Wall clock time and date at job start Mon Mar 30 2020 04:38:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46897 * 109.47123 * 2 1 4 4 C 1.46897 * 111.00315 * 169.09889 * 3 2 1 5 5 C 1.50699 * 109.47596 * 187.70958 * 4 3 2 6 6 H 1.08004 * 119.99917 * 354.72634 * 5 4 3 7 7 C 1.37877 * 120.00446 * 174.73804 * 5 4 3 8 8 N 1.31510 * 120.00153 * 176.39163 * 7 5 4 9 9 Si 1.86800 * 119.99925 * 356.38145 * 7 5 4 10 10 H 1.48497 * 109.47061 * 91.98537 * 9 7 5 11 11 H 1.48498 * 109.47119 * 211.98861 * 9 7 5 12 12 H 1.48510 * 109.47012 * 331.98734 * 9 7 5 13 13 N 1.45408 * 111.00037 * 293.04829 * 3 2 1 14 14 C 1.46897 * 110.99910 * 86.20040 * 13 3 2 15 15 C 1.46901 * 110.99832 * 322.24964 * 13 3 2 16 16 C 1.50698 * 109.47501 * 295.06537 * 15 13 3 17 17 C 1.29987 * 118.57031 * 112.96581 * 16 15 13 18 18 C 1.50378 * 122.51251 * 180.43354 * 17 16 15 19 19 C 1.53129 * 109.59644 * 343.37678 * 18 17 16 20 20 O 1.43304 * 108.41416 * 47.82514 * 19 18 17 21 21 C 1.42896 * 113.02413 * 291.85655 * 20 19 18 22 22 H 1.09006 * 109.47041 * 196.40094 * 1 2 3 23 23 H 1.09008 * 109.47179 * 316.39592 * 1 2 3 24 24 H 1.08993 * 109.47587 * 76.39727 * 1 2 3 25 25 H 1.09002 * 109.46918 * 240.00011 * 2 1 3 26 26 H 1.08997 * 109.47440 * 119.99975 * 2 1 3 27 27 H 1.09004 * 109.46956 * 307.70701 * 4 3 2 28 28 H 1.09002 * 109.47469 * 67.70102 * 4 3 2 29 29 H 0.97002 * 120.00444 * 179.97438 * 8 7 5 30 30 H 1.09000 * 109.47454 * 286.44333 * 14 13 3 31 31 H 1.09009 * 109.46886 * 46.44676 * 14 13 3 32 32 H 1.08994 * 109.47190 * 166.43907 * 14 13 3 33 33 H 1.09000 * 109.47292 * 175.06242 * 15 13 3 34 34 H 1.09005 * 109.46984 * 55.06341 * 15 13 3 35 35 H 1.08000 * 118.74016 * 0.46181 * 17 16 15 36 36 H 1.09000 * 109.45336 * 223.33743 * 18 17 16 37 37 H 1.08995 * 109.42992 * 103.40259 * 18 17 16 38 38 H 1.09002 * 109.68398 * 167.56086 * 19 18 17 39 39 H 1.08997 * 109.68251 * 288.08235 * 19 18 17 40 40 H 1.09000 * 109.32528 * 289.92210 * 21 20 19 41 41 H 1.08998 * 109.25985 * 170.27190 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 3.4647 1.4325 0.2593 5 6 3.8960 2.8651 0.4398 6 1 3.1878 3.6658 0.2850 7 6 5.1945 3.1538 0.8022 8 7 5.5899 4.4050 0.8905 9 14 6.3923 1.7678 1.1680 10 1 7.1258 1.4073 -0.0718 11 1 7.3593 2.2100 2.2046 12 1 5.6437 0.5842 1.6622 13 7 1.6922 2.0534 -1.2491 14 6 0.3463 2.6394 -1.1956 15 6 1.8212 1.1341 -2.3877 16 6 3.2630 0.7233 -2.5408 17 6 3.5839 -0.5156 -2.3134 18 6 4.9960 -1.0194 -2.4303 19 6 5.8359 -0.0140 -3.2231 20 8 5.5927 1.2955 -2.6944 21 6 4.2669 1.7637 -2.9492 22 1 -0.3633 -0.9859 0.2902 23 1 -0.3634 0.7442 0.7088 24 1 -0.3634 0.2417 -0.9987 25 1 1.8933 -0.5138 -0.8900 26 1 1.8933 -0.5138 0.8899 27 1 3.6901 0.8685 1.1645 28 1 3.9998 0.9953 -0.5837 29 1 6.5034 4.6082 1.1458 30 1 -0.3983 1.8460 -1.2605 31 1 0.2218 3.1786 -0.2564 32 1 0.2166 3.3285 -2.0300 33 1 1.4871 1.6331 -3.2973 34 1 1.2082 0.2500 -2.2121 35 1 2.8066 -1.2098 -2.0300 36 1 4.9973 -1.9798 -2.9458 37 1 5.4210 -1.1417 -1.4341 38 1 6.8933 -0.2595 -3.1234 39 1 5.5495 -0.0446 -4.2743 40 1 4.1568 1.9741 -4.0130 41 1 4.0926 2.6769 -2.3802 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000697114746.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:38:18 Heat of formation + Delta-G solvation = 37.839195 kcal Electronic energy + Delta-G solvation = -21107.250815 eV Core-core repulsion = 18218.132769 eV Total energy + Delta-G solvation = -2889.118047 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 254.174 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -39.66803 -37.76917 -33.67701 -32.86201 -32.16926 -30.98399 -30.33536 -26.85903 -26.12267 -25.06691 -23.26438 -22.27061 -21.62999 -19.68849 -17.84059 -16.66570 -16.37557 -15.93564 -15.53116 -14.94640 -14.77283 -14.20651 -13.84791 -13.40072 -13.29989 -12.75962 -12.62699 -12.43688 -12.24328 -12.09025 -11.87097 -11.83865 -11.71115 -11.51632 -11.03420 -10.75482 -10.70955 -10.47579 -10.11449 -10.05103 -9.60417 -9.20993 -9.04827 -8.70404 -8.29759 -7.75506 -7.35252 -5.79673 -3.71377 2.39370 3.49028 3.52663 3.57327 4.07031 4.36457 4.67121 4.91818 5.00368 5.12444 5.21765 5.32649 5.40113 5.53647 5.54803 5.57652 5.64405 5.69460 5.81183 5.81864 5.90039 5.91948 6.02250 6.12839 6.18052 6.18667 6.26743 6.43458 6.50515 6.56123 6.75987 6.97976 7.19047 7.24602 7.54731 7.66034 7.79881 7.96313 8.42610 8.91741 9.35977 9.84790 11.34055 Molecular weight = 254.17amu Principal moments of inertia in cm(-1) A = 0.015981 B = 0.011949 C = 0.008821 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1751.628774 B = 2342.675531 C = 3173.311897 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.011 4.011 3 N -0.345 5.345 4 C 0.150 3.850 5 C -0.476 4.476 6 H 0.082 0.918 7 C 0.071 3.929 8 N -0.907 5.907 9 Si 0.862 3.138 10 H -0.268 1.268 11 H -0.294 1.294 12 H -0.274 1.274 13 N -0.346 5.346 14 C 0.028 3.972 15 C 0.045 3.955 16 C -0.116 4.116 17 C -0.176 4.176 18 C -0.118 4.118 19 C 0.054 3.946 20 O -0.361 6.361 21 C 0.099 3.901 22 H 0.048 0.952 23 H 0.066 0.934 24 H 0.050 0.950 25 H 0.049 0.951 26 H 0.070 0.930 27 H 0.023 0.977 28 H 0.021 0.979 29 H 0.258 0.742 30 H 0.025 0.975 31 H 0.078 0.922 32 H 0.062 0.938 33 H 0.079 0.921 34 H 0.046 0.954 35 H 0.105 0.895 36 H 0.073 0.927 37 H 0.077 0.923 38 H 0.089 0.911 39 H 0.047 0.953 40 H 0.048 0.952 41 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.615 -10.756 -8.667 15.315 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.141 4.141 3 N -0.160 5.160 4 C 0.024 3.976 5 C -0.514 4.514 6 H 0.100 0.900 7 C -0.129 4.129 8 N -0.547 5.547 9 Si 0.690 3.310 10 H -0.193 1.193 11 H -0.220 1.220 12 H -0.199 1.199 13 N -0.159 5.159 14 C -0.120 4.120 15 C -0.083 4.083 16 C -0.116 4.116 17 C -0.195 4.195 18 C -0.156 4.156 19 C -0.023 4.023 20 O -0.278 6.278 21 C 0.023 3.977 22 H 0.067 0.933 23 H 0.085 0.915 24 H 0.069 0.931 25 H 0.067 0.933 26 H 0.089 0.911 27 H 0.041 0.959 28 H 0.038 0.962 29 H 0.068 0.932 30 H 0.043 0.957 31 H 0.096 0.904 32 H 0.080 0.920 33 H 0.097 0.903 34 H 0.064 0.936 35 H 0.123 0.877 36 H 0.091 0.909 37 H 0.096 0.904 38 H 0.107 0.893 39 H 0.065 0.935 40 H 0.066 0.934 41 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -6.220 -9.877 -8.196 14.263 hybrid contribution 0.298 -2.179 -0.324 2.223 sum -5.922 -12.056 -8.521 15.907 Atomic orbital electron populations 1.22056 0.95964 1.01269 1.01480 1.22945 0.95644 0.93824 1.01648 1.66215 1.19691 1.11051 1.19088 1.20569 0.82036 0.99438 0.95526 1.20843 0.95854 0.90737 1.43997 0.89956 1.24768 0.97670 0.94763 0.95691 1.69890 1.17460 1.17328 1.50072 0.87023 0.81961 0.83497 0.78495 1.19301 1.22011 1.19901 1.65879 1.26221 1.27545 0.96278 1.22570 0.88255 0.98304 1.02897 1.21755 0.93112 0.97026 0.96450 1.21495 0.96428 0.95060 0.98661 1.21962 0.97088 0.96249 1.04211 1.21010 0.93928 0.98870 1.01751 1.22573 0.99622 0.84259 0.95871 1.88328 1.29852 1.30880 1.78779 1.21483 0.79842 0.97339 0.99034 0.93257 0.91491 0.93106 0.93280 0.91118 0.95946 0.96179 0.93174 0.95654 0.90360 0.91967 0.90291 0.93610 0.87705 0.90861 0.90447 0.89324 0.93471 0.93379 0.84853 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.11 8.30 37.16 0.31 -1.80 16 2 C -0.01 -0.19 5.03 -3.83 -0.02 -0.21 16 3 N -0.35 -7.17 4.57 -115.06 -0.53 -7.70 16 4 C 0.15 3.67 3.67 -4.98 -0.02 3.65 16 5 C -0.48 -13.63 9.21 -34.44 -0.32 -13.95 16 6 H 0.08 2.60 7.99 -52.48 -0.42 2.18 16 7 C 0.07 2.11 5.47 -17.82 -0.10 2.01 16 8 N -0.91 -28.55 13.96 55.43 0.77 -27.78 16 9 Si 0.86 22.58 27.64 -169.99 -4.70 17.88 16 10 H -0.27 -6.99 7.11 56.52 0.40 -6.59 16 11 H -0.29 -7.70 7.11 56.52 0.40 -7.30 16 12 H -0.27 -6.93 6.32 56.52 0.36 -6.58 16 13 N -0.35 -6.52 4.32 -122.42 -0.53 -7.05 16 14 C 0.03 0.45 9.13 60.06 0.55 1.00 16 15 C 0.05 0.73 4.56 -4.98 -0.02 0.71 16 16 C -0.12 -1.99 3.07 -101.01 -0.31 -2.30 16 17 C -0.18 -2.82 7.54 -35.90 -0.27 -3.09 16 18 C -0.12 -1.77 6.36 -27.97 -0.18 -1.95 16 19 C 0.05 0.84 6.89 37.22 0.26 1.10 16 20 O -0.36 -7.39 10.76 -35.23 -0.38 -7.77 16 21 C 0.10 1.88 6.16 35.78 0.22 2.10 16 22 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 23 H 0.07 0.99 8.03 -51.92 -0.42 0.57 16 24 H 0.05 0.67 4.95 -51.93 -0.26 0.41 16 25 H 0.05 0.81 2.62 -51.93 -0.14 0.67 16 26 H 0.07 1.24 7.94 -51.93 -0.41 0.82 16 27 H 0.02 0.59 6.50 -51.93 -0.34 0.25 16 28 H 0.02 0.49 3.57 -51.93 -0.19 0.31 16 29 H 0.26 7.74 8.31 -40.82 -0.34 7.40 16 30 H 0.03 0.35 4.97 -51.93 -0.26 0.09 16 31 H 0.08 1.35 8.14 -51.92 -0.42 0.92 16 32 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 33 H 0.08 1.13 8.09 -51.93 -0.42 0.71 16 34 H 0.05 0.69 4.54 -51.93 -0.24 0.45 16 35 H 0.11 1.55 5.98 -52.49 -0.31 1.24 16 36 H 0.07 0.87 8.14 -51.93 -0.42 0.44 16 37 H 0.08 1.27 8.14 -51.93 -0.42 0.85 16 38 H 0.09 1.25 8.14 -51.93 -0.42 0.83 16 39 H 0.05 0.63 8.10 -51.93 -0.42 0.21 16 40 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 41 H 0.13 3.02 7.77 -51.93 -0.40 2.61 16 LS Contribution 303.53 15.07 4.57 4.57 Total: -1.00 -32.03 303.53 -7.04 -39.07 By element: Atomic # 1 Polarization: 7.86 SS G_CDS: -6.36 Total: 1.50 kcal Atomic # 6 Polarization: -12.83 SS G_CDS: 0.10 Total: -12.73 kcal Atomic # 7 Polarization: -42.25 SS G_CDS: -0.28 Total: -42.53 kcal Atomic # 8 Polarization: -7.39 SS G_CDS: -0.38 Total: -7.77 kcal Atomic # 14 Polarization: 22.58 SS G_CDS: -4.70 Total: 17.88 kcal Total LS contribution 4.57 Total: 4.57 kcal Total: -32.03 -7.04 -39.07 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000697114746.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.911 kcal (2) G-P(sol) polarization free energy of solvation -32.033 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.878 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.039 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.072 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.839 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds