Wall clock time and date at job start Mon Mar 30 2020 04:42:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31525 * 1 3 3 Si 1.86797 * 119.99820 * 2 1 4 4 H 1.48505 * 109.46988 * 180.02562 * 3 2 1 5 5 H 1.48505 * 109.47073 * 299.99901 * 3 2 1 6 6 H 1.48498 * 109.47349 * 60.00153 * 3 2 1 7 7 C 1.37874 * 119.99721 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99803 * 179.97438 * 7 2 1 9 9 C 1.50700 * 120.00220 * 0.02562 * 7 2 1 10 10 C 1.53000 * 109.47023 * 180.02562 * 9 7 2 11 11 S 1.81396 * 109.47186 * 179.97438 * 10 9 7 12 12 O 1.42098 * 110.54460 * 68.37112 * 11 10 9 13 13 O 1.42097 * 110.54211 * 291.62079 * 11 10 9 14 14 C 1.76195 * 104.45167 * 179.97438 * 11 10 9 15 15 C 1.38293 * 119.92587 * 89.99956 * 14 11 10 16 16 C 1.38103 * 120.07544 * 180.02562 * 15 14 11 17 17 C 1.38914 * 119.92585 * 0.02562 * 16 15 14 18 18 N 1.39671 * 120.07130 * 179.97438 * 17 16 15 19 19 C 1.38912 * 119.84788 * 0.25342 * 17 16 15 20 20 C 1.38098 * 119.92495 * 359.48977 * 19 17 16 21 21 H 0.96998 * 119.99465 * 0.02562 * 1 2 3 22 22 H 1.08996 * 109.47206 * 59.99773 * 9 7 2 23 23 H 1.08997 * 109.47337 * 299.99567 * 9 7 2 24 24 H 1.08996 * 109.47320 * 59.99836 * 10 9 7 25 25 H 1.09004 * 109.47055 * 299.99850 * 10 9 7 26 26 H 1.08001 * 119.95790 * 359.97438 * 15 14 11 27 27 H 1.07999 * 120.03416 * 179.97438 * 16 15 14 28 28 H 0.97001 * 120.00529 * 0.02562 * 18 17 16 29 29 H 0.97005 * 119.99745 * 179.72366 * 18 17 16 30 30 H 1.08005 * 120.03088 * 179.72680 * 19 17 16 31 31 H 1.08005 * 119.96252 * 180.25688 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3153 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3464 -0.0006 5 1 1.8904 2.3964 -1.2126 6 1 1.8905 2.3964 1.2125 7 6 2.0046 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4991 0.0005 10 6 2.2453 -3.6621 0.0018 11 16 1.3383 -5.2330 0.0026 12 8 0.6648 -5.4206 -1.2345 13 8 0.6639 -5.4188 1.2394 14 6 2.5961 -6.4669 0.0033 15 6 3.0886 -6.9494 1.2021 16 6 4.0748 -7.9162 1.2062 17 6 4.5725 -8.4035 0.0044 18 7 5.5704 -9.3809 0.0051 19 6 4.0797 -7.9124 -1.1979 20 6 3.0898 -6.9496 -1.1949 21 1 -0.4849 0.8401 -0.0004 22 1 0.6247 -2.5571 -0.8896 23 1 0.6241 -2.5568 0.8903 24 1 2.8713 -3.6039 0.8922 25 1 2.8726 -3.6047 -0.8877 26 1 2.7020 -6.5691 2.1361 27 1 4.4592 -8.2922 2.1428 28 1 5.9163 -9.7203 0.8453 29 1 5.9143 -9.7233 -0.8348 30 1 4.4678 -8.2861 -2.1341 31 1 2.7033 -6.5704 -2.1294 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000042193127.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:42:17 Heat of formation + Delta-G solvation = -84.232412 kcal Electronic energy + Delta-G solvation = -16226.653884 eV Core-core repulsion = 13405.610435 eV Total energy + Delta-G solvation = -2821.043449 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 255.072 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.28230 -38.01374 -36.87163 -35.85871 -35.60154 -33.08763 -31.94880 -29.90398 -27.53914 -23.92374 -23.90231 -23.06454 -19.90254 -19.10150 -18.44931 -17.93792 -17.65466 -16.84420 -16.70908 -16.47450 -15.41599 -15.26917 -14.92886 -14.50483 -14.37274 -14.32040 -13.95951 -13.66705 -13.05737 -12.96816 -12.91505 -12.75090 -12.21405 -12.10855 -12.10066 -12.03982 -11.76132 -11.55596 -10.94458 -10.62562 -10.02364 -8.78917 -8.23151 -6.37141 -0.72092 0.11489 0.41824 1.43010 1.43816 1.57234 2.20187 2.40527 2.58778 2.85831 3.08497 3.10215 3.31219 3.84030 4.01148 4.10653 4.16687 4.37891 4.55915 4.70469 4.80298 5.01139 5.13134 5.20958 5.28572 5.31597 5.33750 5.71686 5.78124 6.09217 6.41498 6.76755 6.89122 7.32825 8.89386 Molecular weight = 255.07amu Principal moments of inertia in cm(-1) A = 0.034090 B = 0.004925 C = 0.004645 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 821.152909 B = 5683.830090 C = 6026.488582 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.004 4.004 3 Si 0.975 3.025 4 H -0.256 1.256 5 H -0.278 1.278 6 H -0.278 1.278 7 C -0.538 4.538 8 H 0.076 0.924 9 C 0.017 3.983 10 C -0.566 4.566 11 S 2.496 3.504 12 O -0.986 6.986 13 O -0.986 6.986 14 C -0.719 4.719 15 C 0.008 3.992 16 C -0.221 4.221 17 C 0.265 3.735 18 N -0.850 5.850 19 C -0.221 4.221 20 C 0.008 3.992 21 H 0.267 0.733 22 H 0.009 0.991 23 H 0.009 0.991 24 H 0.144 0.856 25 H 0.144 0.856 26 H 0.142 0.858 27 H 0.156 0.844 28 H 0.413 0.587 29 H 0.413 0.587 30 H 0.156 0.844 31 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.579 -18.109 0.012 23.249 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.574 5.574 2 C -0.202 4.202 3 Si 0.799 3.201 4 H -0.179 1.179 5 H -0.204 1.204 6 H -0.203 1.203 7 C -0.577 4.577 8 H 0.094 0.906 9 C -0.022 4.022 10 C -0.698 4.698 11 S 2.685 3.315 12 O -0.983 6.983 13 O -0.983 6.983 14 C -0.812 4.812 15 C -0.012 4.012 16 C -0.245 4.245 17 C 0.155 3.845 18 N -0.388 5.388 19 C -0.245 4.245 20 C -0.012 4.012 21 H 0.076 0.924 22 H 0.027 0.973 23 H 0.027 0.973 24 H 0.162 0.838 25 H 0.162 0.838 26 H 0.160 0.840 27 H 0.173 0.827 28 H 0.244 0.756 29 H 0.244 0.756 30 H 0.173 0.827 31 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges 13.539 -18.197 0.012 22.681 hybrid contribution 0.797 0.734 0.000 1.083 sum 14.336 -17.463 0.012 22.594 Atomic orbital electron populations 1.70120 1.08080 1.28231 1.51004 1.26122 0.95857 1.03865 0.94396 0.85247 0.79133 0.77954 0.77787 1.17948 1.20360 1.20350 1.21555 0.94028 0.90734 1.51371 0.90562 1.18895 0.93709 0.92978 0.96608 1.30100 1.12352 1.14770 1.12562 1.04887 0.76421 0.77152 0.73043 1.93443 1.73052 1.86059 1.45775 1.93443 1.73004 1.86085 1.45791 1.29798 1.26240 1.24541 1.00625 1.20888 0.91560 0.92454 0.96338 1.20950 1.02458 1.03069 0.98015 1.18153 0.86301 0.86347 0.93687 1.42638 1.40931 1.42352 1.12854 1.20950 1.02420 1.03111 0.98007 1.20884 0.91542 0.92460 0.96348 0.92410 0.97295 0.97303 0.83799 0.83789 0.84038 0.82667 0.75624 0.75625 0.82664 0.84038 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.49 13.29 21.45 0.28 -57.21 16 2 C 0.00 -0.24 5.46 84.65 0.46 0.22 16 3 Si 0.98 43.66 29.54 68.60 2.03 45.69 16 4 H -0.26 -10.68 7.11 99.48 0.71 -9.97 16 5 H -0.28 -12.16 7.11 99.48 0.71 -11.45 16 6 H -0.28 -12.15 7.11 99.48 0.71 -11.45 16 7 C -0.54 -30.24 9.11 25.60 0.23 -30.01 16 8 H 0.08 3.96 7.74 -2.91 -0.02 3.94 16 9 C 0.02 0.89 4.98 29.85 0.15 1.03 16 10 C -0.57 -22.33 5.92 71.98 0.43 -21.90 16 11 S 2.50 96.03 5.15 -56.49 -0.29 95.74 16 12 O -0.99 -43.36 17.12 -127.65 -2.19 -45.55 16 13 O -0.99 -43.36 17.12 -127.65 -2.19 -45.55 16 14 C -0.72 -21.64 5.66 22.29 0.13 -21.52 16 15 C 0.01 0.20 9.46 22.25 0.21 0.41 16 16 C -0.22 -4.36 9.90 22.40 0.22 -4.14 16 17 C 0.27 4.59 6.75 38.22 0.26 4.85 16 18 N -0.85 -7.25 9.09 -51.37 -0.47 -7.72 16 19 C -0.22 -4.36 9.90 22.40 0.22 -4.14 16 20 C 0.01 0.20 9.46 22.25 0.21 0.41 16 21 H 0.27 15.29 8.31 -92.71 -0.77 14.52 16 22 H 0.01 0.50 8.14 -2.39 -0.02 0.48 16 23 H 0.01 0.50 8.14 -2.39 -0.02 0.48 16 24 H 0.14 4.95 8.14 -2.39 -0.02 4.93 16 25 H 0.14 4.95 8.14 -2.39 -0.02 4.94 16 26 H 0.14 3.55 7.57 -2.91 -0.02 3.53 16 27 H 0.16 2.08 8.06 -2.91 -0.02 2.05 16 28 H 0.41 1.86 8.84 -92.71 -0.82 1.04 16 29 H 0.41 1.86 8.84 -92.70 -0.82 1.04 16 30 H 0.16 2.08 8.06 -2.91 -0.02 2.05 16 31 H 0.14 3.55 7.56 -2.91 -0.02 3.53 16 Total: -1.00 -78.93 286.77 -0.78 -79.71 By element: Atomic # 1 Polarization: 10.15 SS G_CDS: -0.48 Total: 9.67 kcal Atomic # 6 Polarization: -77.31 SS G_CDS: 2.52 Total: -74.79 kcal Atomic # 7 Polarization: -64.74 SS G_CDS: -0.18 Total: -64.93 kcal Atomic # 8 Polarization: -86.72 SS G_CDS: -4.37 Total: -91.09 kcal Atomic # 14 Polarization: 43.66 SS G_CDS: 2.03 Total: 45.69 kcal Atomic # 16 Polarization: 96.03 SS G_CDS: -0.29 Total: 95.74 kcal Total: -78.93 -0.78 -79.71 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000042193127.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.525 kcal (2) G-P(sol) polarization free energy of solvation -78.928 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.453 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.779 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.708 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.232 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds