Wall clock time and date at job start Mon Mar 30 2020 04:02:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 N 1.46903 * 109.47246 * 2 1 4 4 C 1.47899 * 111.00301 * 184.27895 * 3 2 1 5 5 C 1.53986 * 107.05880 * 145.84453 * 4 3 2 6 6 C 1.54597 * 105.14112 * 358.78074 * 5 4 3 7 7 H 1.08995 * 110.72894 * 96.57738 * 6 5 4 8 8 C 1.53009 * 110.72206 * 219.68600 * 6 5 4 9 9 N 1.46497 * 109.46712 * 293.53918 * 8 6 5 10 10 C 1.34774 * 120.00016 * 180.02562 * 9 8 6 11 11 O 1.21284 * 120.00012 * 359.73177 * 10 9 8 12 12 C 1.50703 * 120.00536 * 180.02562 * 10 9 8 13 13 H 1.08996 * 109.46788 * 300.00721 * 12 10 9 14 14 C 1.53005 * 109.46573 * 60.00278 * 12 10 9 15 15 C 1.50697 * 109.47281 * 180.02562 * 12 10 9 16 16 H 1.07996 * 120.00330 * 359.97438 * 15 12 10 17 17 C 1.37874 * 119.99642 * 180.02562 * 15 12 10 18 18 N 1.31512 * 120.00592 * 0.02562 * 17 15 12 19 19 Si 1.86801 * 119.99941 * 180.02562 * 17 15 12 20 20 H 1.48499 * 109.47281 * 59.99712 * 19 17 15 21 21 H 1.48497 * 109.47418 * 180.02562 * 19 17 15 22 22 H 1.48508 * 109.46956 * 299.99926 * 19 17 15 23 23 C 1.48527 * 111.00181 * 301.68051 * 3 2 1 24 24 H 1.09002 * 109.47357 * 305.15837 * 1 2 3 25 25 H 1.09006 * 109.47468 * 65.15722 * 1 2 3 26 26 H 1.08995 * 109.47430 * 185.15619 * 1 2 3 27 27 H 1.08998 * 109.47046 * 240.00446 * 2 1 3 28 28 H 1.08997 * 109.47445 * 120.00278 * 2 1 3 29 29 H 1.09005 * 109.91456 * 26.49551 * 4 3 2 30 30 H 1.09004 * 109.91643 * 265.20222 * 4 3 2 31 31 H 1.08996 * 110.31198 * 239.86201 * 5 4 3 32 32 H 1.09002 * 110.30992 * 117.69116 * 5 4 3 33 33 H 1.09000 * 109.46960 * 173.54286 * 8 6 5 34 34 H 1.08994 * 109.47337 * 53.54139 * 8 6 5 35 35 H 0.97002 * 120.00548 * 0.02562 * 9 8 6 36 36 H 1.09000 * 109.47129 * 299.99816 * 14 12 10 37 37 H 1.08994 * 109.47379 * 60.00188 * 14 12 10 38 38 H 1.09004 * 109.46727 * 180.02562 * 14 12 10 39 39 H 0.96999 * 120.00598 * 180.02562 * 18 17 15 40 40 H 1.08994 * 110.67365 * 81.84082 * 23 3 2 41 41 H 1.09004 * 110.66569 * 318.70989 * 23 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 3.4945 1.4258 -0.1030 5 6 3.8554 2.6762 -0.9261 6 6 2.4997 3.3156 -1.3046 7 1 2.2408 4.1123 -0.6073 8 6 2.5326 3.8446 -2.7400 9 7 3.4755 4.9625 -2.8268 10 6 3.6699 5.5902 -4.0035 11 8 3.0679 5.2265 -4.9916 12 6 4.6402 6.7398 -4.0931 13 1 4.3237 7.5357 -3.4191 14 6 6.0375 6.2599 -3.6950 15 6 4.6716 7.2617 -5.5065 16 1 4.0513 6.8063 -6.2642 17 6 5.4931 8.3200 -5.8324 18 7 6.2496 8.8736 -4.9101 19 14 5.5315 8.9674 -7.5842 20 1 4.1753 9.4340 -7.9693 21 1 6.4887 10.0993 -7.6727 22 1 5.9615 7.8832 -8.5033 23 6 1.5105 2.1296 -1.1800 24 1 -0.3634 0.5918 0.8402 25 1 -0.3634 0.4318 -0.9326 26 1 -0.3634 -1.0234 0.0924 27 1 1.8932 -0.5138 -0.8900 28 1 1.8933 -0.5138 0.8899 29 1 3.8562 0.5308 -0.6094 30 1 3.9344 1.4963 0.8918 31 1 4.4038 2.3925 -1.8243 32 1 4.4450 3.3679 -0.3245 33 1 1.5372 4.1859 -3.0243 34 1 2.8498 3.0485 -3.4135 35 1 3.9599 5.2509 -2.0375 36 1 6.0144 5.8827 -2.6726 37 1 6.3540 5.4639 -4.3689 38 1 6.7392 7.0914 -3.7593 39 1 6.8272 9.6184 -5.1393 40 1 0.4980 2.4906 -0.9997 41 1 1.5441 1.5052 -2.0728 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000596885310.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:02:31 Heat of formation + Delta-G solvation = -50.052641 kcal Electronic energy + Delta-G solvation = -19031.568100 eV Core-core repulsion = 16138.638778 eV Total energy + Delta-G solvation = -2892.929323 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 254.174 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -39.59536 -38.48420 -35.00581 -33.69206 -32.80848 -30.70820 -29.61705 -28.61565 -25.49261 -25.08481 -22.84144 -22.19867 -20.87728 -20.27119 -19.18952 -16.52550 -16.39561 -16.11070 -15.32161 -15.23325 -14.74564 -14.27595 -14.22397 -14.10026 -13.41775 -13.02222 -12.80695 -12.64738 -12.42202 -12.19485 -11.70786 -11.52501 -11.43477 -11.25837 -11.15630 -10.97346 -10.89247 -10.69665 -10.67029 -10.62205 -10.21773 -9.93314 -8.95579 -8.66240 -8.57264 -8.38686 -8.28871 -6.00450 -4.03513 3.38026 3.40215 3.45782 3.70997 3.78432 3.94679 4.47091 4.48405 4.64316 4.74043 4.86948 5.00861 5.08918 5.22363 5.29536 5.32694 5.39492 5.48052 5.56968 5.60436 5.71224 5.74689 5.84203 5.89979 5.94067 6.05922 6.20148 6.36918 6.64617 6.66647 6.82119 6.85641 6.96002 7.13666 7.50958 7.78658 8.02246 8.18861 8.49689 9.05349 9.29241 9.62023 11.07168 Molecular weight = 254.17amu Principal moments of inertia in cm(-1) A = 0.052812 B = 0.003728 C = 0.003567 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 530.055386 B = 7509.131045 C = 7848.848398 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.042 3.958 3 N -0.519 5.519 4 C 0.036 3.964 5 C -0.128 4.128 6 C -0.102 4.102 7 H 0.089 0.911 8 C 0.130 3.870 9 N -0.745 5.745 10 C 0.518 3.482 11 O -0.548 6.548 12 C 0.029 3.971 13 H 0.052 0.948 14 C -0.131 4.131 15 C -0.501 4.501 16 H 0.073 0.927 17 C 0.058 3.942 18 N -0.898 5.898 19 Si 0.900 3.100 20 H -0.276 1.276 21 H -0.288 1.288 22 H -0.277 1.277 23 C 0.043 3.957 24 H 0.064 0.936 25 H 0.055 0.945 26 H 0.058 0.942 27 H 0.034 0.966 28 H 0.074 0.926 29 H 0.043 0.957 30 H 0.078 0.922 31 H 0.073 0.927 32 H 0.075 0.925 33 H 0.061 0.939 34 H 0.058 0.942 35 H 0.396 0.604 36 H 0.012 0.988 37 H 0.030 0.970 38 H 0.093 0.907 39 H 0.261 0.739 40 H 0.084 0.916 41 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.300 -14.676 12.222 20.111 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.087 4.087 3 N -0.243 5.243 4 C -0.092 4.092 5 C -0.166 4.166 6 C -0.122 4.122 7 H 0.108 0.892 8 C 0.005 3.995 9 N -0.400 5.400 10 C 0.308 3.692 11 O -0.424 6.424 12 C 0.008 3.992 13 H 0.069 0.931 14 C -0.189 4.189 15 C -0.540 4.540 16 H 0.091 0.909 17 C -0.142 4.142 18 N -0.537 5.537 19 Si 0.728 3.272 20 H -0.202 1.202 21 H -0.214 1.214 22 H -0.202 1.202 23 C -0.085 4.085 24 H 0.083 0.917 25 H 0.074 0.926 26 H 0.077 0.923 27 H 0.052 0.948 28 H 0.092 0.908 29 H 0.062 0.938 30 H 0.096 0.904 31 H 0.091 0.909 32 H 0.094 0.906 33 H 0.079 0.921 34 H 0.076 0.924 35 H 0.229 0.771 36 H 0.031 0.969 37 H 0.049 0.951 38 H 0.111 0.889 39 H 0.071 0.929 40 H 0.103 0.897 41 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -6.793 -14.580 11.990 20.062 hybrid contribution 0.588 0.019 -1.199 1.336 sum -6.205 -14.561 10.791 19.157 Atomic orbital electron populations 1.21812 0.94767 1.01765 1.02554 1.22250 0.96234 0.89443 1.00738 1.64823 1.06684 1.13055 1.39781 1.22864 0.88351 0.97579 1.00382 1.22500 0.97317 0.96672 1.00153 1.22322 0.95182 0.97750 0.96914 0.89239 1.21143 0.94066 0.89835 0.94465 1.46253 1.45781 1.35172 1.12774 1.21970 0.82353 0.83748 0.81134 1.90525 1.49505 1.66189 1.36225 1.18859 0.90441 0.90248 0.99640 0.93058 1.21734 1.00083 1.01546 0.95575 1.21121 1.23964 1.14949 0.93925 0.90871 1.24947 0.95326 0.96383 0.97590 1.69859 1.26663 1.24270 1.32928 0.86512 0.77814 0.78197 0.84639 1.20190 1.21392 1.20228 1.23185 0.99076 0.94387 0.91828 0.91709 0.92593 0.92310 0.94799 0.90789 0.93833 0.90351 0.90876 0.90634 0.92088 0.92362 0.77067 0.96940 0.95085 0.88879 0.92935 0.89724 0.93331 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.14 9.59 37.15 0.36 -0.79 16 2 C 0.04 0.36 5.56 -3.83 -0.02 0.33 16 3 N -0.52 -5.23 5.35 -230.47 -1.23 -6.46 16 4 C 0.04 0.35 6.70 -2.76 -0.02 0.33 16 5 C -0.13 -1.35 6.20 -25.38 -0.16 -1.51 16 6 C -0.10 -1.15 3.13 -88.75 -0.28 -1.43 16 7 H 0.09 1.00 8.14 -51.93 -0.42 0.58 16 8 C 0.13 1.90 5.00 -4.04 -0.02 1.88 16 9 N -0.75 -12.92 5.29 -60.29 -0.32 -13.24 16 10 C 0.52 11.95 7.15 -10.99 -0.08 11.87 16 11 O -0.55 -14.55 15.46 5.55 0.09 -14.47 16 12 C 0.03 0.73 2.64 -92.92 -0.25 0.49 16 13 H 0.05 1.33 8.14 -51.93 -0.42 0.91 16 14 C -0.13 -3.03 8.87 37.16 0.33 -2.70 16 15 C -0.50 -14.42 8.38 -34.44 -0.29 -14.71 16 16 H 0.07 2.22 6.75 -52.49 -0.35 1.87 16 17 C 0.06 1.63 5.30 -17.82 -0.09 1.53 16 18 N -0.90 -25.40 11.32 55.43 0.63 -24.78 16 19 Si 0.90 22.04 29.54 -169.99 -5.02 17.02 16 20 H -0.28 -6.75 7.11 56.52 0.40 -6.34 16 21 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 22 H -0.28 -6.76 7.11 56.52 0.40 -6.35 16 23 C 0.04 0.45 4.81 -1.90 -0.01 0.44 16 24 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 25 H 0.05 0.44 7.18 -51.93 -0.37 0.06 16 26 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 27 H 0.03 0.29 7.97 -51.93 -0.41 -0.12 16 28 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 29 H 0.04 0.41 7.67 -51.93 -0.40 0.01 16 30 H 0.08 0.71 8.14 -51.93 -0.42 0.28 16 31 H 0.07 0.84 7.80 -51.93 -0.41 0.44 16 32 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 33 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 34 H 0.06 0.91 8.07 -51.93 -0.42 0.49 16 35 H 0.40 5.97 7.75 -40.82 -0.32 5.65 16 36 H 0.01 0.23 7.57 -51.93 -0.39 -0.17 16 37 H 0.03 0.71 8.14 -51.93 -0.42 0.29 16 38 H 0.09 2.36 6.07 -51.93 -0.32 2.05 16 39 H 0.26 7.06 8.31 -40.82 -0.34 6.72 16 40 H 0.08 0.83 7.77 -51.93 -0.40 0.42 16 41 H 0.05 0.51 7.92 -51.93 -0.41 0.10 16 LS Contribution 325.70 15.07 4.91 4.91 Total: -1.00 -31.21 325.70 -8.62 -39.83 By element: Atomic # 1 Polarization: 8.59 SS G_CDS: -7.14 Total: 1.44 kcal Atomic # 6 Polarization: -3.73 SS G_CDS: -0.52 Total: -4.25 kcal Atomic # 7 Polarization: -43.55 SS G_CDS: -0.93 Total: -44.48 kcal Atomic # 8 Polarization: -14.55 SS G_CDS: 0.09 Total: -14.47 kcal Atomic # 14 Polarization: 22.04 SS G_CDS: -5.02 Total: 17.02 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -31.21 -8.62 -39.83 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596885310.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.223 kcal (2) G-P(sol) polarization free energy of solvation -31.210 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.433 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.619 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.830 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.053 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds