Wall clock time and date at job start Mon Mar 30 2020 04:58:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09001 * 109.47382 * 2 1 4 4 N 1.46494 * 109.47275 * 239.98982 * 2 1 3 5 5 S 1.65608 * 119.99583 * 95.00419 * 4 2 1 6 6 O 1.42102 * 106.39826 * 178.53759 * 5 4 2 7 7 O 1.42099 * 106.40116 * 311.45886 * 5 4 2 8 8 C 1.76203 * 107.21790 * 65.00194 * 5 4 2 9 9 H 1.08003 * 120.00020 * 359.97438 * 8 5 4 10 10 C 1.37878 * 119.99833 * 180.02562 * 8 5 4 11 11 N 1.31513 * 119.99769 * 180.02562 * 10 8 5 12 12 Si 1.86800 * 119.99900 * 359.97438 * 10 8 5 13 13 H 1.48495 * 109.47403 * 90.00357 * 12 10 8 14 14 H 1.48504 * 109.46838 * 210.00361 * 12 10 8 15 15 H 1.48501 * 109.47381 * 329.99735 * 12 10 8 16 16 C 1.50699 * 109.46681 * 119.99117 * 2 1 3 17 17 C 1.38237 * 119.99828 * 79.72909 * 16 2 1 18 18 C 1.38241 * 120.00168 * 179.80913 * 17 16 2 19 19 C 1.38236 * 119.99661 * 0.39474 * 18 17 16 20 20 C 1.38234 * 120.00359 * 359.85676 * 19 18 17 21 21 C 1.38238 * 120.00359 * 259.99869 * 16 2 1 22 22 H 1.09000 * 109.46714 * 60.00354 * 1 2 3 23 23 H 1.08990 * 109.47196 * 180.02562 * 1 2 3 24 24 H 1.09005 * 109.47015 * 300.00812 * 1 2 3 25 25 H 0.96995 * 120.00292 * 275.27882 * 4 2 1 26 26 H 0.97003 * 119.99750 * 180.02562 * 11 10 8 27 27 H 1.07997 * 120.00091 * 359.97438 * 17 16 2 28 28 H 1.07997 * 119.99867 * 180.23239 * 18 17 16 29 29 H 1.08006 * 119.99779 * 179.83661 * 19 18 17 30 30 H 1.07999 * 120.00401 * 179.97438 * 20 19 18 31 31 H 1.07999 * 119.99677 * 359.97438 * 21 16 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0184 -0.6908 -1.1960 5 16 2.4123 0.1769 -2.5504 6 8 2.8778 -0.7639 -3.5082 7 8 1.3248 1.0590 -2.7922 8 6 3.7929 1.1907 -2.1371 9 1 4.2100 1.1554 -1.1415 10 6 4.3402 2.0298 -3.0845 11 7 5.3710 2.7861 -2.7761 12 14 3.6184 2.0913 -4.8063 13 1 2.5569 3.1283 -4.8613 14 1 4.6885 2.4262 -5.7799 15 1 3.0361 0.7683 -5.1465 16 6 2.0322 -0.7102 1.2306 17 6 2.0613 -2.0918 1.2678 18 6 2.5257 -2.7433 2.3951 19 6 2.9533 -2.0134 3.4883 20 6 2.9194 -0.6319 3.4532 21 6 2.4586 0.0197 2.3244 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3633 -1.0276 0.0005 24 1 -0.3633 0.5140 0.8900 25 1 2.1072 -1.6567 -1.1959 26 1 5.7558 3.3767 -3.4425 27 1 1.7237 -2.6621 0.4151 28 1 2.5519 -3.8227 2.4226 29 1 3.3137 -2.5224 4.3701 30 1 3.2531 -0.0616 4.3074 31 1 2.4322 1.0990 2.2968 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000044509350.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:58:33 Heat of formation + Delta-G solvation = -61.164671 kcal Electronic energy + Delta-G solvation = -16936.585327 eV Core-core repulsion = 14116.542170 eV Total energy + Delta-G solvation = -2820.043156 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 255.072 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -39.33413 -35.88829 -35.38173 -34.41075 -33.02174 -30.94245 -30.44955 -28.62239 -26.40410 -23.51096 -22.48918 -20.55565 -19.14500 -17.51899 -17.10758 -16.50855 -15.58077 -15.20949 -14.85333 -14.30749 -13.81643 -13.48155 -13.36562 -13.23173 -13.13438 -12.81002 -12.39005 -11.95204 -11.56526 -11.37644 -11.35192 -10.93950 -10.84856 -10.59964 -10.53074 -10.41004 -9.82835 -9.28635 -9.20147 -8.79798 -8.69390 -8.52957 -6.79307 -5.33068 1.45983 1.52184 2.11015 3.08050 3.18471 3.27790 3.89730 3.96267 4.35030 4.60991 4.82756 4.99398 5.08438 5.22316 5.33709 5.51546 5.56315 5.64081 5.70331 5.84756 6.07333 6.10183 6.16163 6.24845 6.48298 6.50739 6.60455 6.64100 6.88321 7.11846 7.48686 7.72696 8.22702 8.71799 10.33039 Molecular weight = 255.07amu Principal moments of inertia in cm(-1) A = 0.031335 B = 0.007058 C = 0.006519 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 893.342888 B = 3966.320313 C = 4294.330748 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.194 3.806 3 H 0.100 0.900 4 N -1.118 6.118 5 S 2.675 3.325 6 O -1.009 7.009 7 O -1.009 7.009 8 C -1.016 5.016 9 H 0.122 0.878 10 C 0.153 3.847 11 N -0.823 5.823 12 Si 0.802 3.198 13 H -0.246 1.246 14 H -0.255 1.255 15 H -0.220 1.220 16 C -0.076 4.076 17 C -0.111 4.111 18 C -0.121 4.121 19 C -0.128 4.128 20 C -0.119 4.119 21 C -0.110 4.110 22 H 0.077 0.923 23 H 0.055 0.945 24 H 0.062 0.938 25 H 0.404 0.596 26 H 0.280 0.720 27 H 0.121 0.879 28 H 0.119 0.881 29 H 0.117 0.883 30 H 0.120 0.880 31 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.120 -6.837 10.386 13.859 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.086 3.914 3 H 0.118 0.882 4 N -0.873 5.873 5 S 2.777 3.223 6 O -1.000 7.000 7 O -0.999 6.999 8 C -1.150 5.150 9 H 0.139 0.861 10 C -0.066 4.066 11 N -0.452 5.452 12 Si 0.622 3.378 13 H -0.170 1.170 14 H -0.179 1.179 15 H -0.142 1.142 16 C -0.077 4.077 17 C -0.129 4.129 18 C -0.139 4.139 19 C -0.147 4.147 20 C -0.137 4.137 21 C -0.129 4.129 22 H 0.096 0.904 23 H 0.074 0.926 24 H 0.081 0.919 25 H 0.236 0.764 26 H 0.091 0.909 27 H 0.139 0.861 28 H 0.137 0.863 29 H 0.135 0.865 30 H 0.138 0.862 31 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -6.467 -6.567 9.509 13.243 hybrid contribution 0.565 -0.020 -0.222 0.608 sum -5.901 -6.586 9.287 12.824 Atomic orbital electron populations 1.22319 0.94705 1.02264 1.03088 1.19552 0.93872 0.96060 0.81895 0.88168 1.55682 1.83572 1.18441 1.29585 1.01372 0.75770 0.74025 0.71179 1.93474 1.82817 1.64645 1.59033 1.93406 1.56648 1.65945 1.83924 1.30475 1.35253 1.39672 1.09643 0.86052 1.24427 0.92364 0.91451 0.98371 1.69993 1.19140 1.20318 1.35780 0.87860 0.81691 0.83925 0.84337 1.16974 1.17949 1.14245 1.20138 0.98143 0.94043 0.95415 1.20941 0.99910 0.94013 0.98073 1.21090 0.99482 0.99655 0.93652 1.21097 1.00781 0.94272 0.98501 1.21108 0.99899 0.94582 0.98124 1.21104 0.98535 1.00231 0.93007 0.90408 0.92554 0.91930 0.76388 0.90935 0.86118 0.86283 0.86459 0.86168 0.85601 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.44 9.49 37.16 0.35 -2.09 16 2 C 0.19 3.29 2.97 -69.09 -0.21 3.08 16 3 H 0.10 1.81 7.71 -51.93 -0.40 1.41 16 4 N -1.12 -21.35 5.42 -5.88 -0.03 -21.38 16 5 S 2.67 66.31 4.15 -107.50 -0.45 65.87 16 6 O -1.01 -27.16 16.02 -57.17 -0.92 -28.07 16 7 O -1.01 -26.33 16.09 -57.17 -0.92 -27.25 16 8 C -1.02 -28.32 10.12 30.60 0.31 -28.02 16 9 H 0.12 3.43 8.06 -52.48 -0.42 3.00 16 10 C 0.15 4.41 5.47 -17.82 -0.10 4.32 16 11 N -0.82 -23.82 13.96 55.43 0.77 -23.05 16 12 Si 0.80 20.65 26.54 -169.99 -4.51 16.14 16 13 H -0.25 -6.16 7.11 56.52 0.40 -5.76 16 14 H -0.26 -6.05 7.11 56.52 0.40 -5.65 16 15 H -0.22 -5.79 5.61 56.52 0.32 -5.47 16 16 C -0.08 -1.14 4.95 -104.62 -0.52 -1.66 16 17 C -0.11 -1.51 9.15 -39.58 -0.36 -1.87 16 18 C -0.12 -1.45 10.05 -39.58 -0.40 -1.84 16 19 C -0.13 -1.48 10.05 -39.58 -0.40 -1.88 16 20 C -0.12 -1.45 10.05 -39.58 -0.40 -1.85 16 21 C -0.11 -1.53 9.67 -39.58 -0.38 -1.92 16 22 H 0.08 1.28 7.64 -51.93 -0.40 0.88 16 23 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 24 H 0.06 0.79 8.14 -51.93 -0.42 0.36 16 25 H 0.40 6.67 7.10 -34.48 -0.24 6.43 16 26 H 0.28 7.36 8.31 -40.82 -0.34 7.02 16 27 H 0.12 1.48 6.83 -52.49 -0.36 1.12 16 28 H 0.12 1.14 8.06 -52.49 -0.42 0.71 16 29 H 0.12 1.06 8.06 -52.48 -0.42 0.63 16 30 H 0.12 1.18 8.06 -52.49 -0.42 0.76 16 31 H 0.13 1.61 8.04 -52.49 -0.42 1.18 16 LS Contribution 278.12 15.07 4.19 4.19 Total: -1.00 -32.78 278.12 -7.54 -40.31 By element: Atomic # 1 Polarization: 10.54 SS G_CDS: -3.58 Total: 6.96 kcal Atomic # 6 Polarization: -31.62 SS G_CDS: -2.10 Total: -33.72 kcal Atomic # 7 Polarization: -45.17 SS G_CDS: 0.74 Total: -44.43 kcal Atomic # 8 Polarization: -53.48 SS G_CDS: -1.84 Total: -55.32 kcal Atomic # 14 Polarization: 20.65 SS G_CDS: -4.51 Total: 16.14 kcal Atomic # 16 Polarization: 66.31 SS G_CDS: -0.45 Total: 65.87 kcal Total LS contribution 4.19 Total: 4.19 kcal Total: -32.78 -7.54 -40.31 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000044509350.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.851 kcal (2) G-P(sol) polarization free energy of solvation -32.778 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.629 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.536 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.314 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.165 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds