Wall clock time and date at job start Mon Mar 30 2020 03:52:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53000 * 109.47392 * 2 1 4 4 C 1.53000 * 109.47092 * 119.99614 * 2 1 3 5 5 N 1.46498 * 109.47406 * 174.99939 * 4 2 1 6 6 C 1.34780 * 120.00370 * 180.02562 * 5 4 2 7 7 O 1.21273 * 119.99818 * 359.97438 * 6 5 4 8 8 C 1.50694 * 119.99847 * 180.02562 * 6 5 4 9 9 H 1.08996 * 109.47474 * 299.99380 * 8 6 5 10 10 C 1.53002 * 109.47391 * 59.99913 * 8 6 5 11 11 N 1.46501 * 109.46997 * 179.97438 * 8 6 5 12 12 C 1.36933 * 120.00431 * 121.56002 * 11 8 6 13 13 H 1.07994 * 120.00209 * 212.87897 * 12 11 8 14 14 C 1.38812 * 120.00067 * 32.87649 * 12 11 8 15 15 N 1.31622 * 119.99870 * 17.33093 * 14 12 11 16 16 Si 1.86798 * 120.00447 * 197.33134 * 14 12 11 17 17 H 1.48495 * 109.47205 * 89.99946 * 16 14 12 18 18 H 1.48505 * 109.47174 * 210.00040 * 16 14 12 19 19 H 1.48496 * 109.47126 * 329.99882 * 16 14 12 20 20 C 1.46503 * 119.99787 * 301.56183 * 11 8 6 21 21 C 1.52999 * 117.49840 * 193.78020 * 20 11 8 22 22 C 1.52997 * 117.49964 * 125.12380 * 20 11 8 23 23 H 1.08995 * 109.47320 * 300.00288 * 1 2 3 24 24 H 1.09000 * 109.46988 * 60.00291 * 1 2 3 25 25 H 1.09008 * 109.47024 * 180.02562 * 1 2 3 26 26 H 1.09004 * 109.47555 * 239.99684 * 2 1 3 27 27 H 1.08999 * 109.46896 * 300.00365 * 3 2 1 28 28 H 1.09004 * 109.47028 * 59.99362 * 3 2 1 29 29 H 1.08995 * 109.47567 * 179.97438 * 3 2 1 30 30 H 1.09008 * 109.46802 * 55.00429 * 4 2 1 31 31 H 1.08999 * 109.47356 * 295.00323 * 4 2 1 32 32 H 0.97005 * 119.99961 * 0.02562 * 5 4 2 33 33 H 1.08999 * 109.47015 * 59.99799 * 10 8 6 34 34 H 1.09006 * 109.46973 * 179.97438 * 10 8 6 35 35 H 1.09000 * 109.47015 * 299.99690 * 10 8 6 36 36 H 0.96999 * 120.00405 * 184.98235 * 15 14 12 37 37 H 1.08993 * 115.54941 * 339.44667 * 20 11 8 38 38 H 1.09006 * 117.50146 * 359.97438 * 21 20 11 39 39 H 1.09003 * 117.49927 * 145.01691 * 21 20 11 40 40 H 1.09007 * 117.49741 * 214.98059 * 22 20 11 41 41 H 1.09004 * 117.49868 * 359.97438 * 22 20 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7212 1.2493 5 7 3.5000 -0.8263 1.1907 6 6 4.1730 -1.4291 2.1909 7 8 3.5699 -1.8840 3.1396 8 6 5.6748 -1.5367 2.1307 9 1 5.9636 -2.0991 1.2428 10 6 6.2845 -0.1349 2.0672 11 7 6.1632 -2.2274 3.3269 12 6 6.8917 -3.3801 3.2025 13 1 6.8120 -4.1529 3.9527 14 6 7.7328 -3.5554 2.1122 15 7 8.0984 -2.5178 1.3896 16 14 8.3457 -5.2638 1.6705 17 1 7.3951 -5.9015 0.7246 18 1 9.6833 -5.1605 1.0337 19 1 8.4461 -6.0874 2.9020 20 6 5.8720 -1.6847 4.6562 21 6 6.6627 -2.2489 5.8383 22 6 5.1859 -2.6106 5.6625 23 1 -0.3634 0.5138 0.8899 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 1.8934 -0.5139 -0.8900 27 1 1.6766 1.9563 -0.8900 28 1 1.6766 1.9564 0.8900 29 1 3.1300 1.4425 0.0005 30 1 1.6053 -1.7198 1.2952 31 1 1.7516 -0.1582 2.1370 32 1 3.9824 -0.4622 0.4320 33 1 5.9958 0.4275 2.9552 34 1 7.3710 -0.2128 2.0242 35 1 5.9213 0.3793 1.1774 36 1 8.6264 -2.6480 0.5864 37 1 5.6096 -0.6272 4.6851 38 1 7.3993 -3.0241 5.6270 39 1 6.9202 -1.5626 6.6451 40 1 4.4722 -2.1622 6.3537 41 1 4.9507 -3.6235 5.3354 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000706722114.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:52:23 Heat of formation + Delta-G solvation = -1.800036 kcal Electronic energy + Delta-G solvation = -19929.996580 eV Core-core repulsion = 17039.159648 eV Total energy + Delta-G solvation = -2890.836933 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 254.174 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -39.12687 -37.02546 -36.04137 -33.72798 -32.71976 -31.28552 -28.66871 -27.26754 -25.94773 -24.22860 -22.75876 -21.16289 -20.36062 -20.15328 -19.06072 -16.83645 -16.08597 -15.62709 -15.15822 -14.82980 -14.34026 -14.10816 -13.77538 -13.51727 -13.04837 -12.65846 -12.57426 -12.39266 -12.13113 -11.95583 -11.55809 -11.20071 -11.16394 -10.97445 -10.90973 -10.80727 -10.73642 -10.58332 -10.43809 -10.21455 -9.86382 -9.47702 -9.13388 -8.68969 -8.46806 -8.38921 -6.55879 -5.86089 -3.35911 3.34943 3.42750 3.45174 3.63493 3.84332 4.45317 4.76364 4.83835 4.99936 5.10845 5.24674 5.40482 5.50203 5.53588 5.64302 5.74010 5.74919 5.95464 5.98130 6.03482 6.05901 6.22415 6.23650 6.29282 6.31229 6.45530 6.48720 6.63929 6.67061 6.80649 7.05079 7.15937 7.23175 7.31167 7.44288 7.79592 8.18297 8.43072 9.04197 9.22182 9.76551 10.31012 11.17118 Molecular weight = 254.17amu Principal moments of inertia in cm(-1) A = 0.020948 B = 0.006475 C = 0.005686 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1336.293151 B = 4323.616788 C = 4923.106239 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.109 4.109 3 C -0.147 4.147 4 C 0.125 3.875 5 N -0.744 5.744 6 C 0.486 3.514 7 O -0.533 6.533 8 C 0.178 3.822 9 H 0.117 0.883 10 C -0.140 4.140 11 N -0.532 5.532 12 C -0.248 4.248 13 H 0.067 0.933 14 C 0.008 3.992 15 N -0.895 5.895 16 Si 0.901 3.099 17 H -0.287 1.287 18 H -0.290 1.290 19 H -0.277 1.277 20 C 0.146 3.854 21 C -0.206 4.206 22 C -0.205 4.205 23 H 0.056 0.944 24 H 0.056 0.944 25 H 0.056 0.944 26 H 0.075 0.925 27 H 0.053 0.947 28 H 0.055 0.945 29 H 0.058 0.942 30 H 0.058 0.942 31 H 0.058 0.942 32 H 0.394 0.606 33 H 0.031 0.969 34 H 0.087 0.913 35 H 0.034 0.966 36 H 0.255 0.745 37 H 0.083 0.917 38 H 0.096 0.904 39 H 0.072 0.928 40 H 0.069 0.931 41 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.473 7.149 -3.849 12.476 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.128 4.128 3 C -0.205 4.205 4 C 0.001 3.999 5 N -0.399 5.399 6 C 0.272 3.728 7 O -0.408 6.408 8 C 0.067 3.933 9 H 0.135 0.865 10 C -0.199 4.199 11 N -0.248 5.248 12 C -0.378 4.378 13 H 0.085 0.915 14 C -0.191 4.191 15 N -0.538 5.538 16 Si 0.730 3.270 17 H -0.214 1.214 18 H -0.216 1.216 19 H -0.202 1.202 20 C 0.037 3.963 21 C -0.245 4.245 22 C -0.246 4.246 23 H 0.075 0.925 24 H 0.075 0.925 25 H 0.075 0.925 26 H 0.093 0.907 27 H 0.072 0.928 28 H 0.074 0.926 29 H 0.077 0.923 30 H 0.076 0.924 31 H 0.077 0.923 32 H 0.228 0.772 33 H 0.050 0.950 34 H 0.106 0.894 35 H 0.053 0.947 36 H 0.065 0.935 37 H 0.100 0.900 38 H 0.115 0.885 39 H 0.090 0.910 40 H 0.087 0.913 41 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -9.708 6.805 -3.255 12.294 hybrid contribution 0.396 -0.745 -0.684 1.086 sum -9.311 6.060 -3.939 11.787 Atomic orbital electron populations 1.21757 0.94559 1.01975 1.01849 1.21355 0.96263 0.96739 0.98410 1.21851 1.01438 0.95551 1.01625 1.21253 0.81829 0.99810 0.97027 1.46367 1.06518 1.62033 1.24985 1.22991 0.92783 0.75743 0.81277 1.90603 1.70596 1.46439 1.33148 1.20220 0.84466 0.94658 0.93990 0.86541 1.22058 1.04285 0.95392 0.98183 1.43017 1.57530 1.26477 0.97727 1.19100 1.16143 0.93269 1.09284 0.91503 1.25092 0.96067 0.97288 1.00630 1.70038 1.38865 1.27691 1.17231 0.86310 0.77758 0.84382 0.78527 1.21418 1.21631 1.20246 1.20744 0.99594 0.93324 0.82648 1.23208 0.95087 1.04823 1.01358 1.23142 0.93482 1.02477 1.05489 0.92500 0.92499 0.92491 0.90707 0.92776 0.92594 0.92296 0.92355 0.92327 0.77157 0.94967 0.89367 0.94656 0.93538 0.89957 0.88534 0.90995 0.91281 0.89838 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.29 9.19 37.16 0.34 -0.95 16 2 C -0.11 -1.14 2.96 -90.62 -0.27 -1.41 16 3 C -0.15 -1.43 9.07 37.16 0.34 -1.09 16 4 C 0.13 1.77 5.06 -4.04 -0.02 1.75 16 5 N -0.74 -12.10 5.18 -60.30 -0.31 -12.41 16 6 C 0.49 10.25 7.05 -10.99 -0.08 10.17 16 7 O -0.53 -12.91 14.88 5.56 0.08 -12.83 16 8 C 0.18 4.03 2.19 -69.08 -0.15 3.88 16 9 H 0.12 2.90 6.09 -51.93 -0.32 2.58 16 10 C -0.14 -2.82 8.96 37.16 0.33 -2.49 16 11 N -0.53 -13.38 2.50 -159.46 -0.40 -13.78 16 12 C -0.25 -6.73 8.27 -15.06 -0.12 -6.85 16 13 H 0.07 1.86 6.98 -52.49 -0.37 1.49 16 14 C 0.01 0.22 4.85 -17.43 -0.08 0.14 16 15 N -0.89 -23.93 10.45 55.49 0.58 -23.35 16 16 Si 0.90 21.29 29.59 -169.99 -5.03 16.26 16 17 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 18 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 19 H -0.28 -6.55 7.11 56.52 0.40 -6.14 16 20 C 0.15 3.38 4.75 -67.93 -0.32 3.06 16 21 C -0.21 -4.41 9.79 -26.70 -0.26 -4.67 16 22 C -0.21 -4.51 9.72 -26.70 -0.26 -4.77 16 23 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 24 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 25 H 0.06 0.51 8.14 -51.92 -0.42 0.09 16 26 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 27 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 28 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 29 H 0.06 0.60 7.18 -51.93 -0.37 0.22 16 30 H 0.06 0.90 8.14 -51.92 -0.42 0.47 16 31 H 0.06 0.88 8.14 -51.93 -0.42 0.45 16 32 H 0.39 5.57 7.07 -40.82 -0.29 5.28 16 33 H 0.03 0.62 6.98 -51.93 -0.36 0.26 16 34 H 0.09 2.01 7.25 -51.93 -0.38 1.63 16 35 H 0.03 0.59 7.56 -51.93 -0.39 0.20 16 36 H 0.25 6.60 8.32 -40.82 -0.34 6.26 16 37 H 0.08 1.84 7.03 -51.93 -0.37 1.48 16 38 H 0.10 2.22 6.84 -51.93 -0.35 1.86 16 39 H 0.07 1.35 8.14 -51.93 -0.42 0.93 16 40 H 0.07 1.39 8.14 -51.93 -0.42 0.96 16 41 H 0.08 1.98 8.06 -51.93 -0.42 1.56 16 LS Contribution 326.56 15.07 4.92 4.92 Total: -1.00 -29.42 326.56 -7.69 -37.11 By element: Atomic # 1 Polarization: 14.29 SS G_CDS: -6.98 Total: 7.31 kcal Atomic # 6 Polarization: -2.67 SS G_CDS: -0.56 Total: -3.23 kcal Atomic # 7 Polarization: -49.41 SS G_CDS: -0.13 Total: -49.54 kcal Atomic # 8 Polarization: -12.91 SS G_CDS: 0.08 Total: -12.83 kcal Atomic # 14 Polarization: 21.29 SS G_CDS: -5.03 Total: 16.26 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -29.42 -7.69 -37.11 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000706722114.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.310 kcal (2) G-P(sol) polarization free energy of solvation -29.418 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.893 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.693 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.110 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.800 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds