Wall clock time and date at job start Mon Mar 30 2020 04:47:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50691 * 1 3 3 C 1.38127 * 120.04013 * 2 1 4 4 C 1.38259 * 120.07752 * 179.97438 * 3 2 1 5 5 C 1.38306 * 120.14966 * 359.97438 * 4 3 2 6 6 C 1.38085 * 120.07542 * 0.02562 * 5 4 3 7 7 C 1.38894 * 120.03876 * 179.97438 * 2 1 3 8 8 N 1.39670 * 120.07267 * 0.04219 * 7 2 1 9 9 C 1.46503 * 120.00010 * 264.97863 * 8 7 2 10 10 S 1.65604 * 119.99946 * 84.98193 * 8 7 2 11 11 O 1.42100 * 106.40387 * 203.54001 * 10 8 7 12 12 O 1.42100 * 106.39808 * 336.45607 * 10 8 7 13 13 C 1.76197 * 107.21824 * 89.99851 * 10 8 7 14 14 H 1.07999 * 120.00124 * 359.97438 * 13 10 8 15 15 C 1.37873 * 120.00018 * 180.02562 * 13 10 8 16 16 N 1.31514 * 120.00349 * 179.97438 * 15 13 10 17 17 Si 1.86802 * 119.99901 * 359.97438 * 15 13 10 18 18 H 1.48501 * 109.47190 * 90.00223 * 17 15 13 19 19 H 1.48505 * 109.47267 * 210.00406 * 17 15 13 20 20 H 1.48501 * 109.47320 * 330.00148 * 17 15 13 21 21 H 1.09002 * 109.47718 * 270.02603 * 1 2 3 22 22 H 1.09001 * 109.47460 * 30.02673 * 1 2 3 23 23 H 1.08998 * 109.47084 * 150.02261 * 1 2 3 24 24 H 1.07998 * 119.96050 * 359.96813 * 3 2 1 25 25 H 1.08006 * 119.92718 * 180.02562 * 4 3 2 26 26 H 1.08001 * 119.96393 * 180.28488 * 5 4 3 27 27 H 1.07996 * 120.03483 * 180.02562 * 6 5 4 28 28 H 1.09005 * 109.47021 * 90.00477 * 9 8 7 29 29 H 1.09003 * 109.46637 * 209.99858 * 9 8 7 30 30 H 1.08992 * 109.47135 * 330.00327 * 9 8 7 31 31 H 0.97004 * 119.99894 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1984 1.1957 0.0000 4 6 3.5810 1.1966 0.0005 5 6 4.2764 0.0011 0.0016 6 6 3.5915 -1.1979 0.0016 7 6 2.2022 -1.2024 0.0005 8 7 1.5062 -2.4133 0.0002 9 6 1.2366 -3.1036 1.2640 10 16 0.9857 -3.0688 -1.4288 11 8 -0.1030 -3.9229 -1.1055 12 8 0.8817 -1.9917 -2.3498 13 6 2.2755 -4.1107 -2.0251 14 1 3.1909 -4.2135 -1.4612 15 6 2.1166 -4.7939 -3.2120 16 7 3.0794 -5.5711 -3.6574 17 14 0.5336 -4.6155 -4.1877 18 1 0.6655 -3.4861 -5.1429 19 1 0.2703 -5.8699 -4.9376 20 1 -0.5934 -4.3486 -3.2582 21 1 -0.3634 0.0005 1.0276 22 1 -0.3634 0.8897 -0.5142 23 1 -0.3633 -0.8902 -0.5135 24 1 1.6584 2.1310 -0.0005 25 1 4.1192 2.1330 0.0010 26 1 5.3564 0.0053 0.0067 27 1 4.1352 -2.1310 0.0029 28 1 0.2821 -2.7647 1.6667 29 1 1.1960 -4.1788 1.0891 30 1 2.0311 -2.8810 1.9762 31 1 2.9674 -6.0521 -4.4924 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000049990623.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:47:07 Heat of formation + Delta-G solvation = -49.042871 kcal Electronic energy + Delta-G solvation = -17502.113067 eV Core-core repulsion = 14682.595551 eV Total energy + Delta-G solvation = -2819.517516 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 255.072 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -39.31756 -35.71289 -35.26383 -34.47511 -33.04698 -32.31941 -29.66784 -26.83198 -26.40921 -25.34673 -22.02545 -21.05720 -18.84151 -17.77398 -16.83724 -16.21124 -15.47124 -15.30920 -15.00061 -14.12840 -13.56697 -13.49725 -13.27810 -13.06403 -12.84147 -12.73154 -12.32067 -12.06020 -11.72443 -11.53990 -11.32947 -11.00998 -10.91457 -10.79486 -10.60344 -10.46575 -9.89596 -9.22801 -9.20959 -8.59082 -8.45361 -8.18951 -6.82161 -5.36015 1.49889 1.69464 2.02086 3.05100 3.16304 3.24384 3.93299 3.95407 4.18165 4.57515 5.12663 5.16021 5.29742 5.31242 5.41772 5.56022 5.75473 5.83318 5.88032 5.94760 6.00755 6.06371 6.15467 6.18715 6.46191 6.47449 6.70885 6.76620 6.94357 7.09945 7.46330 7.63872 8.18797 8.68288 10.30168 Molecular weight = 255.07amu Principal moments of inertia in cm(-1) A = 0.028103 B = 0.009127 C = 0.008494 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 996.112790 B = 3066.916752 C = 3295.794434 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.073 4.073 3 C -0.119 4.119 4 C -0.120 4.120 5 C -0.122 4.122 6 C -0.108 4.108 7 C 0.158 3.842 8 N -0.963 5.963 9 C 0.102 3.898 10 S 2.669 3.331 11 O -1.002 7.002 12 O -0.996 6.996 13 C -1.014 5.014 14 H 0.121 0.879 15 C 0.154 3.846 16 N -0.822 5.822 17 Si 0.799 3.201 18 H -0.245 1.245 19 H -0.253 1.253 20 H -0.220 1.220 21 H 0.069 0.931 22 H 0.068 0.932 23 H 0.060 0.940 24 H 0.122 0.878 25 H 0.120 0.880 26 H 0.122 0.878 27 H 0.130 0.870 28 H 0.050 0.950 29 H 0.078 0.922 30 H 0.064 0.936 31 H 0.281 0.719 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.395 9.600 8.513 12.837 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.075 4.075 3 C -0.137 4.137 4 C -0.138 4.138 5 C -0.141 4.141 6 C -0.128 4.128 7 C 0.065 3.935 8 N -0.793 5.793 9 C -0.042 4.042 10 S 2.773 3.227 11 O -0.992 6.992 12 O -0.987 6.987 13 C -1.148 5.148 14 H 0.139 0.861 15 C -0.066 4.066 16 N -0.451 5.451 17 Si 0.619 3.381 18 H -0.168 1.168 19 H -0.177 1.177 20 H -0.142 1.142 21 H 0.087 0.913 22 H 0.087 0.913 23 H 0.079 0.921 24 H 0.140 0.860 25 H 0.138 0.862 26 H 0.140 0.860 27 H 0.148 0.852 28 H 0.069 0.931 29 H 0.097 0.903 30 H 0.083 0.917 31 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -1.201 9.593 8.042 12.575 hybrid contribution 0.234 -0.479 -0.576 0.785 sum -0.967 9.114 7.466 11.821 Atomic orbital electron populations 1.20703 0.91358 1.02935 1.01624 1.20154 0.96314 0.92586 0.98487 1.20846 0.94194 0.96841 1.01858 1.21085 0.94169 0.97877 1.00718 1.20983 0.99706 0.92082 1.01330 1.21536 0.93553 0.98939 0.98801 1.17119 0.90221 0.84766 1.01423 1.55269 1.71796 1.29443 1.22827 1.21410 1.00406 0.97300 0.85103 1.01811 0.75509 0.74205 0.71173 1.93467 1.54800 1.67424 1.83553 1.93424 1.88091 1.56748 1.60397 1.30457 1.21696 1.44583 1.18085 0.86069 1.24413 0.96324 0.90877 0.94975 1.69983 1.31822 1.23014 1.20252 0.87899 0.84526 0.81141 0.84544 1.16846 1.17725 1.14244 0.91281 0.91294 0.92141 0.86043 0.86222 0.85955 0.85226 0.93122 0.90312 0.91706 0.90857 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.77 9.76 36.00 0.35 -1.41 16 2 C -0.07 -1.27 5.75 -104.42 -0.60 -1.87 16 3 C -0.12 -1.73 9.70 -39.61 -0.38 -2.12 16 4 C -0.12 -1.63 10.04 -39.55 -0.40 -2.02 16 5 C -0.12 -1.79 10.04 -39.61 -0.40 -2.19 16 6 C -0.11 -1.89 9.97 -39.38 -0.39 -2.29 16 7 C 0.16 3.05 4.54 -83.79 -0.38 2.67 16 8 N -0.96 -19.92 2.36 -65.39 -0.15 -20.08 16 9 C 0.10 1.71 10.28 59.85 0.62 2.32 16 10 S 2.67 69.00 3.33 -107.50 -0.36 68.64 16 11 O -1.00 -27.15 15.09 -57.17 -0.86 -28.01 16 12 O -1.00 -27.30 15.17 -57.17 -0.87 -28.16 16 13 C -1.01 -28.88 10.29 30.60 0.31 -28.56 16 14 H 0.12 3.46 8.06 -52.49 -0.42 3.04 16 15 C 0.15 4.48 5.47 -17.82 -0.10 4.39 16 16 N -0.82 -23.92 13.96 55.43 0.77 -23.15 16 17 Si 0.80 20.84 26.54 -169.99 -4.51 16.33 16 18 H -0.24 -6.24 7.11 56.52 0.40 -5.84 16 19 H -0.25 -6.02 7.11 56.52 0.40 -5.62 16 20 H -0.22 -5.84 5.61 56.52 0.32 -5.52 16 21 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 22 H 0.07 0.96 8.09 -51.93 -0.42 0.54 16 23 H 0.06 1.14 5.92 -51.93 -0.31 0.83 16 24 H 0.12 1.41 8.06 -52.49 -0.42 0.99 16 25 H 0.12 1.23 8.06 -52.48 -0.42 0.81 16 26 H 0.12 1.45 8.06 -52.49 -0.42 1.02 16 27 H 0.13 2.23 8.06 -52.49 -0.42 1.81 16 28 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 29 H 0.08 1.34 7.79 -51.93 -0.40 0.94 16 30 H 0.06 0.89 8.05 -51.93 -0.42 0.48 16 31 H 0.28 7.41 8.31 -40.82 -0.34 7.07 16 LS Contribution 276.85 15.07 4.17 4.17 Total: -1.00 -33.06 276.85 -6.91 -39.97 By element: Atomic # 1 Polarization: 5.10 SS G_CDS: -3.73 Total: 1.38 kcal Atomic # 6 Polarization: -29.72 SS G_CDS: -1.37 Total: -31.09 kcal Atomic # 7 Polarization: -43.85 SS G_CDS: 0.62 Total: -43.23 kcal Atomic # 8 Polarization: -54.44 SS G_CDS: -1.73 Total: -56.17 kcal Atomic # 14 Polarization: 20.84 SS G_CDS: -4.51 Total: 16.33 kcal Atomic # 16 Polarization: 69.00 SS G_CDS: -0.36 Total: 68.64 kcal Total LS contribution 4.17 Total: 4.17 kcal Total: -33.06 -6.91 -39.97 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000049990623.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.073 kcal (2) G-P(sol) polarization free energy of solvation -33.064 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.136 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.906 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.970 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.043 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds