Wall clock time and date at job start Mon Mar 30 2020 04:48:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 N 1.46504 * 109.46702 * 2 1 4 4 C 1.34779 * 119.99781 * 262.76977 * 3 2 1 5 5 O 1.21279 * 120.00043 * 175.68681 * 4 3 2 6 6 C 1.50697 * 119.99859 * 355.69339 * 4 3 2 7 7 H 1.08994 * 109.47314 * 329.04991 * 6 4 3 8 8 C 1.52999 * 109.47260 * 89.05217 * 6 4 3 9 9 C 1.50709 * 109.46973 * 209.05226 * 6 4 3 10 10 H 1.07994 * 119.99711 * 359.97438 * 9 6 4 11 11 C 1.37872 * 119.99789 * 179.97438 * 9 6 4 12 12 N 1.31512 * 120.00576 * 0.02562 * 11 9 6 13 13 Si 1.86800 * 119.99488 * 179.97438 * 11 9 6 14 14 H 1.48497 * 109.47376 * 0.02562 * 13 11 9 15 15 H 1.48504 * 109.46912 * 120.00345 * 13 11 9 16 16 H 1.48498 * 109.47181 * 239.99892 * 13 11 9 17 17 C 1.46495 * 120.00096 * 82.77882 * 3 2 1 18 18 H 1.09006 * 110.90438 * 357.58135 * 17 3 2 19 19 C 1.55143 * 110.99089 * 233.71830 * 17 3 2 20 20 C 1.54313 * 103.01972 * 206.25567 * 19 17 3 21 21 N 1.47446 * 107.23397 * 22.27842 * 20 19 17 22 22 C 1.46902 * 110.99646 * 123.25892 * 21 20 19 23 23 C 1.47840 * 108.56817 * 0.99300 * 21 20 19 24 24 H 1.08993 * 109.47137 * 51.57919 * 1 2 3 25 25 H 1.09002 * 109.46645 * 171.58290 * 1 2 3 26 26 H 1.08998 * 109.46598 * 291.58091 * 1 2 3 27 27 H 1.09001 * 109.46700 * 240.00222 * 2 1 3 28 28 H 1.08997 * 109.46937 * 119.99511 * 2 1 3 29 29 H 1.09000 * 109.47035 * 47.12784 * 8 6 4 30 30 H 1.09009 * 109.46782 * 167.11967 * 8 6 4 31 31 H 1.08998 * 109.47506 * 287.11946 * 8 6 4 32 32 H 0.96998 * 119.99958 * 179.97438 * 12 11 9 33 33 H 1.09000 * 110.70648 * 87.86839 * 19 17 3 34 34 H 1.09000 * 110.70302 * 324.63715 * 19 17 3 35 35 H 1.08995 * 109.88880 * 262.87702 * 20 19 17 36 36 H 1.08998 * 109.89246 * 141.68626 * 20 19 17 37 37 H 1.08999 * 109.47229 * 299.15621 * 22 21 20 38 38 H 1.08996 * 109.47573 * 59.16040 * 22 21 20 39 39 H 1.09003 * 109.47045 * 179.15576 * 22 21 20 40 40 H 1.09004 * 110.37221 * 94.72767 * 23 21 20 41 41 H 1.09000 * 110.37448 * 217.07482 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.3814 1.9677 -1.1580 5 8 2.7110 3.1347 -1.1694 6 6 2.3776 1.1731 -2.4385 7 1 2.6033 0.1296 -2.2192 8 6 0.9989 1.2697 -3.0946 9 6 3.4200 1.7263 -3.3759 10 1 4.0243 2.5691 -3.0747 11 6 3.6020 1.1563 -4.6180 12 7 2.8657 0.1302 -4.9851 13 14 4.8935 1.8424 -5.7802 14 1 5.5815 2.9890 -5.1344 15 1 5.8864 0.7845 -6.0970 16 1 4.2397 2.2987 -7.0330 17 6 2.1121 2.1251 1.2586 18 1 1.7429 1.5273 2.0920 19 6 1.3537 3.4752 1.1641 20 6 2.0837 4.3571 2.1987 21 7 3.4255 3.7789 2.3964 22 6 4.4725 4.7706 2.1164 23 6 3.5641 2.5992 1.5162 24 1 -0.3633 0.6386 -0.8051 25 1 -0.3633 -1.0166 -0.1504 26 1 -0.3632 0.3780 0.9556 27 1 1.8933 -0.5138 -0.8900 28 1 1.8934 -0.5137 0.8900 29 1 0.6740 2.3102 -3.1060 30 1 1.0560 0.8958 -4.1170 31 1 0.2844 0.6721 -2.5286 32 1 2.9936 -0.2705 -5.8591 33 1 0.3059 3.3485 1.4365 34 1 1.4444 3.8990 0.1640 35 1 1.5360 4.3537 3.1411 36 1 2.1709 5.3761 1.8217 37 1 4.3955 5.0973 1.0793 38 1 4.3472 5.6279 2.7776 39 1 5.4518 4.3223 2.2844 40 1 4.0437 2.8797 0.5784 41 1 4.1355 1.8173 2.0166 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597945714.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:48:17 Heat of formation + Delta-G solvation = -26.807891 kcal Electronic energy + Delta-G solvation = -20380.381733 eV Core-core repulsion = 17488.460378 eV Total energy + Delta-G solvation = -2891.921355 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 254.174 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -39.95025 -37.70679 -35.18798 -33.84356 -31.69307 -30.21181 -29.73312 -27.97142 -25.35251 -25.18586 -23.15376 -22.45856 -20.87547 -20.65201 -17.87881 -16.61444 -16.47387 -15.68167 -15.24684 -14.71444 -14.22710 -14.05506 -13.83809 -13.49577 -13.25763 -13.06956 -12.77483 -12.60107 -12.04908 -11.81261 -11.49387 -11.46693 -11.31698 -11.15069 -11.05312 -11.02859 -10.87065 -10.62846 -10.59072 -10.39333 -10.18920 -9.99178 -8.95905 -8.51447 -8.26244 -8.12338 -8.04540 -6.06050 -4.10077 3.29288 3.37041 3.43073 3.53827 3.66150 4.33582 4.44497 4.89462 4.96026 5.21237 5.25706 5.35226 5.41559 5.49231 5.61663 5.66811 5.68498 5.71164 5.86425 5.90885 6.01417 6.02346 6.15188 6.21171 6.27700 6.30092 6.39430 6.54195 6.71465 6.89833 6.99761 7.02254 7.18309 7.29547 7.41360 7.76881 7.95616 8.11818 8.37070 8.95493 9.21145 9.54917 11.00644 Molecular weight = 254.17amu Principal moments of inertia in cm(-1) A = 0.021772 B = 0.007198 C = 0.005857 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1285.725107 B = 3889.188776 C = 4779.492809 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.104 3.896 3 N -0.619 5.619 4 C 0.526 3.474 5 O -0.543 6.543 6 C 0.030 3.970 7 H 0.048 0.952 8 C -0.133 4.133 9 C -0.497 4.497 10 H 0.067 0.933 11 C 0.059 3.941 12 N -0.894 5.894 13 Si 0.897 3.103 14 H -0.272 1.272 15 H -0.284 1.284 16 H -0.284 1.284 17 C 0.143 3.857 18 H 0.090 0.910 19 C -0.161 4.161 20 C 0.048 3.952 21 N -0.532 5.532 22 C 0.021 3.979 23 C 0.027 3.973 24 H 0.065 0.935 25 H 0.062 0.938 26 H 0.048 0.952 27 H 0.096 0.904 28 H 0.065 0.935 29 H 0.025 0.975 30 H 0.095 0.905 31 H 0.020 0.980 32 H 0.261 0.739 33 H 0.065 0.935 34 H 0.100 0.900 35 H 0.071 0.929 36 H 0.053 0.947 37 H 0.033 0.967 38 H 0.063 0.937 39 H 0.064 0.936 40 H 0.071 0.929 41 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.410 1.047 12.426 12.928 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C -0.020 4.020 3 N -0.354 5.354 4 C 0.318 3.682 5 O -0.419 6.419 6 C 0.009 3.991 7 H 0.065 0.935 8 C -0.191 4.191 9 C -0.536 4.536 10 H 0.085 0.915 11 C -0.142 4.142 12 N -0.533 5.533 13 Si 0.725 3.275 14 H -0.197 1.197 15 H -0.210 1.210 16 H -0.210 1.210 17 C 0.038 3.962 18 H 0.108 0.892 19 C -0.200 4.200 20 C -0.081 4.081 21 N -0.256 5.256 22 C -0.128 4.128 23 C -0.101 4.101 24 H 0.084 0.916 25 H 0.081 0.919 26 H 0.067 0.933 27 H 0.114 0.886 28 H 0.083 0.917 29 H 0.045 0.955 30 H 0.113 0.887 31 H 0.039 0.961 32 H 0.070 0.930 33 H 0.083 0.917 34 H 0.119 0.881 35 H 0.089 0.911 36 H 0.071 0.929 37 H 0.052 0.948 38 H 0.081 0.919 39 H 0.083 0.917 40 H 0.089 0.911 41 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -3.175 1.414 12.772 13.237 hybrid contribution 0.506 0.482 -1.404 1.568 sum -2.669 1.896 11.369 11.831 Atomic orbital electron populations 1.22281 0.96505 1.02080 1.01989 1.21615 0.94072 0.82849 1.03427 1.48182 1.66852 1.13924 1.06400 1.21948 0.73346 0.87905 0.85000 1.90454 1.47513 1.17586 1.86395 1.18925 0.96292 0.95698 0.88157 0.93456 1.21766 0.94569 0.98463 1.04289 1.21102 1.17517 1.15653 0.99286 0.91464 1.24924 0.96381 0.94956 0.97919 1.69877 1.39657 1.22889 1.20896 0.86436 0.81394 0.79039 0.80625 1.19666 1.21017 1.20965 1.21937 0.94816 0.92711 0.86730 0.89175 1.23272 0.98643 0.95983 1.02141 1.22705 0.89753 0.97458 0.98153 1.63596 1.02666 1.07159 1.52223 1.22506 0.95342 0.95243 0.99669 1.23398 0.97494 0.92801 0.96427 0.91610 0.91938 0.93270 0.88580 0.91656 0.95536 0.88660 0.96127 0.92955 0.91662 0.88129 0.91083 0.92870 0.94800 0.91855 0.91733 0.91094 0.90834 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.24 9.95 37.16 0.37 -1.87 16 2 C 0.10 1.54 6.06 -4.04 -0.02 1.52 16 3 N -0.62 -11.01 2.56 -163.68 -0.42 -11.43 16 4 C 0.53 11.75 5.96 -10.99 -0.07 11.69 16 5 O -0.54 -13.50 11.98 5.56 0.07 -13.43 16 6 C 0.03 0.74 1.93 -92.92 -0.18 0.56 16 7 H 0.05 1.18 5.97 -51.93 -0.31 0.87 16 8 C -0.13 -3.11 9.13 37.16 0.34 -2.77 16 9 C -0.50 -13.91 8.32 -34.44 -0.29 -14.19 16 10 H 0.07 1.99 7.11 -52.49 -0.37 1.62 16 11 C 0.06 1.62 5.25 -17.82 -0.09 1.52 16 12 N -0.89 -24.77 11.31 55.43 0.63 -24.14 16 13 Si 0.90 21.62 29.54 -169.99 -5.02 16.60 16 14 H -0.27 -6.63 7.11 56.52 0.40 -6.23 16 15 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 16 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 17 C 0.14 2.27 3.54 -65.79 -0.23 2.03 16 18 H 0.09 1.23 7.99 -51.93 -0.41 0.82 16 19 C -0.16 -2.55 6.28 -24.91 -0.16 -2.70 16 20 C 0.05 0.67 6.90 -2.84 -0.02 0.65 16 21 N -0.53 -8.02 5.44 -239.52 -1.30 -9.32 16 22 C 0.02 0.29 9.13 60.07 0.55 0.84 16 23 C 0.03 0.45 6.13 -2.30 -0.01 0.44 16 24 H 0.06 1.00 6.20 -51.93 -0.32 0.67 16 25 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 26 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 27 H 0.10 1.59 5.50 -51.93 -0.29 1.30 16 28 H 0.07 0.81 8.12 -51.93 -0.42 0.39 16 29 H 0.03 0.62 8.07 -51.93 -0.42 0.20 16 30 H 0.09 2.46 5.84 -51.92 -0.30 2.16 16 31 H 0.02 0.41 5.84 -51.93 -0.30 0.10 16 32 H 0.26 6.88 8.31 -40.82 -0.34 6.55 16 33 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 34 H 0.10 1.96 5.56 -51.93 -0.29 1.67 16 35 H 0.07 0.88 8.14 -51.93 -0.42 0.45 16 36 H 0.05 0.75 7.58 -51.93 -0.39 0.35 16 37 H 0.03 0.53 8.09 -51.93 -0.42 0.11 16 38 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 39 H 0.06 0.84 8.14 -51.93 -0.42 0.41 16 40 H 0.07 1.42 5.85 -51.93 -0.30 1.12 16 41 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 LS Contribution 313.76 15.07 4.73 4.73 Total: -1.00 -29.63 313.76 -7.79 -37.42 By element: Atomic # 1 Polarization: 8.50 SS G_CDS: -6.65 Total: 1.85 kcal Atomic # 6 Polarization: -2.46 SS G_CDS: 0.18 Total: -2.28 kcal Atomic # 7 Polarization: -43.80 SS G_CDS: -1.10 Total: -44.89 kcal Atomic # 8 Polarization: -13.50 SS G_CDS: 0.07 Total: -13.43 kcal Atomic # 14 Polarization: 21.62 SS G_CDS: -5.02 Total: 16.60 kcal Total LS contribution 4.73 Total: 4.73 kcal Total: -29.63 -7.79 -37.42 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597945714.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.617 kcal (2) G-P(sol) polarization free energy of solvation -29.633 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.016 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.792 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.425 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.808 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds