Wall clock time and date at job start Mon Mar 30 2020 03:52:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53000 * 109.47392 * 2 1 4 4 C 1.53000 * 109.47092 * 119.99614 * 2 1 3 5 5 N 1.46498 * 109.47406 * 174.99939 * 4 2 1 6 6 C 1.34780 * 120.00370 * 180.02562 * 5 4 2 7 7 O 1.21273 * 119.99818 * 359.97438 * 6 5 4 8 8 C 1.50694 * 119.99847 * 180.02562 * 6 5 4 9 9 H 1.08996 * 109.47474 * 299.99380 * 8 6 5 10 10 C 1.53002 * 109.47391 * 59.99913 * 8 6 5 11 11 N 1.46501 * 109.46997 * 179.97438 * 8 6 5 12 12 C 1.36933 * 120.00431 * 121.56002 * 11 8 6 13 13 H 1.07994 * 120.00209 * 212.87897 * 12 11 8 14 14 C 1.38812 * 120.00067 * 32.87649 * 12 11 8 15 15 N 1.31622 * 119.99870 * 17.33093 * 14 12 11 16 16 Si 1.86798 * 120.00447 * 197.33134 * 14 12 11 17 17 H 1.48495 * 109.47205 * 89.99946 * 16 14 12 18 18 H 1.48505 * 109.47174 * 210.00040 * 16 14 12 19 19 H 1.48496 * 109.47126 * 329.99882 * 16 14 12 20 20 C 1.46503 * 119.99787 * 301.56183 * 11 8 6 21 21 C 1.52999 * 117.49840 * 193.78020 * 20 11 8 22 22 C 1.52997 * 117.49964 * 125.12380 * 20 11 8 23 23 H 1.08995 * 109.47320 * 300.00288 * 1 2 3 24 24 H 1.09000 * 109.46988 * 60.00291 * 1 2 3 25 25 H 1.09008 * 109.47024 * 180.02562 * 1 2 3 26 26 H 1.09004 * 109.47555 * 239.99684 * 2 1 3 27 27 H 1.08999 * 109.46896 * 300.00365 * 3 2 1 28 28 H 1.09004 * 109.47028 * 59.99362 * 3 2 1 29 29 H 1.08995 * 109.47567 * 179.97438 * 3 2 1 30 30 H 1.09008 * 109.46802 * 55.00429 * 4 2 1 31 31 H 1.08999 * 109.47356 * 295.00323 * 4 2 1 32 32 H 0.97005 * 119.99961 * 0.02562 * 5 4 2 33 33 H 1.08999 * 109.47015 * 59.99799 * 10 8 6 34 34 H 1.09006 * 109.46973 * 179.97438 * 10 8 6 35 35 H 1.09000 * 109.47015 * 299.99690 * 10 8 6 36 36 H 0.96999 * 120.00405 * 184.98235 * 15 14 12 37 37 H 1.08993 * 115.54941 * 339.44667 * 20 11 8 38 38 H 1.09006 * 117.50146 * 359.97438 * 21 20 11 39 39 H 1.09003 * 117.49927 * 145.01691 * 21 20 11 40 40 H 1.09007 * 117.49741 * 214.98059 * 22 20 11 41 41 H 1.09004 * 117.49868 * 359.97438 * 22 20 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7212 1.2493 5 7 3.5000 -0.8263 1.1907 6 6 4.1730 -1.4291 2.1909 7 8 3.5699 -1.8840 3.1396 8 6 5.6748 -1.5367 2.1307 9 1 5.9636 -2.0991 1.2428 10 6 6.2845 -0.1349 2.0672 11 7 6.1632 -2.2274 3.3269 12 6 6.8917 -3.3801 3.2025 13 1 6.8120 -4.1529 3.9527 14 6 7.7328 -3.5554 2.1122 15 7 8.0984 -2.5178 1.3896 16 14 8.3457 -5.2638 1.6705 17 1 7.3951 -5.9015 0.7246 18 1 9.6833 -5.1605 1.0337 19 1 8.4461 -6.0874 2.9020 20 6 5.8720 -1.6847 4.6562 21 6 6.6627 -2.2489 5.8383 22 6 5.1859 -2.6106 5.6625 23 1 -0.3634 0.5138 0.8899 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 1.8934 -0.5139 -0.8900 27 1 1.6766 1.9563 -0.8900 28 1 1.6766 1.9564 0.8900 29 1 3.1300 1.4425 0.0005 30 1 1.6053 -1.7198 1.2952 31 1 1.7516 -0.1582 2.1370 32 1 3.9824 -0.4622 0.4320 33 1 5.9958 0.4275 2.9552 34 1 7.3710 -0.2128 2.0242 35 1 5.9213 0.3793 1.1774 36 1 8.6264 -2.6480 0.5864 37 1 5.6096 -0.6272 4.6851 38 1 7.3993 -3.0241 5.6270 39 1 6.9202 -1.5626 6.6451 40 1 4.4722 -2.1622 6.3537 41 1 4.9507 -3.6235 5.3354 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000706722114.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:52:23 Heat of formation + Delta-G solvation = -19.155357 kcal Electronic energy + Delta-G solvation = -19930.749163 eV Core-core repulsion = 17039.159648 eV Total energy + Delta-G solvation = -2891.589516 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 254.174 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.74543 -38.62491 -37.34939 -35.57136 -34.14492 -33.10790 -30.49074 -28.01297 -27.19632 -26.18058 -24.38923 -22.91227 -21.92640 -21.39582 -20.68651 -18.55996 -17.86525 -17.04407 -16.69958 -16.38551 -16.02317 -15.78341 -15.19335 -14.76087 -14.48636 -14.20541 -13.92527 -13.74809 -13.50515 -13.18186 -12.99228 -12.86349 -12.74168 -12.68588 -12.56798 -12.18406 -12.08999 -11.97265 -11.81999 -11.69626 -11.60493 -11.30000 -10.90839 -10.49267 -10.35809 -9.88724 -8.49361 -7.85968 -5.39755 1.45353 1.48504 1.56139 1.95280 2.37309 2.54529 3.18613 3.44270 3.55147 3.83834 3.98904 4.16103 4.24262 4.29163 4.49177 4.55161 4.63127 4.68902 4.73237 4.77938 4.82656 4.88568 4.95091 4.97639 5.03173 5.07194 5.10107 5.23599 5.33909 5.41229 5.42048 5.44844 5.54301 5.64738 5.69501 5.77493 6.40745 6.73882 7.13955 7.52639 7.84054 8.33174 9.13192 Molecular weight = 254.17amu Principal moments of inertia in cm(-1) A = 0.020948 B = 0.006475 C = 0.005686 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1336.293151 B = 4323.616788 C = 4923.106239 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.100 4.100 3 C -0.146 4.146 4 C 0.125 3.875 5 N -0.725 5.725 6 C 0.488 3.512 7 O -0.569 6.569 8 C 0.176 3.824 9 H 0.093 0.907 10 C -0.126 4.126 11 N -0.548 5.548 12 C -0.264 4.264 13 H 0.050 0.950 14 C -0.027 4.027 15 N -0.906 5.906 16 Si 0.955 3.045 17 H -0.287 1.287 18 H -0.287 1.287 19 H -0.279 1.279 20 C 0.126 3.874 21 C -0.192 4.192 22 C -0.198 4.198 23 H 0.057 0.943 24 H 0.075 0.925 25 H 0.054 0.946 26 H 0.081 0.919 27 H 0.072 0.928 28 H 0.053 0.947 29 H 0.053 0.947 30 H 0.044 0.956 31 H 0.052 0.948 32 H 0.407 0.593 33 H 0.036 0.964 34 H 0.060 0.940 35 H 0.068 0.932 36 H 0.255 0.745 37 H 0.091 0.909 38 H 0.076 0.924 39 H 0.104 0.896 40 H 0.090 0.910 41 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.267 8.295 -4.663 13.999 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.119 4.119 3 C -0.204 4.204 4 C 0.001 3.999 5 N -0.379 5.379 6 C 0.274 3.726 7 O -0.447 6.447 8 C 0.065 3.935 9 H 0.110 0.890 10 C -0.185 4.185 11 N -0.265 5.265 12 C -0.395 4.395 13 H 0.067 0.933 14 C -0.225 4.225 15 N -0.550 5.550 16 Si 0.783 3.217 17 H -0.214 1.214 18 H -0.213 1.213 19 H -0.204 1.204 20 C 0.018 3.982 21 C -0.231 4.231 22 C -0.239 4.239 23 H 0.076 0.924 24 H 0.094 0.906 25 H 0.073 0.927 26 H 0.099 0.901 27 H 0.091 0.909 28 H 0.072 0.928 29 H 0.072 0.928 30 H 0.063 0.937 31 H 0.070 0.930 32 H 0.243 0.757 33 H 0.055 0.945 34 H 0.079 0.921 35 H 0.087 0.913 36 H 0.064 0.936 37 H 0.109 0.891 38 H 0.094 0.906 39 H 0.122 0.878 40 H 0.109 0.891 41 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -10.516 7.984 -4.106 13.827 hybrid contribution 0.595 -1.079 -0.444 1.310 sum -9.921 6.905 -4.550 12.915 Atomic orbital electron populations 1.21753 0.93172 1.02202 1.02823 1.21319 0.97309 0.96882 0.96396 1.21852 1.01125 0.94887 1.02501 1.21401 0.79971 0.99556 0.98934 1.46136 1.07657 1.60212 1.23908 1.22576 0.92242 0.76028 0.81793 1.90582 1.70981 1.48308 1.34822 1.20209 0.85742 0.95270 0.92284 0.88958 1.21872 1.02293 0.94320 0.99996 1.43152 1.57877 1.26404 0.99023 1.19111 1.16946 0.93925 1.09479 0.93268 1.25633 0.96303 0.99964 1.00575 1.70121 1.39004 1.28630 1.17229 0.85477 0.77194 0.81079 0.77922 1.21396 1.21275 1.20426 1.20931 1.00904 0.93878 0.82483 1.23188 0.94141 1.04391 1.01366 1.23044 0.94408 1.00983 1.05451 0.92422 0.90647 0.92703 0.90073 0.90869 0.92814 0.92774 0.93727 0.93011 0.75653 0.94494 0.92070 0.91316 0.93555 0.89115 0.90585 0.87797 0.89148 0.92372 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.20 9.19 71.98 0.66 -1.54 16 2 C -0.10 -1.87 2.96 -10.80 -0.03 -1.90 16 3 C -0.15 -2.43 9.07 71.98 0.65 -1.78 16 4 C 0.13 3.39 5.06 86.38 0.44 3.83 16 5 N -0.72 -22.75 5.18 -463.07 -2.40 -25.14 16 6 C 0.49 20.47 7.05 87.65 0.62 21.08 16 7 O -0.57 -27.73 14.88 -3.01 -0.04 -27.77 16 8 C 0.18 7.99 2.19 44.24 0.10 8.09 16 9 H 0.09 4.65 6.09 -2.39 -0.01 4.63 16 10 C -0.13 -4.97 8.96 71.98 0.64 -4.33 16 11 N -0.55 -27.95 2.50 -658.42 -1.65 -29.60 16 12 C -0.26 -14.64 8.27 84.03 0.70 -13.95 16 13 H 0.05 2.84 6.98 -2.91 -0.02 2.82 16 14 C -0.03 -1.45 4.85 84.86 0.41 -1.04 16 15 N -0.91 -48.75 10.45 21.65 0.23 -48.53 16 16 Si 0.95 44.16 29.59 68.60 2.03 46.19 16 17 H -0.29 -13.19 7.11 99.48 0.71 -12.49 16 18 H -0.29 -13.03 7.11 99.48 0.71 -12.32 16 19 H -0.28 -12.87 7.11 99.48 0.71 -12.16 16 20 C 0.13 5.86 4.75 44.99 0.21 6.08 16 21 C -0.19 -8.13 9.79 30.62 0.30 -7.83 16 22 C -0.20 -8.69 9.72 30.61 0.30 -8.39 16 23 H 0.06 0.89 8.14 -2.39 -0.02 0.87 16 24 H 0.07 0.92 8.14 -2.39 -0.02 0.90 16 25 H 0.05 0.88 8.14 -2.38 -0.02 0.86 16 26 H 0.08 1.45 8.14 -2.38 -0.02 1.43 16 27 H 0.07 0.96 8.14 -2.39 -0.02 0.94 16 28 H 0.05 0.92 8.14 -2.38 -0.02 0.90 16 29 H 0.05 0.95 7.18 -2.39 -0.02 0.93 16 30 H 0.04 1.35 8.14 -2.38 -0.02 1.33 16 31 H 0.05 1.50 8.14 -2.39 -0.02 1.48 16 32 H 0.41 10.75 7.07 -92.70 -0.66 10.09 16 33 H 0.04 1.39 6.98 -2.39 -0.02 1.38 16 34 H 0.06 2.77 7.25 -2.38 -0.02 2.75 16 35 H 0.07 2.18 7.56 -2.39 -0.02 2.16 16 36 H 0.26 13.22 8.32 -92.71 -0.77 12.45 16 37 H 0.09 4.00 7.03 -2.39 -0.02 3.98 16 38 H 0.08 3.53 6.84 -2.38 -0.02 3.52 16 39 H 0.10 3.69 8.14 -2.39 -0.02 3.67 16 40 H 0.09 3.52 8.14 -2.38 -0.02 3.51 16 41 H 0.06 2.82 8.06 -2.38 -0.02 2.80 16 Total: -1.00 -63.59 326.56 3.51 -60.09 By element: Atomic # 1 Polarization: 26.09 SS G_CDS: 0.34 Total: 26.43 kcal Atomic # 6 Polarization: -6.66 SS G_CDS: 5.00 Total: -1.67 kcal Atomic # 7 Polarization: -99.45 SS G_CDS: -3.82 Total: -103.27 kcal Atomic # 8 Polarization: -27.73 SS G_CDS: -0.04 Total: -27.77 kcal Atomic # 14 Polarization: 44.16 SS G_CDS: 2.03 Total: 46.19 kcal Total: -63.59 3.51 -60.09 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000706722114.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.932 kcal (2) G-P(sol) polarization free energy of solvation -63.594 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.662 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.507 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.087 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.155 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds