Wall clock time and date at job start Mon Mar 30 2020 04:38:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.46498 * 120.00209 * 2 1 4 4 C 1.50700 * 109.46912 * 269.99581 * 3 2 1 5 5 H 1.07996 * 120.00027 * 0.02562 * 4 3 2 6 6 C 1.37884 * 119.99798 * 179.97438 * 4 3 2 7 7 N 1.31505 * 120.00343 * 0.02562 * 6 4 3 8 8 Si 1.86808 * 119.99645 * 180.02562 * 6 4 3 9 9 H 1.48498 * 109.46855 * 90.00167 * 8 6 4 10 10 H 1.48501 * 109.46967 * 210.00289 * 8 6 4 11 11 H 1.48495 * 109.46917 * 330.00210 * 8 6 4 12 12 C 1.34778 * 120.00145 * 179.97438 * 2 1 3 13 13 O 1.21517 * 120.00435 * 182.23059 * 12 2 1 14 14 C 1.48102 * 119.99475 * 2.22895 * 12 2 1 15 15 C 1.39785 * 120.16428 * 172.87823 * 14 12 2 16 16 C 1.38719 * 117.91642 * 179.97438 * 15 14 12 17 17 C 1.38761 * 118.06299 * 359.97438 * 16 15 14 18 18 Cl 1.73594 * 119.98389 * 179.97438 * 17 16 15 19 19 N 1.32295 * 120.03431 * 0.02562 * 17 16 15 20 20 N 1.28355 * 122.27561 * 0.02562 * 19 17 16 21 21 H 1.09000 * 109.47507 * 263.81839 * 1 2 3 22 22 H 1.08999 * 109.46873 * 23.81586 * 1 2 3 23 23 H 1.08995 * 109.47015 * 143.81342 * 1 2 3 24 24 H 1.09001 * 109.47247 * 29.99560 * 3 2 1 25 25 H 1.08999 * 109.47450 * 149.99598 * 3 2 1 26 26 H 0.97002 * 120.00523 * 179.97438 * 7 6 4 27 27 H 1.08007 * 121.04177 * 0.24623 * 15 14 12 28 28 H 1.08004 * 120.96559 * 180.02562 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4488 1.7036 -1.4208 5 1 2.0975 1.0960 -2.2417 6 6 3.1262 2.8779 -1.6728 7 7 3.5534 3.6180 -0.6733 8 14 3.4370 3.4173 -3.4341 9 1 2.3066 4.2599 -3.9004 10 1 4.6971 4.2005 -3.4968 11 1 3.5542 2.2203 -4.3050 12 6 2.1389 -1.1672 0.0005 13 8 3.3534 -1.1676 0.0415 14 6 1.3991 -2.4493 -0.0488 15 6 2.0915 -3.6544 -0.1983 16 6 1.3522 -4.8275 -0.2382 17 6 -0.0277 -4.7336 -0.1269 18 17 -1.0014 -6.1700 -0.1714 19 7 -0.6018 -3.5498 0.0120 20 7 0.0751 -2.4599 0.0489 21 1 -0.3634 -0.1107 1.0217 22 1 -0.3633 0.9402 -0.4150 23 1 -0.3633 -0.8294 -0.6067 24 1 1.6084 2.0284 0.5138 25 1 3.1499 1.1384 0.5139 26 1 4.0303 4.4439 -0.8505 27 1 3.1686 -3.6720 -0.2758 28 1 1.8367 -5.7861 -0.3518 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000037485552.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:38:28 Heat of formation + Delta-G solvation = 14.586885 kcal Electronic energy + Delta-G solvation = -16147.700576 eV Core-core repulsion = 13225.358204 eV Total energy + Delta-G solvation = -2922.342372 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 255.052 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -42.47812 -40.40608 -38.03898 -36.87463 -34.88860 -34.44047 -33.55252 -29.87835 -27.78155 -26.53303 -25.91199 -24.57885 -21.35502 -19.22111 -18.72225 -18.49851 -18.14102 -17.12213 -16.95443 -16.30677 -15.79645 -15.56738 -14.90288 -14.55489 -14.35674 -13.83284 -13.77631 -13.35099 -13.30067 -12.97949 -12.72727 -12.59965 -12.27704 -12.20081 -11.74265 -11.53131 -11.05466 -10.92385 -10.77633 -10.65037 -9.55738 -8.24528 -6.39618 -0.88793 -0.51303 0.37653 1.37767 1.40177 1.47686 1.52150 1.97797 2.34404 2.40258 2.73367 3.05664 3.14929 3.37860 3.52175 3.65955 4.24328 4.49788 4.60498 4.72496 4.76730 4.95135 5.13377 5.17563 5.49068 5.74160 6.00098 6.48403 6.67361 7.00415 7.18056 7.31985 8.83045 Molecular weight = 255.05amu Principal moments of inertia in cm(-1) A = 0.042471 B = 0.004598 C = 0.004584 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 659.120536 B = 6087.704624 C = 6107.350277 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.081 3.919 2 N -0.582 5.582 3 C 0.256 3.744 4 C -0.547 4.547 5 H 0.053 0.947 6 C 0.011 3.989 7 N -0.925 5.925 8 Si 0.970 3.030 9 H -0.265 1.265 10 H -0.278 1.278 11 H -0.272 1.272 12 C 0.552 3.448 13 O -0.570 6.570 14 C 0.022 3.978 15 C -0.051 4.051 16 C -0.081 4.081 17 C 0.119 3.881 18 Cl 0.018 6.982 19 N -0.256 5.256 20 N -0.197 5.197 21 H 0.067 0.933 22 H 0.068 0.932 23 H 0.101 0.899 24 H 0.031 0.969 25 H 0.011 0.989 26 H 0.269 0.731 27 H 0.185 0.815 28 H 0.214 0.786 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.560 -19.271 0.331 20.704 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 N -0.310 5.310 3 C 0.135 3.865 4 C -0.586 4.586 5 H 0.071 0.929 6 C -0.189 4.189 7 N -0.564 5.564 8 Si 0.794 3.206 9 H -0.190 1.190 10 H -0.204 1.204 11 H -0.197 1.197 12 C 0.337 3.663 13 O -0.449 6.449 14 C -0.124 4.124 15 C -0.080 4.080 16 C -0.110 4.110 17 C -0.051 4.051 18 Cl 0.046 6.954 19 N -0.102 5.102 20 N -0.045 5.045 21 H 0.085 0.915 22 H 0.086 0.914 23 H 0.119 0.881 24 H 0.049 0.951 25 H 0.029 0.971 26 H 0.078 0.922 27 H 0.202 0.798 28 H 0.231 0.769 Dipole moment (debyes) X Y Z Total from point charges -8.334 -18.320 0.582 20.135 hybrid contribution 1.401 -0.107 -0.753 1.594 sum -6.933 -18.426 -0.170 19.688 Atomic orbital electron populations 1.22337 0.77236 1.03675 1.02917 1.48148 1.08913 1.06266 1.67707 1.18985 0.91447 0.79391 0.96667 1.21635 1.37346 1.06953 0.92639 0.92851 1.25840 0.94707 0.96209 1.02097 1.70036 1.38601 1.14739 1.33049 0.85386 0.78110 0.78248 0.78898 1.19009 1.20361 1.19693 1.17987 0.86492 0.83440 0.78431 1.90742 1.14178 1.87076 1.52918 1.22927 0.92989 0.95925 1.00528 1.22697 1.04277 0.89596 0.91423 1.22669 0.91036 1.01983 0.95349 1.23977 0.92060 0.91399 0.97703 1.98444 1.71078 1.30016 1.95869 1.73051 1.31782 0.94830 1.10508 1.73831 1.05268 1.17119 1.08254 0.91458 0.91350 0.88080 0.95141 0.97135 0.92212 0.79785 0.76891 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 2.91 9.33 127.77 1.19 4.10 15 2 N -0.58 -26.23 2.86 -854.30 -2.44 -28.67 15 3 C 0.26 13.91 5.15 85.63 0.44 14.35 15 4 C -0.55 -31.56 9.39 25.60 0.24 -31.32 15 5 H 0.05 3.06 7.81 -2.91 -0.02 3.04 15 6 C 0.01 0.63 5.46 84.66 0.46 1.09 15 7 N -0.93 -55.32 13.29 21.45 0.28 -55.04 15 8 Si 0.97 44.51 29.54 68.60 2.03 46.54 15 9 H -0.27 -11.51 7.11 99.48 0.71 -10.81 15 10 H -0.28 -12.42 7.11 99.48 0.71 -11.72 15 11 H -0.27 -12.32 7.11 99.48 0.71 -11.61 15 12 C 0.55 23.77 7.66 86.86 0.67 24.44 15 13 O -0.57 -28.30 15.98 -3.77 -0.06 -28.36 15 14 C 0.02 0.72 6.70 42.00 0.28 1.00 15 15 C -0.05 -1.19 9.73 22.76 0.22 -0.97 15 16 C -0.08 -1.32 9.99 22.51 0.22 -1.09 15 17 C 0.12 2.42 7.37 84.75 0.62 3.05 15 18 Cl 0.02 0.27 29.13 -2.72 -0.08 0.20 15 19 N -0.26 -6.98 11.50 -49.74 -0.57 -7.56 15 20 N -0.20 -6.15 7.26 -48.49 -0.35 -6.51 15 21 H 0.07 2.17 8.14 -2.39 -0.02 2.15 15 22 H 0.07 2.45 8.03 -2.39 -0.02 2.43 15 23 H 0.10 3.43 5.26 -2.59 -0.01 3.41 15 24 H 0.03 1.68 8.07 -2.39 -0.02 1.66 15 25 H 0.01 0.64 7.39 -2.39 -0.02 0.63 15 26 H 0.27 15.03 8.31 -92.71 -0.77 14.26 15 27 H 0.18 3.83 7.73 -2.91 -0.02 3.81 15 28 H 0.21 1.34 8.06 -2.91 -0.02 1.31 15 Total: -1.00 -70.53 270.43 4.35 -66.18 By element: Atomic # 1 Polarization: -2.62 SS G_CDS: 1.19 Total: -1.43 kcal Atomic # 6 Polarization: 10.30 SS G_CDS: 4.35 Total: 14.65 kcal Atomic # 7 Polarization: -94.69 SS G_CDS: -3.08 Total: -97.77 kcal Atomic # 8 Polarization: -28.30 SS G_CDS: -0.06 Total: -28.36 kcal Atomic # 14 Polarization: 44.51 SS G_CDS: 2.03 Total: 46.54 kcal Atomic # 17 Polarization: 0.27 SS G_CDS: -0.08 Total: 0.20 kcal Total: -70.53 4.35 -66.18 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000037485552.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.763 kcal (2) G-P(sol) polarization free energy of solvation -70.529 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.234 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.353 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.176 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.587 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds