Wall clock time and date at job start Mon Mar 30 2020 04:42:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31525 * 1 3 3 Si 1.86797 * 119.99820 * 2 1 4 4 H 1.48505 * 109.46988 * 180.02562 * 3 2 1 5 5 H 1.48505 * 109.47073 * 299.99901 * 3 2 1 6 6 H 1.48498 * 109.47349 * 60.00153 * 3 2 1 7 7 C 1.37874 * 119.99721 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99803 * 179.97438 * 7 2 1 9 9 C 1.50700 * 120.00220 * 0.02562 * 7 2 1 10 10 C 1.53000 * 109.47023 * 180.02562 * 9 7 2 11 11 S 1.81396 * 109.47186 * 179.97438 * 10 9 7 12 12 O 1.42098 * 110.54460 * 68.37112 * 11 10 9 13 13 O 1.42097 * 110.54211 * 291.62079 * 11 10 9 14 14 C 1.76195 * 104.45167 * 179.97438 * 11 10 9 15 15 C 1.38293 * 119.92587 * 89.99956 * 14 11 10 16 16 C 1.38103 * 120.07544 * 180.02562 * 15 14 11 17 17 C 1.38914 * 119.92585 * 0.02562 * 16 15 14 18 18 N 1.39671 * 120.07130 * 179.97438 * 17 16 15 19 19 C 1.38912 * 119.84788 * 0.25342 * 17 16 15 20 20 C 1.38098 * 119.92495 * 359.48977 * 19 17 16 21 21 H 0.96998 * 119.99465 * 0.02562 * 1 2 3 22 22 H 1.08996 * 109.47206 * 59.99773 * 9 7 2 23 23 H 1.08997 * 109.47337 * 299.99567 * 9 7 2 24 24 H 1.08996 * 109.47320 * 59.99836 * 10 9 7 25 25 H 1.09004 * 109.47055 * 299.99850 * 10 9 7 26 26 H 1.08001 * 119.95790 * 359.97438 * 15 14 11 27 27 H 1.07999 * 120.03416 * 179.97438 * 16 15 14 28 28 H 0.97001 * 120.00529 * 0.02562 * 18 17 16 29 29 H 0.97005 * 119.99745 * 179.72366 * 18 17 16 30 30 H 1.08005 * 120.03088 * 179.72680 * 19 17 16 31 31 H 1.08005 * 119.96252 * 180.25688 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3153 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3464 -0.0006 5 1 1.8904 2.3964 -1.2126 6 1 1.8905 2.3964 1.2125 7 6 2.0046 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4991 0.0005 10 6 2.2453 -3.6621 0.0018 11 16 1.3383 -5.2330 0.0026 12 8 0.6648 -5.4206 -1.2345 13 8 0.6639 -5.4188 1.2394 14 6 2.5961 -6.4669 0.0033 15 6 3.0886 -6.9494 1.2021 16 6 4.0748 -7.9162 1.2062 17 6 4.5725 -8.4035 0.0044 18 7 5.5704 -9.3809 0.0051 19 6 4.0797 -7.9124 -1.1979 20 6 3.0898 -6.9496 -1.1949 21 1 -0.4849 0.8401 -0.0004 22 1 0.6247 -2.5571 -0.8896 23 1 0.6241 -2.5568 0.8903 24 1 2.8713 -3.6039 0.8922 25 1 2.8726 -3.6047 -0.8877 26 1 2.7020 -6.5691 2.1361 27 1 4.4592 -8.2922 2.1428 28 1 5.9163 -9.7203 0.8453 29 1 5.9143 -9.7233 -0.8348 30 1 4.4678 -8.2861 -2.1341 31 1 2.7033 -6.5704 -2.1294 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000042193127.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:42:17 Heat of formation + Delta-G solvation = -57.068210 kcal Electronic energy + Delta-G solvation = -16225.475956 eV Core-core repulsion = 13405.610435 eV Total energy + Delta-G solvation = -2819.865521 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 255.072 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.37826 -36.43204 -35.30747 -34.76967 -33.84092 -31.10969 -31.01521 -29.00883 -25.53949 -22.99536 -22.65588 -21.39066 -18.52354 -17.72537 -17.17589 -16.97798 -16.26779 -15.27198 -15.18254 -14.56089 -14.41839 -14.17995 -13.48438 -13.46310 -13.28729 -12.91813 -12.47389 -11.69616 -11.42843 -11.40878 -11.14688 -11.12655 -11.05860 -10.89136 -10.44669 -10.33338 -10.28724 -9.63630 -9.10648 -9.07513 -8.46793 -7.98934 -6.08869 -4.14091 0.72689 1.15171 1.34811 3.28103 3.35345 3.38860 3.45760 3.53111 3.66490 4.37990 4.53991 4.61163 4.85588 4.87183 5.26499 5.30770 5.39678 5.57370 5.78134 5.80522 5.92728 6.01563 6.10974 6.28728 6.54437 6.67302 7.13723 7.36200 7.37028 7.41990 7.84755 8.21526 8.89728 9.50458 11.02197 Molecular weight = 255.07amu Principal moments of inertia in cm(-1) A = 0.034090 B = 0.004925 C = 0.004645 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 821.152909 B = 5683.830090 C = 6026.488582 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.058 3.942 3 Si 0.899 3.101 4 H -0.272 1.272 5 H -0.282 1.282 6 H -0.282 1.282 7 C -0.519 4.519 8 H 0.062 0.938 9 C 0.025 3.975 10 C -0.568 4.568 11 S 2.482 3.518 12 O -0.952 6.952 13 O -0.952 6.952 14 C -0.709 4.709 15 C 0.023 3.977 16 C -0.220 4.220 17 C 0.255 3.745 18 N -0.873 5.873 19 C -0.220 4.220 20 C 0.023 3.977 21 H 0.264 0.736 22 H 0.035 0.965 23 H 0.035 0.965 24 H 0.122 0.878 25 H 0.122 0.878 26 H 0.141 0.859 27 H 0.126 0.874 28 H 0.400 0.600 29 H 0.400 0.600 30 H 0.126 0.874 31 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.242 -16.663 0.010 20.101 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.145 4.145 3 Si 0.727 3.273 4 H -0.197 1.197 5 H -0.208 1.208 6 H -0.208 1.208 7 C -0.558 4.558 8 H 0.081 0.919 9 C -0.014 4.014 10 C -0.701 4.701 11 S 2.666 3.334 12 O -0.950 6.950 13 O -0.950 6.950 14 C -0.796 4.796 15 C 0.003 3.997 16 C -0.244 4.244 17 C 0.148 3.852 18 N -0.410 5.410 19 C -0.243 4.243 20 C 0.003 3.997 21 H 0.074 0.926 22 H 0.054 0.946 23 H 0.054 0.946 24 H 0.140 0.860 25 H 0.140 0.860 26 H 0.159 0.841 27 H 0.144 0.856 28 H 0.228 0.772 29 H 0.228 0.772 30 H 0.144 0.856 31 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges 10.195 -16.758 0.011 19.616 hybrid contribution 1.711 0.502 0.000 1.783 sum 11.906 -16.256 0.011 20.150 Atomic orbital electron populations 1.69973 1.06089 1.27034 1.49748 1.25065 0.94963 0.99498 0.94964 0.86422 0.79939 0.83233 0.77731 1.19661 1.20830 1.20823 1.21053 0.93143 0.89720 1.51914 0.91938 1.19029 0.92809 0.90448 0.99120 1.30212 1.13317 1.16165 1.10382 1.05889 0.75980 0.77084 0.74468 1.93498 1.71248 1.85588 1.44634 1.93498 1.71199 1.85613 1.44652 1.30619 1.25658 1.24432 0.98933 1.20727 0.90616 0.91398 0.96925 1.20665 1.03415 1.03980 0.96290 1.18030 0.86382 0.86505 0.94251 1.42627 1.42876 1.44315 1.11193 1.20665 1.03382 1.04019 0.96283 1.20723 0.90595 0.91404 0.96935 0.92615 0.94627 0.94634 0.85969 0.85962 0.84139 0.85572 0.77177 0.77178 0.85571 0.84138 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.50 13.29 55.43 0.74 -25.76 16 2 C 0.06 1.62 5.46 -17.82 -0.10 1.53 16 3 Si 0.90 21.22 29.54 -169.99 -5.02 16.19 16 4 H -0.27 -6.23 7.11 56.52 0.40 -5.82 16 5 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 6 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 7 C -0.52 -14.35 9.11 -34.44 -0.31 -14.66 16 8 H 0.06 1.64 7.74 -52.49 -0.41 1.23 16 9 C 0.02 0.63 4.98 -27.88 -0.14 0.49 16 10 C -0.57 -10.96 5.92 37.16 0.22 -10.74 16 11 S 2.48 45.96 5.15 -107.50 -0.55 45.41 16 12 O -0.95 -20.00 17.12 -57.54 -0.98 -20.98 16 13 O -0.95 -20.00 17.12 -57.54 -0.99 -20.98 16 14 C -0.71 -10.84 5.66 -39.54 -0.22 -11.07 16 15 C 0.02 0.32 9.46 -39.61 -0.37 -0.06 16 16 C -0.22 -2.53 9.90 -39.38 -0.39 -2.92 16 17 C 0.25 2.71 6.75 -83.79 -0.57 2.15 16 18 N -0.87 -5.84 9.09 32.41 0.29 -5.54 16 19 C -0.22 -2.53 9.90 -39.38 -0.39 -2.92 16 20 C 0.02 0.32 9.46 -39.62 -0.37 -0.06 16 21 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 22 H 0.04 0.95 8.14 -51.93 -0.42 0.53 16 23 H 0.04 0.95 8.14 -51.93 -0.42 0.53 16 24 H 0.12 2.10 8.14 -51.93 -0.42 1.68 16 25 H 0.12 2.10 8.14 -51.92 -0.42 1.68 16 26 H 0.14 1.79 7.57 -52.49 -0.40 1.40 16 27 H 0.13 1.11 8.06 -52.49 -0.42 0.69 16 28 H 0.40 1.91 8.84 -40.82 -0.36 1.55 16 29 H 0.40 1.91 8.84 -40.82 -0.36 1.55 16 30 H 0.13 1.11 8.06 -52.48 -0.42 0.69 16 31 H 0.14 1.79 7.56 -52.48 -0.40 1.40 16 LS Contribution 286.77 15.07 4.32 4.32 Total: -1.00 -35.45 286.77 -8.43 -43.88 By element: Atomic # 1 Polarization: 5.31 SS G_CDS: -3.59 Total: 1.72 kcal Atomic # 6 Polarization: -35.61 SS G_CDS: -2.65 Total: -38.26 kcal Atomic # 7 Polarization: -32.34 SS G_CDS: 1.03 Total: -31.30 kcal Atomic # 8 Polarization: -40.00 SS G_CDS: -1.97 Total: -41.97 kcal Atomic # 14 Polarization: 21.22 SS G_CDS: -5.02 Total: 16.19 kcal Atomic # 16 Polarization: 45.96 SS G_CDS: -0.55 Total: 45.41 kcal Total LS contribution 4.32 Total: 4.32 kcal Total: -35.45 -8.43 -43.88 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000042193127.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.188 kcal (2) G-P(sol) polarization free energy of solvation -35.445 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.633 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.435 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.880 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.068 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds