Wall clock time and date at job start Mon Mar 30 2020 04:47:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38307 * 119.95844 * 2 1 4 4 C 1.38263 * 120.15008 * 179.97438 * 3 2 1 5 5 C 1.38129 * 120.07107 * 0.30575 * 4 3 2 6 6 C 1.38893 * 119.92549 * 359.44161 * 5 4 3 7 7 N 1.39670 * 120.07592 * 180.27824 * 6 5 4 8 8 C 1.46501 * 120.00106 * 122.37212 * 7 6 5 9 9 S 1.65596 * 120.00110 * 302.37437 * 7 6 5 10 10 O 1.42101 * 106.40643 * 208.60537 * 9 7 6 11 11 O 1.42108 * 106.40167 * 341.52637 * 9 7 6 12 12 C 1.76205 * 107.21945 * 95.06500 * 9 7 6 13 13 H 1.08001 * 119.99752 * 359.97438 * 12 9 7 14 14 C 1.37878 * 120.00240 * 180.02562 * 12 9 7 15 15 N 1.31513 * 120.00009 * 179.97438 * 14 12 9 16 16 Si 1.86802 * 119.99992 * 0.02562 * 14 12 9 17 17 H 1.48503 * 109.47247 * 89.99609 * 16 14 12 18 18 H 1.48495 * 109.47251 * 210.00072 * 16 14 12 19 19 H 1.48507 * 109.46983 * 330.00235 * 16 14 12 20 20 C 1.38081 * 119.96486 * 180.02562 * 2 1 3 21 21 H 1.09007 * 109.47356 * 90.00188 * 1 2 3 22 22 H 1.09000 * 109.46904 * 209.99515 * 1 2 3 23 23 H 1.09000 * 109.47762 * 329.99663 * 1 2 3 24 24 H 1.08004 * 119.92441 * 0.02562 * 3 2 1 25 25 H 1.08003 * 119.96340 * 180.02562 * 4 3 2 26 26 H 1.08001 * 120.03419 * 179.72269 * 5 4 3 27 27 H 1.08997 * 109.46620 * 90.00097 * 8 7 6 28 28 H 1.08996 * 109.47062 * 210.00391 * 8 7 6 29 29 H 1.08998 * 109.47079 * 330.00594 * 8 7 6 30 30 H 0.97000 * 119.99618 * 179.97438 * 15 14 12 31 31 H 1.07999 * 120.03312 * 359.95704 * 20 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1977 1.1983 0.0000 4 6 3.5803 1.2029 0.0005 5 6 4.2764 0.0099 -0.0053 6 6 3.5860 -1.1953 0.0000 7 7 4.2867 -2.4035 0.0000 8 6 4.0708 -3.3756 1.0745 9 16 5.3617 -2.7371 -1.2146 10 8 5.3889 -4.1515 -1.3492 11 8 5.0413 -1.8604 -2.2861 12 6 6.9590 -2.2610 -0.6429 13 1 7.0755 -1.8391 0.3445 14 6 8.0600 -2.4261 -1.4563 15 7 9.2520 -2.0702 -1.0297 16 14 7.8582 -3.1539 -3.1648 17 1 7.6101 -2.0630 -4.1415 18 1 9.0955 -3.8835 -3.5414 19 1 6.7083 -4.0937 -3.1699 20 6 2.1967 -1.1962 -0.0005 21 1 -0.3634 0.0000 -1.0277 22 1 -0.3633 -0.8900 0.5138 23 1 -0.3634 0.8899 0.5139 24 1 1.6558 2.1325 0.0004 25 1 4.1166 2.1404 0.0010 26 1 5.3564 0.0142 -0.0094 27 1 3.2643 -4.0533 0.7946 28 1 4.9850 -3.9462 1.2373 29 1 3.8022 -2.8503 1.9911 30 1 10.0266 -2.1868 -1.6019 31 1 1.6567 -2.1315 -0.0003 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000049990629.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:47:09 Heat of formation + Delta-G solvation = -52.775731 kcal Electronic energy + Delta-G solvation = -17163.578776 eV Core-core repulsion = 14343.899391 eV Total energy + Delta-G solvation = -2819.679385 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 255.072 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -39.25051 -35.75869 -35.55761 -34.49574 -33.08073 -32.24343 -29.61502 -26.92292 -26.43922 -25.55139 -21.82938 -21.38578 -18.66441 -17.65402 -16.78131 -16.35166 -15.59635 -15.43320 -14.77882 -14.09554 -13.77684 -13.54360 -13.44037 -13.15532 -12.79696 -12.76850 -12.37598 -12.15775 -11.79764 -11.53332 -11.40876 -11.07909 -10.87967 -10.81821 -10.65239 -10.50306 -9.91114 -9.45538 -9.24969 -8.86291 -8.43527 -7.87385 -6.85082 -5.40169 1.58387 1.69781 1.94317 3.04016 3.14982 3.23629 3.91517 3.95646 4.13784 4.54336 5.02857 5.10988 5.24094 5.33387 5.44786 5.48821 5.65462 5.74109 5.78684 5.90234 5.92212 5.95088 6.07748 6.12068 6.34163 6.47635 6.71972 6.84495 6.91212 7.11806 7.43228 7.59808 8.15391 8.64946 10.26880 Molecular weight = 255.07amu Principal moments of inertia in cm(-1) A = 0.033051 B = 0.007748 C = 0.007276 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 846.982851 B = 3612.965724 C = 3847.338068 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.082 4.082 3 C -0.137 4.137 4 C -0.098 4.098 5 C -0.128 4.128 6 C 0.177 3.823 7 N -0.958 5.958 8 C 0.098 3.902 9 S 2.667 3.333 10 O -1.000 7.000 11 O -0.995 6.995 12 C -1.014 5.014 13 H 0.123 0.877 14 C 0.155 3.845 15 N -0.820 5.820 16 Si 0.799 3.201 17 H -0.245 1.245 18 H -0.253 1.253 19 H -0.221 1.221 20 C -0.134 4.134 21 H 0.068 0.932 22 H 0.063 0.937 23 H 0.064 0.936 24 H 0.119 0.881 25 H 0.125 0.875 26 H 0.137 0.863 27 H 0.052 0.948 28 H 0.080 0.920 29 H 0.066 0.934 30 H 0.282 0.718 31 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.367 3.609 4.025 13.497 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.083 4.083 3 C -0.155 4.155 4 C -0.117 4.117 5 C -0.149 4.149 6 C 0.082 3.918 7 N -0.785 5.785 8 C -0.046 4.046 9 S 2.771 3.229 10 O -0.991 6.991 11 O -0.986 6.986 12 C -1.149 5.149 13 H 0.141 0.859 14 C -0.065 4.065 15 N -0.449 5.449 16 Si 0.619 3.381 17 H -0.168 1.168 18 H -0.177 1.177 19 H -0.143 1.143 20 C -0.155 4.155 21 H 0.087 0.913 22 H 0.082 0.918 23 H 0.083 0.917 24 H 0.137 0.863 25 H 0.143 0.857 26 H 0.155 0.845 27 H 0.071 0.929 28 H 0.099 0.901 29 H 0.085 0.915 30 H 0.092 0.908 31 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -12.399 3.156 3.212 13.192 hybrid contribution 0.728 -0.062 -0.225 0.764 sum -11.672 3.094 2.986 12.439 Atomic orbital electron populations 1.20749 0.91391 1.02353 1.02156 1.19685 0.95688 0.92801 1.00095 1.20934 0.94212 0.97138 1.03248 1.20958 0.94003 0.97568 0.99188 1.21526 1.01384 0.91592 1.00412 1.17353 0.90694 0.85155 0.98612 1.55493 1.57743 1.23339 1.41970 1.21453 1.02538 0.91180 0.89430 1.01884 0.75410 0.73622 0.72011 1.93471 1.88074 1.32238 1.85270 1.93435 1.85491 1.67165 1.52463 1.30439 1.11997 1.57990 1.14468 0.85882 1.24404 0.94197 0.90201 0.97717 1.69980 0.99062 1.38642 1.37191 0.87897 0.82861 0.82581 0.84778 1.16831 1.17705 1.14273 1.21021 0.92944 0.97899 1.03624 0.91338 0.91795 0.91739 0.86343 0.85730 0.84534 0.92936 0.90087 0.91478 0.90795 0.86067 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.13 10.01 36.01 0.36 -0.77 16 2 C -0.08 -1.16 5.88 -104.65 -0.62 -1.77 16 3 C -0.14 -1.90 9.70 -39.55 -0.38 -2.28 16 4 C -0.10 -1.54 10.04 -39.61 -0.40 -1.94 16 5 C -0.13 -2.45 9.24 -39.38 -0.36 -2.82 16 6 C 0.18 3.43 4.94 -83.79 -0.41 3.01 16 7 N -0.96 -19.94 3.25 -65.40 -0.21 -20.15 16 8 C 0.10 1.65 10.04 59.85 0.60 2.25 16 9 S 2.67 68.70 3.84 -107.50 -0.41 68.29 16 10 O -1.00 -27.17 15.28 -57.17 -0.87 -28.05 16 11 O -1.00 -27.36 15.66 -57.17 -0.90 -28.25 16 12 C -1.01 -28.26 10.08 30.60 0.31 -27.95 16 13 H 0.12 3.44 8.06 -52.49 -0.42 3.01 16 14 C 0.15 4.43 5.47 -17.82 -0.10 4.34 16 15 N -0.82 -23.48 13.96 55.43 0.77 -22.71 16 16 Si 0.80 20.62 26.54 -169.99 -4.51 16.11 16 17 H -0.24 -6.18 7.11 56.52 0.40 -5.77 16 18 H -0.25 -5.96 7.11 56.52 0.40 -5.56 16 19 H -0.22 -5.82 5.61 56.52 0.32 -5.51 16 20 C -0.13 -2.20 9.32 -39.38 -0.37 -2.56 16 21 H 0.07 0.66 8.14 -51.92 -0.42 0.24 16 22 H 0.06 0.59 8.08 -51.93 -0.42 0.17 16 23 H 0.06 0.55 8.08 -51.93 -0.42 0.13 16 24 H 0.12 1.28 8.06 -52.48 -0.42 0.86 16 25 H 0.12 1.62 8.06 -52.48 -0.42 1.20 16 26 H 0.14 2.78 7.85 -52.49 -0.41 2.37 16 27 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 28 H 0.08 1.37 7.92 -51.93 -0.41 0.96 16 29 H 0.07 0.93 8.05 -51.93 -0.42 0.51 16 30 H 0.28 7.31 8.31 -40.82 -0.34 6.97 16 31 H 0.12 1.77 8.06 -52.49 -0.42 1.35 16 LS Contribution 279.88 15.07 4.22 4.22 Total: -1.00 -32.62 279.88 -7.12 -39.74 By element: Atomic # 1 Polarization: 5.13 SS G_CDS: -3.84 Total: 1.29 kcal Atomic # 6 Polarization: -29.13 SS G_CDS: -1.37 Total: -30.49 kcal Atomic # 7 Polarization: -43.42 SS G_CDS: 0.56 Total: -42.86 kcal Atomic # 8 Polarization: -54.53 SS G_CDS: -1.77 Total: -56.30 kcal Atomic # 14 Polarization: 20.62 SS G_CDS: -4.51 Total: 16.11 kcal Atomic # 16 Polarization: 68.70 SS G_CDS: -0.41 Total: 68.29 kcal Total LS contribution 4.22 Total: 4.22 kcal Total: -32.62 -7.12 -39.74 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000049990629.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.032 kcal (2) G-P(sol) polarization free energy of solvation -32.623 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.655 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.121 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.744 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.776 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds