Wall clock time and date at job start Mon Mar 30 2020 04:22:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.46503 * 119.99900 * 2 1 4 4 C 1.50691 * 109.47208 * 270.00033 * 3 2 1 5 5 H 1.07998 * 120.00290 * 0.02562 * 4 3 2 6 6 C 1.37883 * 119.99984 * 180.02562 * 4 3 2 7 7 N 1.31511 * 119.99824 * 359.97438 * 6 4 3 8 8 Si 1.86800 * 120.00075 * 180.02562 * 6 4 3 9 9 H 1.48494 * 109.47073 * 89.99975 * 8 6 4 10 10 H 1.48499 * 109.47195 * 209.99982 * 8 6 4 11 11 H 1.48503 * 109.47006 * 329.99600 * 8 6 4 12 12 C 1.34779 * 119.99941 * 179.97438 * 2 1 3 13 13 O 1.21283 * 119.99612 * 184.80374 * 12 2 1 14 14 C 1.50693 * 119.99718 * 4.80697 * 12 2 1 15 15 H 1.09005 * 109.47040 * 309.86339 * 14 12 2 16 16 C 1.52997 * 109.47514 * 69.86712 * 14 12 2 17 17 C 1.52999 * 109.47320 * 179.97438 * 16 14 12 18 18 C 1.53006 * 109.47306 * 300.00140 * 17 16 14 19 19 C 1.52997 * 109.47045 * 59.99692 * 18 17 16 20 20 H 1.09005 * 109.47271 * 60.00180 * 19 18 17 21 21 C 1.52993 * 109.47266 * 180.02562 * 19 18 17 22 22 N 1.46904 * 109.47256 * 295.00319 * 21 19 18 23 23 C 1.52999 * 109.47320 * 300.00299 * 19 18 17 24 24 H 1.09001 * 109.47434 * 263.31291 * 1 2 3 25 25 H 1.09003 * 109.47180 * 23.30631 * 1 2 3 26 26 H 1.08999 * 109.47117 * 143.30742 * 1 2 3 27 27 H 1.08997 * 109.47168 * 30.00400 * 3 2 1 28 28 H 1.09008 * 109.46837 * 149.99469 * 3 2 1 29 29 H 0.97002 * 119.99959 * 179.97438 * 7 6 4 30 30 H 1.09001 * 109.47055 * 299.99628 * 16 14 12 31 31 H 1.09005 * 109.47271 * 59.99768 * 16 14 12 32 32 H 1.09000 * 109.47037 * 179.97438 * 17 16 14 33 33 H 1.09005 * 109.46852 * 59.99861 * 17 16 14 34 34 H 1.09003 * 109.46800 * 300.00203 * 18 17 16 35 35 H 1.08998 * 109.47146 * 180.02562 * 18 17 16 36 36 H 1.08999 * 109.47063 * 54.99749 * 21 19 18 37 37 H 1.09006 * 109.47673 * 175.00159 * 21 19 18 38 38 H 1.00897 * 110.99874 * 56.04112 * 22 21 19 39 39 H 1.00901 * 110.99932 * 179.97438 * 22 21 19 40 40 H 1.09001 * 109.47543 * 179.97438 * 23 19 18 41 41 H 1.09003 * 109.47357 * 299.99999 * 23 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.4486 1.7038 -1.4207 5 1 2.0974 1.0963 -2.2416 6 6 3.1269 2.8775 -1.6727 7 7 3.5542 3.6176 -0.6730 8 14 3.4376 3.4172 -3.4338 9 1 2.3078 4.2608 -3.8996 10 1 4.6983 4.1995 -3.4967 11 1 3.5539 2.2203 -4.3051 12 6 2.1389 -1.1672 0.0005 13 8 3.3485 -1.1690 0.0885 14 6 1.3893 -2.4700 -0.1083 15 1 0.5819 -2.4868 0.6239 16 6 0.8047 -2.6061 -1.5156 17 6 0.0442 -3.9291 -1.6261 18 6 1.0016 -5.0918 -1.3570 19 6 1.5863 -4.9557 0.0503 20 1 0.7789 -4.9729 0.7825 21 6 2.5441 -6.1180 0.3193 22 7 1.7919 -7.3797 0.3313 23 6 2.3468 -3.6327 0.1609 24 1 -0.3634 -0.1197 1.0207 25 1 -0.3634 0.9438 -0.4066 26 1 -0.3633 -0.8240 -0.6140 27 1 1.6085 2.0284 0.5139 28 1 3.1499 1.1384 0.5140 29 1 4.0317 4.4432 -0.8502 30 1 0.1229 -1.7776 -1.7074 31 1 1.6121 -2.5893 -2.2477 32 1 -0.3727 -4.0258 -2.6286 33 1 -0.7632 -3.9463 -0.8940 34 1 1.8091 -5.0745 -2.0890 35 1 0.4599 -6.0343 -1.4362 36 1 3.3010 -6.1537 -0.4642 37 1 3.0278 -5.9741 1.2855 38 1 1.2821 -7.5049 -0.5303 39 1 2.4029 -8.1633 0.5068 40 1 2.7629 -3.5355 1.1637 41 1 3.1542 -3.6154 -0.5712 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000713874708.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:22:33 Heat of formation + Delta-G solvation = -59.516815 kcal Electronic energy + Delta-G solvation = -19655.166334 eV Core-core repulsion = 16761.826614 eV Total energy + Delta-G solvation = -2893.339720 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 254.174 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -39.85074 -37.81743 -34.81290 -34.60005 -32.58168 -30.85033 -30.39624 -27.67106 -25.86136 -24.77678 -23.72228 -22.02938 -21.18737 -19.72788 -18.24342 -16.47244 -16.40548 -15.95386 -15.42237 -15.13745 -14.74160 -14.63497 -14.08734 -13.93479 -13.56130 -13.05977 -13.01401 -12.37383 -12.22708 -12.05501 -11.87837 -11.75078 -11.39559 -11.18995 -11.03707 -10.97388 -10.90486 -10.52293 -10.45649 -10.29533 -10.13661 -9.94095 -9.59369 -8.89051 -8.71132 -8.42337 -7.57138 -6.02833 -4.07717 3.30113 3.36552 3.39991 3.49752 4.00344 4.40037 4.46605 4.68975 4.72736 4.81251 5.16585 5.22435 5.28682 5.30867 5.40742 5.46312 5.52259 5.60339 5.65638 5.71171 5.77665 5.89036 5.96988 5.99007 6.14183 6.14775 6.21717 6.27349 6.38193 6.48804 6.59150 6.93623 7.11140 7.21546 7.48802 7.59758 7.94272 8.25954 8.49149 8.92608 9.16476 9.57492 11.05161 Molecular weight = 254.17amu Principal moments of inertia in cm(-1) A = 0.032532 B = 0.004791 C = 0.004751 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 860.492592 B = 5842.570024 C = 5892.075951 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.075 3.925 2 N -0.603 5.603 3 C 0.244 3.756 4 C -0.526 4.526 5 H 0.057 0.943 6 C 0.060 3.940 7 N -0.895 5.895 8 Si 0.898 3.102 9 H -0.280 1.280 10 H -0.285 1.285 11 H -0.274 1.274 12 C 0.509 3.491 13 O -0.545 6.545 14 C -0.103 4.103 15 H 0.086 0.914 16 C -0.116 4.116 17 C -0.114 4.114 18 C -0.116 4.116 19 C -0.085 4.085 20 H 0.077 0.923 21 C 0.065 3.935 22 N -0.853 5.853 23 C -0.092 4.092 24 H 0.042 0.958 25 H 0.073 0.927 26 H 0.065 0.935 27 H 0.030 0.970 28 H 0.044 0.956 29 H 0.263 0.737 30 H 0.076 0.924 31 H 0.067 0.933 32 H 0.062 0.938 33 H 0.063 0.937 34 H 0.059 0.941 35 H 0.060 0.940 36 H 0.027 0.973 37 H 0.072 0.928 38 H 0.338 0.662 39 H 0.338 0.662 40 H 0.066 0.934 41 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.197 -17.386 -0.034 19.221 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 N -0.334 5.334 3 C 0.124 3.876 4 C -0.565 4.565 5 H 0.075 0.925 6 C -0.141 4.141 7 N -0.534 5.534 8 Si 0.725 3.275 9 H -0.206 1.206 10 H -0.211 1.211 11 H -0.199 1.199 12 C 0.295 3.705 13 O -0.423 6.423 14 C -0.125 4.125 15 H 0.104 0.896 16 C -0.153 4.153 17 C -0.152 4.152 18 C -0.154 4.154 19 C -0.104 4.104 20 H 0.096 0.904 21 C -0.066 4.066 22 N -0.382 5.382 23 C -0.131 4.131 24 H 0.060 0.940 25 H 0.092 0.908 26 H 0.083 0.917 27 H 0.048 0.952 28 H 0.062 0.938 29 H 0.073 0.927 30 H 0.094 0.906 31 H 0.086 0.914 32 H 0.081 0.919 33 H 0.081 0.919 34 H 0.078 0.922 35 H 0.078 0.922 36 H 0.045 0.955 37 H 0.091 0.909 38 H 0.151 0.849 39 H 0.150 0.850 40 H 0.085 0.915 41 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -7.839 -16.859 0.684 18.605 hybrid contribution 0.729 0.276 -1.787 1.950 sum -7.110 -16.583 -1.103 18.076 Atomic orbital electron populations 1.21846 0.81704 1.03131 1.00209 1.48118 1.06048 1.07834 1.71434 1.19284 0.92658 0.78236 0.97388 1.21447 1.36414 1.06273 0.92331 0.92506 1.24944 0.95395 0.96422 0.97387 1.69936 1.38405 1.14334 1.30709 0.86505 0.77683 0.78579 0.84704 1.20637 1.21081 1.19928 1.20337 0.87922 0.85071 0.77132 1.90642 1.14273 1.87277 1.50073 1.21278 0.98765 0.93662 0.98767 0.89615 1.21649 1.00288 0.97719 0.95644 1.21503 0.97910 0.94323 1.01436 1.21615 0.98955 0.98071 0.96712 1.21196 0.98062 0.93796 0.97360 0.90424 1.21839 0.94675 0.89328 1.00764 1.58785 1.32586 1.04447 1.42421 1.21324 0.97446 0.91488 1.02793 0.93985 0.90777 0.91711 0.95156 0.93836 0.92736 0.90568 0.91387 0.91907 0.91852 0.92194 0.92171 0.95453 0.90938 0.84851 0.84994 0.91519 0.91087 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.22 9.84 59.85 0.59 1.81 16 2 N -0.60 -13.07 2.86 -182.96 -0.52 -13.59 16 3 C 0.24 6.52 5.17 -5.20 -0.03 6.50 16 4 C -0.53 -15.10 9.39 -34.44 -0.32 -15.42 16 5 H 0.06 1.62 7.81 -52.49 -0.41 1.21 16 6 C 0.06 1.75 5.46 -17.82 -0.10 1.65 16 7 N -0.89 -26.93 13.29 55.43 0.74 -26.20 16 8 Si 0.90 22.02 29.54 -169.99 -5.02 17.00 16 9 H -0.28 -6.66 7.11 56.52 0.40 -6.25 16 10 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 11 H -0.27 -6.70 7.11 56.52 0.40 -6.30 16 12 C 0.51 10.80 6.93 -10.99 -0.08 10.73 16 13 O -0.54 -14.00 15.53 5.56 0.09 -13.91 16 14 C -0.10 -1.57 1.71 -91.77 -0.16 -1.73 16 15 H 0.09 1.15 7.67 -51.93 -0.40 0.76 16 16 C -0.12 -1.57 4.90 -26.73 -0.13 -1.70 16 17 C -0.11 -1.18 5.92 -26.73 -0.16 -1.34 16 18 C -0.12 -1.16 4.97 -26.73 -0.13 -1.29 16 19 C -0.09 -0.94 2.40 -90.63 -0.22 -1.16 16 20 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 21 C 0.06 0.65 6.24 -3.83 -0.02 0.63 16 22 N -0.85 -7.37 9.62 -10.37 -0.10 -7.47 16 23 C -0.09 -1.31 3.83 -26.73 -0.10 -1.41 16 24 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 25 H 0.07 1.23 8.02 -51.93 -0.42 0.82 16 26 H 0.06 0.88 4.37 -51.93 -0.23 0.65 16 27 H 0.03 0.82 8.07 -51.93 -0.42 0.40 16 28 H 0.04 1.32 7.36 -51.92 -0.38 0.93 16 29 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 30 H 0.08 1.03 5.45 -51.93 -0.28 0.75 16 31 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 32 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 33 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 34 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 35 H 0.06 0.51 6.68 -51.93 -0.35 0.16 16 36 H 0.03 0.28 8.14 -51.93 -0.42 -0.15 16 37 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 38 H 0.34 2.56 7.25 -39.29 -0.28 2.28 16 39 H 0.34 2.37 9.08 -39.29 -0.36 2.02 16 40 H 0.07 1.00 8.14 -51.93 -0.42 0.57 16 41 H 0.07 1.13 7.99 -51.93 -0.41 0.71 16 LS Contribution 320.26 15.07 4.83 4.83 Total: -1.00 -33.06 320.26 -7.73 -40.79 By element: Atomic # 1 Polarization: 8.18 SS G_CDS: -6.88 Total: 1.30 kcal Atomic # 6 Polarization: -1.88 SS G_CDS: -0.86 Total: -2.74 kcal Atomic # 7 Polarization: -47.37 SS G_CDS: 0.11 Total: -47.26 kcal Atomic # 8 Polarization: -14.00 SS G_CDS: 0.09 Total: -13.91 kcal Atomic # 14 Polarization: 22.02 SS G_CDS: -5.02 Total: 17.00 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -33.06 -7.73 -40.79 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000713874708.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.729 kcal (2) G-P(sol) polarization free energy of solvation -33.057 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.786 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.731 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.788 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.517 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds