Wall clock time and date at job start Mon Mar 30 2020 04:21:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30681 * 1 3 3 Si 1.86800 * 119.99816 * 2 1 4 4 H 1.48503 * 109.46848 * 239.99885 * 3 2 1 5 5 H 1.48503 * 109.47237 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.47035 * 119.99980 * 3 2 1 7 7 C 1.40050 * 119.99902 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00085 * 180.02562 * 7 2 1 9 9 C 1.46376 * 119.99840 * 0.02562 * 7 2 1 10 10 O 1.21682 * 120.00159 * 359.97438 * 9 7 2 11 11 N 1.34774 * 119.99597 * 179.97438 * 9 7 2 12 12 C 1.46506 * 120.00072 * 180.02562 * 11 9 7 13 13 C 1.50703 * 109.47289 * 179.97438 * 12 11 9 14 14 C 1.38163 * 120.01870 * 259.72818 * 13 12 11 15 15 C 1.38349 * 120.03801 * 179.72657 * 14 13 12 16 16 Cl 1.73602 * 119.95548 * 180.27435 * 15 14 13 17 17 C 1.38390 * 120.08531 * 0.54447 * 15 14 13 18 18 C 1.38124 * 120.04174 * 359.73170 * 17 15 14 19 19 C 1.38692 * 120.01999 * 80.00193 * 13 12 11 20 20 O 1.35924 * 120.04370 * 0.02562 * 19 13 12 21 21 H 0.96999 * 120.00129 * 0.02562 * 1 2 3 22 22 H 0.97001 * 120.00676 * 359.97438 * 11 9 7 23 23 H 1.09001 * 109.47060 * 300.00359 * 12 11 9 24 24 H 1.09004 * 109.47073 * 59.99848 * 12 11 9 25 25 H 1.07997 * 119.98103 * 359.97438 * 14 13 12 26 26 H 1.07999 * 119.97886 * 179.70407 * 17 15 14 27 27 H 1.07995 * 120.02297 * 179.97438 * 18 17 15 28 28 H 0.96706 * 113.99842 * 90.00810 * 20 19 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3068 0.0000 0.0000 3 14 2.2408 1.6178 0.0000 4 1 3.0945 1.6964 -1.2125 5 1 1.2757 2.7465 -0.0006 6 1 3.0945 1.6964 1.2125 7 6 2.0070 -1.2129 0.0005 8 1 3.0870 -1.2129 0.0010 9 6 1.2751 -2.4805 0.0005 10 8 0.0583 -2.4805 0.0005 11 7 1.9490 -3.6477 0.0005 12 6 1.2165 -4.9165 0.0000 13 6 2.1958 -6.0619 -0.0005 14 6 2.4829 -6.7254 -1.1780 15 6 3.3861 -7.7733 -1.1799 16 17 3.7506 -8.6009 -2.6619 17 6 3.9953 -8.1664 -0.0011 18 6 3.7065 -7.5092 1.1790 19 6 2.8052 -6.4544 1.1819 20 8 2.5195 -5.8068 2.3423 21 1 -0.4850 0.8400 -0.0004 22 1 2.9190 -3.6477 0.0002 23 1 0.5895 -4.9744 0.8897 24 1 0.5902 -4.9740 -0.8903 25 1 2.0049 -6.4232 -2.0980 26 1 4.6965 -8.9877 -0.0037 27 1 4.1817 -7.8164 2.0988 28 1 1.7758 -6.1852 2.8311 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000011799589.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:21:06 Heat of formation + Delta-G solvation = -95.782438 kcal Electronic energy + Delta-G solvation = -15911.099745 eV Core-core repulsion = 12951.678649 eV Total energy + Delta-G solvation = -2959.421096 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 255.045 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -41.09653 -39.22664 -38.12338 -37.00557 -35.47741 -34.49609 -32.30261 -30.65396 -28.76860 -26.58572 -23.75283 -22.73580 -21.66968 -19.59033 -19.14479 -17.60854 -17.35813 -17.27329 -16.34946 -16.14744 -15.83852 -15.14127 -15.00299 -14.43125 -14.23862 -13.93064 -13.51868 -13.31388 -13.13615 -12.95838 -12.67476 -12.61726 -12.20431 -12.05390 -11.98278 -11.43875 -10.92217 -10.23005 -9.82885 -9.53096 -9.46204 -8.29292 -6.86291 -0.03397 0.12363 1.09537 1.39953 1.43625 1.55284 2.24038 2.38591 2.46541 3.19694 3.31531 3.57479 3.60064 3.78263 4.07502 4.25361 4.42905 4.61472 4.74380 4.83945 5.05230 5.14242 5.31090 5.36785 5.59769 5.86177 6.17500 6.25056 6.79054 6.85945 7.50799 8.47275 8.66256 Molecular weight = 255.04amu Principal moments of inertia in cm(-1) A = 0.030031 B = 0.004700 C = 0.004467 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 932.152421 B = 5956.504391 C = 6266.596534 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.821 5.821 2 C 0.029 3.971 3 Si 0.999 3.001 4 H -0.255 1.255 5 H -0.272 1.272 6 H -0.255 1.255 7 C -0.575 4.575 8 H 0.084 0.916 9 C 0.540 3.460 10 O -0.632 6.632 11 N -0.745 5.745 12 C 0.183 3.817 13 C -0.122 4.122 14 C -0.086 4.086 15 C -0.052 4.052 16 Cl -0.065 7.065 17 C -0.082 4.082 18 C -0.128 4.128 19 C 0.124 3.876 20 O -0.503 6.503 21 H 0.275 0.725 22 H 0.391 0.609 23 H 0.048 0.952 24 H 0.043 0.957 25 H 0.134 0.866 26 H 0.167 0.833 27 H 0.167 0.833 28 H 0.409 0.591 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.972 -16.554 0.837 19.344 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.451 5.451 2 C -0.186 4.186 3 Si 0.818 3.182 4 H -0.179 1.179 5 H -0.197 1.197 6 H -0.179 1.179 7 C -0.611 4.611 8 H 0.102 0.898 9 C 0.345 3.655 10 O -0.519 6.519 11 N -0.399 5.399 12 C 0.059 3.941 13 C -0.124 4.124 14 C -0.105 4.105 15 C -0.079 4.079 16 Cl -0.036 7.036 17 C -0.101 4.101 18 C -0.146 4.146 19 C 0.078 3.922 20 O -0.316 6.316 21 H 0.085 0.915 22 H 0.224 0.776 23 H 0.066 0.934 24 H 0.061 0.939 25 H 0.152 0.848 26 H 0.184 0.816 27 H 0.184 0.816 28 H 0.268 0.732 Dipole moment (debyes) X Y Z Total from point charges 9.391 -16.208 0.553 18.740 hybrid contribution -0.140 0.416 -0.085 0.447 sum 9.251 -15.792 0.468 18.308 Atomic orbital electron populations 1.70178 1.09472 1.29057 1.36348 1.26976 0.95566 1.04909 0.91162 0.85064 0.78220 0.74682 0.80271 1.17869 1.19695 1.17874 1.21388 0.94639 0.90176 1.54914 0.89774 1.18571 0.86806 0.84151 0.76010 1.90543 1.16054 1.87879 1.57435 1.45785 1.08970 1.04108 1.81031 1.19556 0.92457 0.81911 1.00143 1.20175 0.99966 0.98122 0.94094 1.20917 0.97153 0.94450 0.97976 1.20945 1.00959 0.97197 0.88764 1.98369 1.93773 1.77532 1.33904 1.21257 0.99002 1.00322 0.89483 1.21610 0.98689 0.94269 1.00047 1.18583 0.95947 0.91994 0.85627 1.84848 1.56050 1.57564 1.33185 0.91487 0.77635 0.93400 0.93879 0.84843 0.81570 0.81575 0.73190 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -51.03 11.83 21.84 0.26 -50.77 15 2 C 0.03 1.65 5.50 85.30 0.47 2.12 15 3 Si 1.00 41.69 29.56 68.60 2.03 43.72 15 4 H -0.25 -10.02 7.11 99.48 0.71 -9.31 15 5 H -0.27 -10.88 7.11 99.48 0.71 -10.18 15 6 H -0.25 -10.03 7.11 99.48 0.71 -9.32 15 7 C -0.57 -33.56 9.54 24.83 0.24 -33.32 15 8 H 0.08 4.45 7.85 -2.91 -0.02 4.42 15 9 C 0.54 32.29 7.75 86.36 0.67 32.96 15 10 O -0.63 -43.11 15.02 -4.29 -0.06 -43.18 15 11 N -0.75 -35.16 5.54 -471.13 -2.61 -37.78 15 12 C 0.18 7.33 5.46 85.63 0.47 7.80 15 13 C -0.12 -3.67 5.26 -19.77 -0.10 -3.78 15 14 C -0.09 -2.29 9.45 22.28 0.21 -2.08 15 15 C -0.05 -1.15 6.32 22.33 0.14 -1.01 15 16 Cl -0.06 -1.31 28.95 -2.72 -0.08 -1.39 15 17 C -0.08 -1.46 9.82 22.28 0.22 -1.24 15 18 C -0.13 -2.41 9.99 22.36 0.22 -2.19 15 19 C 0.12 3.18 6.68 22.50 0.15 3.33 15 20 O -0.50 -13.36 12.74 -92.70 -1.18 -14.54 15 21 H 0.28 15.46 8.29 -92.71 -0.77 14.69 15 22 H 0.39 16.80 8.44 -92.71 -0.78 16.02 15 23 H 0.05 2.00 7.85 -2.39 -0.02 1.98 15 24 H 0.04 1.82 8.00 -2.38 -0.02 1.80 15 25 H 0.13 3.60 8.03 -2.91 -0.02 3.57 15 26 H 0.17 1.93 8.06 -2.91 -0.02 1.90 15 27 H 0.17 2.18 8.06 -2.91 -0.02 2.16 15 28 H 0.41 7.16 9.06 -74.05 -0.67 6.49 15 Total: -1.00 -77.89 274.38 0.80 -77.09 By element: Atomic # 1 Polarization: 24.46 SS G_CDS: -0.23 Total: 24.23 kcal Atomic # 6 Polarization: -0.08 SS G_CDS: 2.68 Total: 2.60 kcal Atomic # 7 Polarization: -86.19 SS G_CDS: -2.35 Total: -88.54 kcal Atomic # 8 Polarization: -56.47 SS G_CDS: -1.25 Total: -57.71 kcal Atomic # 14 Polarization: 41.69 SS G_CDS: 2.03 Total: 43.72 kcal Atomic # 17 Polarization: -1.31 SS G_CDS: -0.08 Total: -1.39 kcal Total: -77.89 0.80 -77.09 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000011799589.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.696 kcal (2) G-P(sol) polarization free energy of solvation -77.887 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.583 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.800 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.087 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.782 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds