Wall clock time and date at job start Mon Mar 30 2020 04:43:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86805 * 119.99910 * 2 1 4 4 H 1.48497 * 109.46933 * 239.99761 * 3 2 1 5 5 H 1.48501 * 109.47036 * 359.97438 * 3 2 1 6 6 H 1.48496 * 109.47282 * 119.99714 * 3 2 1 7 7 C 1.37879 * 120.00302 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00251 * 180.02562 * 7 2 1 9 9 C 1.50701 * 119.99612 * 0.02562 * 7 2 1 10 10 S 1.81406 * 109.46661 * 179.97438 * 9 7 2 11 11 C 1.81404 * 102.99818 * 180.02562 * 10 9 7 12 12 C 1.50701 * 109.47098 * 180.02562 * 11 10 9 13 13 O 1.21280 * 119.99781 * 359.97438 * 12 11 10 14 14 N 1.34771 * 119.99622 * 180.02562 * 12 11 10 15 15 C 1.46505 * 119.99622 * 179.97438 * 14 12 11 16 16 C 1.50703 * 109.47064 * 179.97438 * 15 14 12 17 17 C 1.34515 * 125.79060 * 89.99944 * 16 15 14 18 18 C 1.41380 * 106.83832 * 179.97438 * 17 16 15 19 19 C 1.34506 * 106.84493 * 359.97438 * 18 17 16 20 20 O 1.34306 * 125.78568 * 269.69282 * 16 15 14 21 21 H 0.97001 * 120.00368 * 0.02562 * 1 2 3 22 22 H 1.09001 * 109.47041 * 60.00281 * 9 7 2 23 23 H 1.08997 * 109.47396 * 299.99759 * 9 7 2 24 24 H 1.09001 * 109.46975 * 59.99875 * 11 10 9 25 25 H 1.09002 * 109.47124 * 299.99996 * 11 10 9 26 26 H 0.96996 * 120.00772 * 359.97438 * 14 12 11 27 27 H 1.09002 * 109.47068 * 299.99729 * 15 14 12 28 28 H 1.09001 * 109.47372 * 59.99816 * 15 14 12 29 29 H 1.07996 * 126.58016 * 0.03378 * 17 16 15 30 30 H 1.08006 * 126.57610 * 179.97438 * 18 17 16 31 31 H 1.08005 * 125.79499 * 180.02562 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2841 2.7465 -0.0006 6 1 3.1028 1.6965 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2510 -2.4991 0.0005 10 16 2.4300 -3.8779 0.0005 11 6 1.3517 -5.3367 -0.0003 12 6 2.1957 -6.5852 0.0003 13 8 3.4055 -6.4993 0.0007 14 7 1.6061 -7.7971 -0.0007 15 6 2.4266 -9.0108 -0.0007 16 6 1.5308 -10.2227 -0.0012 17 6 1.0636 -10.8551 -1.0926 18 6 0.2691 -11.9309 -0.6339 19 6 0.2989 -11.8919 0.7102 20 8 1.0684 -10.8580 1.0880 21 1 -0.4851 0.8400 -0.0004 22 1 0.6248 -2.5571 -0.8897 23 1 0.6241 -2.5567 0.8903 24 1 0.7228 -5.3232 -0.8905 25 1 0.7222 -5.3237 0.8895 26 1 0.6386 -7.8658 -0.0013 27 1 3.0564 -9.0236 -0.8903 28 1 3.0552 -9.0245 0.8897 29 1 1.2587 -10.5921 -2.1218 30 1 -0.2601 -12.6466 -1.2455 31 1 -0.2071 -12.5780 1.3734 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000082692966.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:43:43 Heat of formation + Delta-G solvation = -25.895620 kcal Electronic energy + Delta-G solvation = -15325.154534 eV Core-core repulsion = 12506.640758 eV Total energy + Delta-G solvation = -2818.513776 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 255.072 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -42.91925 -39.44201 -35.11695 -33.29631 -33.12570 -31.22964 -29.28683 -28.46032 -25.78389 -23.06306 -22.10208 -20.92354 -20.67251 -18.07413 -16.89611 -16.71193 -16.30988 -15.83695 -15.62602 -15.03479 -14.57538 -14.29657 -13.82440 -13.44646 -13.17807 -12.99809 -12.69593 -12.48175 -12.29122 -12.18955 -11.80676 -10.83135 -10.73006 -10.30774 -10.03296 -9.91033 -9.57714 -9.24423 -8.89456 -8.76446 -8.59260 -6.63465 -6.18037 -4.21818 1.25088 2.17866 2.39847 2.61432 2.73466 3.30783 3.33169 3.37623 3.40121 3.86315 4.24788 4.37723 4.66869 4.69972 4.91134 5.08217 5.19344 5.34961 5.39853 5.44595 5.58974 5.61042 5.71611 6.11482 6.22018 6.77126 7.09456 7.10469 7.36276 7.77074 8.03011 8.23440 8.80152 9.41179 10.93492 Molecular weight = 255.07amu Principal moments of inertia in cm(-1) A = 0.064820 B = 0.003117 C = 0.003038 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 431.863703 B = 8980.344466 C = 9213.719260 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.065 3.935 3 Si 0.907 3.093 4 H -0.273 1.273 5 H -0.285 1.285 6 H -0.273 1.273 7 C -0.511 4.511 8 H 0.068 0.932 9 C 0.074 3.926 10 S -0.235 6.235 11 C -0.131 4.131 12 C 0.535 3.465 13 O -0.512 6.512 14 N -0.734 5.734 15 C 0.204 3.796 16 C -0.034 4.034 17 C -0.186 4.186 18 C -0.218 4.218 19 C -0.032 4.032 20 O -0.171 6.171 21 H 0.266 0.734 22 H 0.035 0.965 23 H 0.036 0.964 24 H 0.102 0.898 25 H 0.102 0.898 26 H 0.403 0.597 27 H 0.100 0.900 28 H 0.085 0.915 29 H 0.152 0.848 30 H 0.150 0.850 31 H 0.204 0.796 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.485 -22.793 -0.464 22.933 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.138 4.138 3 Si 0.734 3.266 4 H -0.199 1.199 5 H -0.211 1.211 6 H -0.199 1.199 7 C -0.550 4.550 8 H 0.086 0.914 9 C -0.073 4.073 10 S -0.009 6.009 11 C -0.281 4.281 12 C 0.321 3.679 13 O -0.386 6.386 14 N -0.389 5.389 15 C 0.081 3.919 16 C -0.084 4.084 17 C -0.206 4.206 18 C -0.237 4.237 19 C -0.100 4.100 20 O -0.067 6.067 21 H 0.075 0.925 22 H 0.054 0.946 23 H 0.054 0.946 24 H 0.120 0.880 25 H 0.120 0.880 26 H 0.238 0.762 27 H 0.118 0.882 28 H 0.103 0.897 29 H 0.169 0.831 30 H 0.168 0.832 31 H 0.221 0.779 Dipole moment (debyes) X Y Z Total from point charges -0.564 -22.491 -0.163 22.498 hybrid contribution -1.796 0.509 -0.205 1.878 sum -2.360 -21.982 -0.368 22.111 Atomic orbital electron populations 1.69941 1.06148 1.27425 1.49755 1.24956 0.94977 0.99266 0.94629 0.86399 0.79391 0.81767 0.79039 1.19864 1.21090 1.19857 1.20612 0.93511 0.88641 1.52245 0.91431 1.21168 0.94448 0.91586 1.00073 1.87247 1.17369 0.98313 1.97987 1.23355 1.02420 0.96108 1.06258 1.20032 0.88678 0.83699 0.75515 1.90742 1.14075 1.86443 1.47337 1.46016 1.10457 1.04664 1.77802 1.19549 0.90196 0.77642 1.04539 1.22356 1.03177 0.98414 0.84460 1.21743 1.01560 0.97588 0.99689 1.21893 1.04988 1.01971 0.94878 1.24144 0.97654 0.91970 0.96230 1.84063 1.51685 1.35972 1.34953 0.92474 0.94623 0.94618 0.87951 0.87976 0.76236 0.88225 0.89661 0.83064 0.83216 0.77906 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.03 13.29 55.43 0.74 -25.29 16 2 C 0.07 1.85 5.46 -17.82 -0.10 1.75 16 3 Si 0.91 21.57 29.54 -169.99 -5.02 16.54 16 4 H -0.27 -6.41 7.11 56.52 0.40 -6.01 16 5 H -0.29 -6.63 7.11 56.52 0.40 -6.22 16 6 H -0.27 -6.41 7.11 56.52 0.40 -6.01 16 7 C -0.51 -14.58 9.13 -34.44 -0.31 -14.89 16 8 H 0.07 1.94 7.71 -52.49 -0.40 1.53 16 9 C 0.07 1.94 5.70 36.01 0.21 2.14 16 10 S -0.23 -5.35 20.79 -107.50 -2.24 -7.58 16 11 C -0.13 -2.17 6.42 36.01 0.23 -1.94 16 12 C 0.54 8.47 7.85 -10.99 -0.09 8.38 16 13 O -0.51 -10.12 15.86 5.56 0.09 -10.03 16 14 N -0.73 -8.46 5.55 -61.47 -0.34 -8.80 16 15 C 0.20 2.13 6.20 -5.19 -0.03 2.09 16 16 C -0.03 -0.33 6.69 -35.62 -0.24 -0.56 16 17 C -0.19 -1.61 10.81 -39.70 -0.43 -2.03 16 18 C -0.22 -1.65 10.91 -39.71 -0.43 -2.08 16 19 C -0.03 -0.23 12.09 29.41 0.36 0.12 16 20 O -0.17 -1.70 10.65 5.68 0.06 -1.64 16 21 H 0.27 7.27 8.31 -40.82 -0.34 6.93 16 22 H 0.04 0.95 8.14 -51.92 -0.42 0.53 16 23 H 0.04 0.95 8.14 -51.93 -0.42 0.53 16 24 H 0.10 1.51 8.14 -51.92 -0.42 1.08 16 25 H 0.10 1.52 8.14 -51.92 -0.42 1.10 16 26 H 0.40 3.74 8.46 -40.82 -0.35 3.40 16 27 H 0.10 0.99 8.14 -51.93 -0.42 0.57 16 28 H 0.09 0.94 8.14 -51.93 -0.42 0.52 16 29 H 0.15 1.11 8.06 -52.49 -0.42 0.68 16 30 H 0.15 0.81 8.06 -52.48 -0.42 0.38 16 31 H 0.20 0.72 8.06 -52.48 -0.42 0.30 16 LS Contribution 295.77 15.07 4.46 4.46 Total: -1.00 -33.27 295.77 -6.78 -40.05 By element: Atomic # 1 Polarization: 2.99 SS G_CDS: -3.69 Total: -0.70 kcal Atomic # 6 Polarization: -6.18 SS G_CDS: -0.84 Total: -7.02 kcal Atomic # 7 Polarization: -34.49 SS G_CDS: 0.40 Total: -34.09 kcal Atomic # 8 Polarization: -11.81 SS G_CDS: 0.15 Total: -11.66 kcal Atomic # 14 Polarization: 21.57 SS G_CDS: -5.02 Total: 16.54 kcal Atomic # 16 Polarization: -5.35 SS G_CDS: -2.24 Total: -7.58 kcal Total LS contribution 4.46 Total: 4.46 kcal Total: -33.27 -6.78 -40.05 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082692966.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.156 kcal (2) G-P(sol) polarization free energy of solvation -33.268 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.112 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.784 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.052 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.896 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds