 30 1 5.1998 0.4714 -0.8904 31 1 3.8888 1.0355 -1.9559 32 1 4.3661 -1.1519 -2.9470 33 1 4.0280 -3.5226 -4.1835 34 1 5.6598 -3.4560 -3.4757 35 1 5.1492 -5.4632 -2.1115 36 1 3.5174 -5.5291 -2.8196 37 1 4.5087 -5.8063 -5.0759 38 1 6.1401 -5.7401 -4.3671 39 1 6.2731 -8.6380 -6.6354 40 1 1.5635 -1.7715 -1.1241 41 1 1.7327 -0.2707 -2.0660 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000594283919.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:07:18 Heat of formation + Delta-G solvation = -60.380290 kcal Electronic energy + Delta-G solvation = -18697.292732 eV Core-core repulsion = 15803.915569 eV Total energy + Delta-G solvation = -2893.377163 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 254.174 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.03451 -38.54577 -34.98246 -34.11692 -32.92282 -32.00376 -29.93650 -27.62184 -27.01024 -24.14574 -23.18378 -22.58463 -20.51001 -20.27089 -19.54488 -16.90973 -16.39689 -16.05495 -15.65868 -15.43095 -15.08439 -14.68520 -14.41002 -14.16831 -13.51887 -13.33553 -13.18416 -12.95179 -12.52338 -12.22958 -12.02684 -11.82197 -11.69482 -11.30964 -11.23265 -10.95318 -10.75857 -10.74307 -10.58072 -10.52341 -9.64496 -9.63065 -9.23054 -9.02718 -8.98268 -8.58957 -8.29338 -5.95360 -3.96642 2.95471 3.18201 3.38504 3.41659 3.45776 3.81842 4.47911 4.51414 4.56981 4.64709 4.86185 5.04847 5.13594 5.18058 5.24577 5.27314 5.36053 5.39315 5.40625 5.57280 5.63062 5.67546 5.74330 5.75244 5.79296 5.93329 6.05585 6.30019 6.49332 6.76460 6.78113 6.84070 6.97098 7.19854 7.64992 7.73854 7.86772 8.05599 8.49235 8.51479 9.10361 9.67127 11.16155 Molecular weight = 254.17amu Principal moments of inertia in cm(-1) A = 0.046298 B = 0.003238 C = 0.003126 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 604.635101 B = 8645.752462 C = 8956.271316 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 N -0.541 5.541 3 C 0.052 3.948 4 C -0.114 4.114 5 C -0.128 4.128 6 C 0.148 3.852 7 H 0.096 0.904 8 N -0.737 5.737 9 C 0.513 3.487 10 O -0.534 6.534 11 C -0.139 4.139 12 C -0.095 4.095 13 C 0.021 3.979 14 C -0.518 4.518 15 H 0.056 0.944 16 C 0.055 3.945 17 N -0.899 5.899 18 Si 0.893 3.107 19 H -0.277 1.277 20 H -0.288 1.288 21 H -0.277 1.277 22 C 0.047 3.953 23 H 0.024 0.976 24 H 0.070 0.930 25 H 0.068 0.932 26 H 0.032 0.968 27 H 0.075 0.925 28 H 0.072 0.928 29 H 0.075 0.925 30 H 0.073 0.927 31 H 0.064 0.936 32 H 0.398 0.602 33 H 0.087 0.913 34 H 0.088 0.912 35 H 0.054 0.946 36 H 0.054 0.946 37 H 0.015 0.985 38 H 0.015 0.985 39 H 0.260 0.740 40 H 0.081 0.919 41 H 0.033 0.967 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.545 22.343 8.638 24.832 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 N -0.266 5.266 3 C -0.076 4.076 4 C -0.152 4.152 5 C -0.166 4.166 6 C 0.042 3.958 7 H 0.114 0.886 8 N -0.390 5.390 9 C 0.300 3.700 10 O -0.409 6.409 11 C -0.179 4.179 12 C -0.133 4.133 13 C -0.016 4.016 14 C -0.557 4.557 15 H 0.074 0.926 16 C -0.145 4.145 17 N -0.538 5.538 18 Si 0.720 3.280 19 H -0.202 1.202 20 H -0.213 1.213 21 H -0.202 1.202 22 C -0.082 4.082 23 H 0.042 0.958 24 H 0.089 0.911 25 H 0.087 0.913 26 H 0.050 0.950 27 H 0.094 0.906 28 H 0.090 0.910 29 H 0.094 0.906 30 H 0.091 0.909 31 H 0.083 0.917 32 H 0.232 0.768 33 H 0.105 0.895 34 H 0.106 0.894 35 H 0.073 0.927 36 H 0.073 0.927 37 H 0.033 0.967 38 H 0.034 0.966 39 H 0.070 0.930 40 H 0.100 0.900 41 H 0.051 0.949 Dipole moment (debyes) X Y Z Total from point charges -6.607 21.595 9.619 24.547 hybrid contribution -0.190 -0.330 -1.120 1.183 sum -6.797 21.265 8.500 23.889 Atomic orbital electron populations 1.22349 0.86906 1.02612 1.00288 1.61814 1.07838 1.13378 1.43539 1.22148 0.95651 0.89319 1.00451 1.21534 0.94367 1.00128 0.99171 1.21868 1.00818 0.94737 0.99221 1.20831 0.91977 0.91813 0.91160 0.88644 1.46181 1.66092 1.06916 1.19846 1.21287 0.77401 0.81635 0.89628 1.90685 1.46863 1.68940 1.34423 1.21848 1.01983 0.98476 0.95549 1.21443 1.01531 0.89548 1.00782 1.19126 0.96032 0.94284 0.92205 1.21249 1.40962 0.91578 1.01869 0.92614 1.25023 0.95382 0.98997 0.95118 1.69959 1.42591 1.34298 1.06970 0.86649 0.78430 0.85218 0.77665 1.20224 1.21350 1.20218 1.22491 0.95781 0.98900 0.91059 0.95756 0.91074 0.91298 0.94959 0.90615 0.90967 0.90631 0.90864 0.91737 0.76775 0.89451 0.89389 0.92695 0.92736 0.96652 0.96624 0.93035 0.90006 0.94876 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.23 9.59 60.07 0.58 0.81 16 2 N -0.54 -5.58 4.91 -242.96 -1.19 -6.78 16 3 C 0.05 0.42 5.46 -3.84 -0.02 0.40 16 4 C -0.11 -0.85 6.09 -26.65 -0.16 -1.01 16 5 C -0.13 -1.05 5.47 -26.61 -0.15 -1.20 16 6 C 0.15 1.68 2.61 -67.86 -0.18 1.50 16 7 H 0.10 1.35 7.58 -51.93 -0.39 0.95 16 8 N -0.74 -8.78 5.08 -53.74 -0.27 -9.05 16 9 C 0.51 8.31 7.79 -10.99 -0.09 8.22 16 10 O -0.53 -10.84 15.65 5.56 0.09 -10.75 16 11 C -0.14 -2.31 5.70 -27.88 -0.16 -2.47 16 12 C -0.09 -2.08 4.44 -26.73 -0.12 -2.20 16 13 C 0.02 0.54 4.97 -27.88 -0.14 0.40 16 14 C -0.52 -15.18 9.11 -34.44 -0.31 -15.49 16 15 H 0.06 1.61 7.74 -52.49 -0.41 1.20 16 16 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 17 N -0.90 -27.34 13.29 55.43 0.74 -26.60 16 18 Si 0.89 22.22 29.54 -169.99 -5.02 17.20 16 19 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 20 H -0.29 -7.04 7.11 56.52 0.40 -6.63 16 21 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 22 C 0.05 0.54 5.04 -3.84 -0.02 0.52 16 23 H 0.02 0.20 8.14 -51.93 -0.42 -0.23 16 24 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 25 H 0.07 0.50 8.10 -51.93 -0.42 0.08 16 26 H 0.03 0.25 8.14 -51.92 -0.42 -0.17 16 27 H 0.08 0.53 8.09 -51.93 -0.42 0.11 16 28 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 29 H 0.07 0.62 8.14 -51.92 -0.42 0.20 16 30 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 31 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 32 H 0.40 3.59 8.60 -40.82 -0.35 3.23 16 33 H 0.09 1.32 8.14 -51.93 -0.42 0.90 16 34 H 0.09 1.33 8.14 -51.93 -0.42 0.91 16 35 H 0.05 1.25 8.10 -51.93 -0.42 0.83 16 36 H 0.05 1.24 8.10 -51.93 -0.42 0.82 16 37 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 38 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 39 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 40 H 0.08 1.14 8.12 -51.93 -0.42 0.72 16 41 H 0.03 0.36 8.14 -51.92 -0.42 -0.07 16 LS Contribution 331.99 15.07 5.00 5.00 Total: -1.00 -33.35 331.99 -8.99 -42.33 By element: Atomic # 1 Polarization: 5.10 SS G_CDS: -7.46 Total: -2.36 kcal Atomic # 6 Polarization: -8.13 SS G_CDS: -0.86 Total: -8.99 kcal Atomic # 7 Polarization: -41.70 SS G_CDS: -0.73 Total: -42.43 kcal Atomic # 8 Polarization: -10.84 SS G_CDS: 0.09 Total: -10.75 kcal Atomic # 14 Polarization: 22.22 SS G_CDS: -5.02 Total: 17.20 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -33.35 -8.99 -42.33 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594283919.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.048 kcal (2) G-P(sol) polarization free energy of solvation -33.346 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.394 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.986 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.332 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.380 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds