Wall clock time and date at job start Mon Mar 30 2020 04:48:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 N 1.46499 * 109.47149 * 2 1 4 4 C 1.34774 * 119.99966 * 89.99660 * 3 2 1 5 5 O 1.21288 * 120.00049 * 179.97438 * 4 3 2 6 6 C 1.50699 * 120.00325 * 359.97438 * 4 3 2 7 7 C 1.53001 * 109.47500 * 180.02562 * 6 4 3 8 8 C 1.50694 * 109.47168 * 180.02562 * 7 6 4 9 9 H 1.08000 * 120.00563 * 359.97438 * 8 7 6 10 10 C 1.37885 * 119.99902 * 179.97438 * 8 7 6 11 11 N 1.31518 * 119.99792 * 179.72330 * 10 8 7 12 12 Si 1.86795 * 120.00009 * 0.02562 * 10 8 7 13 13 H 1.48501 * 109.47088 * 89.99795 * 12 10 8 14 14 H 1.48495 * 109.47293 * 209.99997 * 12 10 8 15 15 H 1.48507 * 109.47015 * 329.99955 * 12 10 8 16 16 C 1.46499 * 120.00136 * 269.99915 * 3 2 1 17 17 H 1.09005 * 110.28509 * 357.87028 * 16 3 2 18 18 C 1.54256 * 110.32715 * 119.99905 * 16 3 2 19 19 C 1.54372 * 105.06253 * 118.89701 * 18 16 3 20 20 N 1.48567 * 104.59326 * 23.85188 * 19 18 16 21 21 C 1.46901 * 110.99808 * 200.95963 * 20 19 18 22 22 C 1.48558 * 104.22128 * 320.51936 * 20 19 18 23 23 H 1.09003 * 109.46484 * 59.99983 * 1 2 3 24 24 H 1.08996 * 109.46897 * 179.97438 * 1 2 3 25 25 H 1.08998 * 109.47134 * 300.00384 * 1 2 3 26 26 H 1.08998 * 109.47134 * 239.99616 * 2 1 3 27 27 H 1.09003 * 109.46484 * 120.00017 * 2 1 3 28 28 H 1.09000 * 109.46737 * 59.99782 * 6 4 3 29 29 H 1.09002 * 109.46890 * 299.99893 * 6 4 3 30 30 H 1.08998 * 109.46837 * 60.00023 * 7 6 4 31 31 H 1.09002 * 109.46926 * 299.99827 * 7 6 4 32 32 H 0.97000 * 119.99468 * 179.97438 * 11 10 8 33 33 H 1.08998 * 110.32288 * 237.79283 * 18 16 3 34 34 H 1.08997 * 110.32250 * 359.97438 * 18 16 3 35 35 H 1.08998 * 110.41660 * 142.63014 * 19 18 16 36 36 H 1.09003 * 110.41310 * 264.96016 * 19 18 16 37 37 H 1.08995 * 109.47379 * 60.13218 * 21 20 19 38 38 H 1.09004 * 109.47046 * 180.12495 * 21 20 19 39 39 H 1.09000 * 109.47255 * 300.12531 * 21 20 19 40 40 H 1.09000 * 110.40917 * 280.70175 * 22 20 19 41 41 H 1.09000 * 110.41036 * 158.26444 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2430 2.0165 1.1672 5 8 2.6477 3.1599 1.1672 6 6 1.9912 1.3064 2.4723 7 6 2.3221 2.2440 3.6353 8 6 2.0709 1.5336 4.9403 9 1 1.7108 0.5154 4.9404 10 6 2.3007 2.1836 6.1344 11 7 2.0763 1.5655 7.2734 12 14 2.9228 3.9449 6.1344 13 1 1.7675 4.8779 6.1347 14 1 3.7480 4.1785 7.3467 15 1 3.7475 4.1786 4.9217 16 6 2.2626 2.0718 -1.2687 17 1 2.0665 1.4031 -2.1069 18 6 1.3796 3.3325 -1.3711 19 6 2.3723 4.5097 -1.4802 20 7 3.6157 3.9021 -2.0204 21 6 4.7834 4.7438 -1.7271 22 6 3.7145 2.5933 -1.3245 23 1 -0.3632 0.5139 -0.8900 24 1 -0.3633 -1.0276 -0.0005 25 1 -0.3633 0.5139 0.8899 26 1 1.8934 -0.5139 -0.8899 27 1 1.8933 -0.5139 0.8900 28 1 2.6210 0.4187 2.5303 29 1 0.9431 1.0127 2.5298 30 1 1.6919 3.1314 3.5770 31 1 3.3701 2.5381 3.5780 32 1 2.2384 2.0226 8.1134 33 1 0.7514 3.2834 -2.2605 34 1 0.7642 3.4373 -0.4777 35 1 1.9905 5.2668 -2.1651 36 1 2.5555 4.9448 -0.4977 37 1 4.8905 4.8535 -0.6480 38 1 5.6797 4.2769 -2.1355 39 1 4.6465 5.7257 -2.1803 40 1 4.1093 2.7272 -0.3174 41 1 4.3434 1.9075 -1.8922 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597946352.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:48:05 Heat of formation + Delta-G solvation = -33.305438 kcal Electronic energy + Delta-G solvation = -19931.132186 eV Core-core repulsion = 17038.929076 eV Total energy + Delta-G solvation = -2892.203109 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 254.174 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.35019 -37.83193 -35.66597 -33.56376 -32.09774 -31.04941 -29.97702 -28.31338 -26.31491 -25.14719 -23.30103 -21.87655 -21.12126 -20.33796 -18.38188 -17.16611 -16.39024 -16.25507 -15.55638 -15.08277 -14.52664 -14.17139 -14.08635 -13.78907 -13.48895 -13.39379 -13.02208 -12.79440 -12.59685 -12.03123 -11.97871 -11.72987 -11.46011 -11.43575 -11.33735 -11.28509 -11.00790 -10.91497 -10.73853 -10.12651 -10.04276 -9.78611 -9.21280 -9.12787 -8.53698 -8.48820 -8.40796 -6.04608 -4.03099 3.06401 3.13347 3.35623 3.42380 3.52704 4.19047 4.49006 4.59309 4.72179 4.89151 5.06659 5.17292 5.23333 5.30927 5.34945 5.43578 5.46215 5.51230 5.55909 5.67661 5.79691 5.81383 5.87414 5.90683 5.99559 6.05249 6.08468 6.11944 6.16797 6.19686 6.62374 6.68662 6.94088 6.99778 7.34662 7.41980 7.63703 7.78459 8.48390 8.63236 8.98664 9.58631 11.08305 Molecular weight = 254.17amu Principal moments of inertia in cm(-1) A = 0.021160 B = 0.006317 C = 0.005193 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1322.922096 B = 4431.672307 C = 5390.367869 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.106 3.894 3 N -0.620 5.620 4 C 0.512 3.488 5 O -0.534 6.534 6 C -0.122 4.122 7 C 0.003 3.997 8 C -0.524 4.524 9 H 0.072 0.928 10 C 0.069 3.931 11 N -0.903 5.903 12 Si 0.877 3.123 13 H -0.277 1.277 14 H -0.288 1.288 15 H -0.262 1.262 16 C 0.147 3.853 17 H 0.092 0.908 18 C -0.126 4.126 19 C 0.037 3.963 20 N -0.514 5.514 21 C 0.015 3.985 22 C 0.019 3.981 23 H 0.054 0.946 24 H 0.065 0.935 25 H 0.062 0.938 26 H 0.074 0.926 27 H 0.085 0.915 28 H 0.084 0.916 29 H 0.084 0.916 30 H 0.018 0.982 31 H 0.022 0.978 32 H 0.263 0.737 33 H 0.068 0.932 34 H 0.075 0.925 35 H 0.072 0.928 36 H 0.059 0.941 37 H 0.034 0.966 38 H 0.064 0.936 39 H 0.065 0.935 40 H 0.069 0.931 41 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.266 -0.572 -19.870 19.880 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C -0.017 4.017 3 N -0.355 5.355 4 C 0.303 3.697 5 O -0.410 6.410 6 C -0.162 4.162 7 C -0.035 4.035 8 C -0.562 4.562 9 H 0.090 0.910 10 C -0.132 4.132 11 N -0.542 5.542 12 Si 0.704 3.296 13 H -0.203 1.203 14 H -0.214 1.214 15 H -0.186 1.186 16 C 0.043 3.957 17 H 0.111 0.889 18 C -0.165 4.165 19 C -0.091 4.091 20 N -0.238 5.238 21 C -0.134 4.134 22 C -0.109 4.109 23 H 0.073 0.927 24 H 0.084 0.916 25 H 0.081 0.919 26 H 0.092 0.908 27 H 0.103 0.897 28 H 0.102 0.898 29 H 0.103 0.897 30 H 0.036 0.964 31 H 0.040 0.960 32 H 0.073 0.927 33 H 0.087 0.913 34 H 0.094 0.906 35 H 0.090 0.910 36 H 0.078 0.922 37 H 0.053 0.947 38 H 0.083 0.917 39 H 0.084 0.916 40 H 0.087 0.913 41 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -0.042 0.014 -20.248 20.248 hybrid contribution 0.305 0.905 1.009 1.389 sum 0.264 0.920 -19.239 19.263 Atomic orbital electron populations 1.22226 0.95978 1.02180 1.02650 1.21572 0.94501 0.82348 1.03265 1.48309 1.67304 1.14363 1.05489 1.21474 0.75852 0.86826 0.85556 1.90611 1.44742 1.18151 1.87521 1.21725 1.02783 1.00477 0.91175 1.19353 0.97249 0.94642 0.92232 1.21112 1.44975 1.01237 0.88873 0.90967 1.24967 0.94802 0.97956 0.95468 1.69914 1.49293 1.37599 0.97420 0.86802 0.79596 0.85425 0.77751 1.20286 1.21441 1.18639 1.21652 0.94310 0.93973 0.85803 0.88950 1.22583 0.97753 0.94185 1.01993 1.23037 0.90182 0.96761 0.99136 1.65402 1.02796 1.03276 1.52301 1.22464 0.93609 0.97600 0.99759 1.23476 0.96730 0.91722 0.99022 0.92658 0.91606 0.91854 0.90790 0.89662 0.89800 0.89735 0.96414 0.96003 0.92726 0.91307 0.90643 0.90992 0.92216 0.94737 0.91671 0.91614 0.91307 0.90714 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.69 10.24 37.16 0.38 -1.31 16 2 C 0.11 1.11 5.92 -4.04 -0.02 1.09 16 3 N -0.62 -8.45 2.46 -164.54 -0.40 -8.85 16 4 C 0.51 9.15 6.58 -10.99 -0.07 9.08 16 5 O -0.53 -11.14 11.84 5.55 0.07 -11.07 16 6 C -0.12 -2.36 4.19 -27.88 -0.12 -2.47 16 7 C 0.00 0.08 3.33 -27.89 -0.09 -0.02 16 8 C -0.52 -14.95 9.66 -34.44 -0.33 -15.28 16 9 H 0.07 2.15 7.99 -52.49 -0.42 1.73 16 10 C 0.07 2.05 5.47 -17.82 -0.10 1.95 16 11 N -0.90 -27.98 13.96 55.43 0.77 -27.21 16 12 Si 0.88 22.64 27.47 -169.99 -4.67 17.97 16 13 H -0.28 -7.06 7.11 56.52 0.40 -6.65 16 14 H -0.29 -7.29 7.11 56.52 0.40 -6.89 16 15 H -0.26 -6.74 6.54 56.52 0.37 -6.37 16 16 C 0.15 1.85 3.53 -66.55 -0.23 1.61 16 17 H 0.09 0.95 7.83 -51.93 -0.41 0.55 16 18 C -0.13 -1.63 6.01 -25.35 -0.15 -1.79 16 19 C 0.04 0.50 6.06 -2.18 -0.01 0.49 16 20 N -0.51 -6.89 5.66 -238.24 -1.35 -8.24 16 21 C 0.01 0.18 9.53 60.06 0.57 0.75 16 22 C 0.02 0.27 5.76 -2.19 -0.01 0.25 16 23 H 0.05 0.52 8.14 -51.93 -0.42 0.09 16 24 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 25 H 0.06 0.74 7.22 -51.93 -0.37 0.36 16 26 H 0.07 0.61 7.92 -51.93 -0.41 0.20 16 27 H 0.09 0.92 6.44 -51.93 -0.33 0.58 16 28 H 0.08 1.52 7.40 -51.93 -0.38 1.13 16 29 H 0.08 1.54 7.18 -51.93 -0.37 1.16 16 30 H 0.02 0.45 7.53 -51.93 -0.39 0.06 16 31 H 0.02 0.57 7.16 -51.93 -0.37 0.19 16 32 H 0.26 7.65 8.31 -40.82 -0.34 7.31 16 33 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 34 H 0.07 1.13 7.21 -51.93 -0.37 0.76 16 35 H 0.07 0.87 8.14 -51.93 -0.42 0.44 16 36 H 0.06 0.98 7.06 -51.93 -0.37 0.61 16 37 H 0.03 0.48 7.97 -51.93 -0.41 0.07 16 38 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 39 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 40 H 0.07 1.16 5.71 -51.93 -0.30 0.86 16 41 H 0.07 0.91 8.14 -51.93 -0.42 0.48 16 LS Contribution 318.35 15.07 4.80 4.80 Total: -1.00 -32.49 318.35 -8.03 -40.52 By element: Atomic # 1 Polarization: 4.75 SS G_CDS: -7.04 Total: -2.29 kcal Atomic # 6 Polarization: -5.43 SS G_CDS: -0.20 Total: -5.63 kcal Atomic # 7 Polarization: -43.32 SS G_CDS: -0.98 Total: -44.30 kcal Atomic # 8 Polarization: -11.14 SS G_CDS: 0.07 Total: -11.07 kcal Atomic # 14 Polarization: 22.64 SS G_CDS: -4.67 Total: 17.97 kcal Total LS contribution 4.80 Total: 4.80 kcal Total: -32.49 -8.03 -40.52 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597946352.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.210 kcal (2) G-P(sol) polarization free energy of solvation -32.489 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.280 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.026 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.515 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.305 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds