Wall clock time and date at job start Mon Mar 30 2020 04:14:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86801 * 119.99810 * 2 1 4 4 H 1.48494 * 109.46876 * 180.02562 * 3 2 1 5 5 H 1.48496 * 109.47096 * 300.00586 * 3 2 1 6 6 H 1.48503 * 109.46640 * 60.00691 * 3 2 1 7 7 C 1.37878 * 120.00221 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00396 * 179.97438 * 7 2 1 9 9 C 1.50706 * 119.99771 * 359.97438 * 7 2 1 10 10 S 1.81404 * 109.46707 * 180.02562 * 9 7 2 11 11 O 1.42094 * 109.47121 * 289.05287 * 10 9 7 12 12 C 1.76205 * 102.99511 * 179.97438 * 10 9 7 13 13 C 1.38238 * 120.00111 * 270.20921 * 12 10 9 14 14 C 1.38233 * 119.99747 * 180.26452 * 13 12 10 15 15 C 1.38234 * 120.00037 * 359.50225 * 14 13 12 16 16 N 1.48025 * 119.99960 * 180.26108 * 15 14 13 17 17 O 1.21793 * 119.99912 * 359.97438 * 16 15 14 18 18 O 1.21799 * 119.99930 * 180.02562 * 16 15 14 19 19 C 1.38235 * 120.00220 * 0.28719 * 15 14 13 20 20 C 1.38234 * 119.99800 * 89.99991 * 12 10 9 21 21 H 0.96994 * 119.99993 * 359.97438 * 1 2 3 22 22 H 1.08996 * 109.47045 * 60.00480 * 9 7 2 23 23 H 1.09004 * 109.46644 * 300.00046 * 9 7 2 24 24 H 1.07998 * 119.99820 * 0.03867 * 13 12 10 25 25 H 1.08002 * 120.00157 * 179.78843 * 14 13 12 26 26 H 1.08005 * 120.00199 * 179.97438 * 19 15 14 27 27 H 1.08001 * 120.00294 * 359.97438 * 20 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7090 1.3464 -0.0006 5 1 1.8902 2.3965 -1.2124 6 1 1.8904 2.3963 1.2126 7 6 2.0046 -1.1940 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 16 2.4300 -3.8779 -0.0005 11 8 3.0702 -3.9537 -1.2668 12 6 1.3826 -5.2949 0.0002 13 6 0.9686 -5.8478 1.1977 14 6 0.1513 -6.9626 1.1982 15 6 -0.2603 -7.5184 0.0014 16 7 -1.1402 -8.7088 0.0020 17 8 -1.5010 -9.1988 1.0570 18 8 -1.5025 -9.1989 -1.0526 19 6 0.1501 -6.9630 -1.1961 20 6 0.9713 -5.8510 -1.1966 21 1 -0.4850 0.8400 0.0004 22 1 0.6241 -2.5567 -0.8903 23 1 0.6247 -2.5570 0.8897 24 1 1.2866 -5.4108 2.1327 25 1 -0.1694 -7.3967 2.1337 26 1 -0.1712 -7.3975 -2.1312 27 1 1.2916 -5.4168 -2.1322 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000084264597.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:14:19 Heat of formation + Delta-G solvation = -42.804940 kcal Electronic energy + Delta-G solvation = -15720.588339 eV Core-core repulsion = 12765.508226 eV Total energy + Delta-G solvation = -2955.080113 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 255.040 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -43.37654 -40.33751 -37.79961 -36.78229 -35.24349 -33.21098 -32.48891 -30.68518 -27.84243 -25.27318 -24.27523 -23.64496 -20.50907 -19.87537 -19.40896 -18.74710 -18.52399 -17.34463 -16.73617 -16.58480 -16.01545 -15.46313 -14.96406 -14.65387 -14.49361 -14.28683 -14.07892 -13.25302 -12.91496 -12.86137 -12.69409 -12.58369 -12.43469 -12.39704 -12.24296 -11.62699 -11.16144 -10.85150 -10.69667 -10.45619 -9.27897 -8.31430 -6.45968 -1.46737 -0.12242 0.03227 0.20456 0.92465 1.40112 1.42962 1.55054 1.85144 2.24457 2.36672 2.92534 3.07692 3.27771 3.41695 3.87848 3.95727 4.16773 4.40962 4.58776 4.61801 4.89275 4.97076 5.05938 5.10827 5.37922 5.52774 5.90106 6.39653 6.69145 7.24661 8.80971 Molecular weight = 255.04amu Principal moments of inertia in cm(-1) A = 0.041388 B = 0.004656 C = 0.004492 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 676.355122 B = 6012.306471 C = 6231.217889 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.923 5.923 2 C 0.014 3.986 3 Si 0.962 3.038 4 H -0.255 1.255 5 H -0.288 1.288 6 H -0.267 1.267 7 C -0.538 4.538 8 H 0.073 0.927 9 C -0.275 4.275 10 S 1.384 4.616 11 O -0.916 6.916 12 C -0.415 4.415 13 C -0.028 4.028 14 C -0.062 4.062 15 C -0.037 4.037 16 N 0.028 4.972 17 O -0.145 6.145 18 O -0.197 6.197 19 C -0.077 4.077 20 C -0.077 4.077 21 H 0.267 0.733 22 H 0.001 0.999 23 H 0.081 0.919 24 H 0.214 0.786 25 H 0.190 0.810 26 H 0.157 0.843 27 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.682 -11.260 7.491 13.788 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.561 5.561 2 C -0.187 4.187 3 Si 0.786 3.214 4 H -0.179 1.179 5 H -0.214 1.214 6 H -0.192 1.192 7 C -0.576 4.576 8 H 0.091 0.909 9 C -0.414 4.414 10 S 1.584 4.416 11 O -0.912 6.912 12 C -0.510 4.510 13 C -0.047 4.047 14 C -0.081 4.081 15 C -0.120 4.120 16 N 0.546 4.454 17 O -0.367 6.367 18 O -0.404 6.404 19 C -0.097 4.097 20 C -0.097 4.097 21 H 0.076 0.924 22 H 0.020 0.980 23 H 0.099 0.901 24 H 0.230 0.770 25 H 0.207 0.793 26 H 0.175 0.825 27 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 3.943 -10.616 7.389 13.522 hybrid contribution -1.842 0.471 -2.495 3.137 sum 2.101 -10.145 4.894 11.458 Atomic orbital electron populations 1.70078 1.07855 1.28153 1.50061 1.25895 0.95719 1.03250 0.93878 0.85432 0.79537 0.78514 0.77920 1.17885 1.21418 1.19185 1.20939 0.93468 0.90355 1.52886 0.90856 1.25165 1.07032 1.07523 1.01640 1.68462 0.85634 0.80767 1.06761 1.92908 1.66296 1.84483 1.47543 1.28897 1.09340 1.15240 0.97541 1.21583 0.92234 0.92033 0.98841 1.21660 0.94441 0.94801 0.97232 1.21485 1.01300 0.90914 0.98313 1.43871 0.99605 1.01766 1.00193 1.94488 1.58265 1.63387 1.20533 1.94546 1.60306 1.64575 1.21011 1.21132 0.95642 0.95049 0.97882 1.21192 0.94782 0.94440 0.99266 0.92445 0.98047 0.90125 0.76959 0.79302 0.82543 0.85293 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -52.14 13.29 21.45 0.28 -51.86 15 2 C 0.01 0.72 5.46 84.65 0.46 1.18 15 3 Si 0.96 40.90 29.54 68.60 2.03 42.93 15 4 H -0.26 -10.23 7.11 99.48 0.71 -9.53 15 5 H -0.29 -12.45 7.11 99.48 0.71 -11.74 15 6 H -0.27 -10.75 7.11 99.48 0.71 -10.04 15 7 C -0.54 -27.39 9.13 25.60 0.23 -27.16 15 8 H 0.07 3.52 7.71 -2.91 -0.02 3.50 15 9 C -0.28 -12.36 5.64 71.24 0.40 -11.95 15 10 S 1.38 44.52 13.46 -56.49 -0.76 43.76 15 11 O -0.92 -40.65 16.90 -148.98 -2.52 -43.17 15 12 C -0.42 -11.33 5.61 22.27 0.12 -11.21 15 13 C -0.03 -0.51 9.75 22.27 0.22 -0.30 15 14 C -0.06 -1.19 9.56 22.27 0.21 -0.98 15 15 C -0.04 -0.96 6.85 36.37 0.25 -0.71 15 16 N 0.03 0.80 4.45 -46.46 -0.21 0.59 15 17 O -0.14 -3.94 18.45 18.90 0.35 -3.59 15 18 O -0.20 -6.07 18.45 18.89 0.35 -5.72 15 19 C -0.08 -2.11 9.56 22.27 0.21 -1.90 15 20 C -0.08 -2.36 9.44 22.27 0.21 -2.15 15 21 H 0.27 14.18 8.31 -92.71 -0.77 13.41 15 22 H 0.00 0.05 8.14 -2.39 -0.02 0.03 15 23 H 0.08 3.43 8.14 -2.39 -0.02 3.41 15 24 H 0.21 1.64 8.06 -2.91 -0.02 1.62 15 25 H 0.19 2.43 7.61 -2.91 -0.02 2.41 15 26 H 0.16 3.94 7.61 -2.91 -0.02 3.92 15 27 H 0.13 4.41 7.46 -2.91 -0.02 4.39 15 Total: -1.00 -73.91 269.90 3.05 -70.86 By element: Atomic # 1 Polarization: 0.18 SS G_CDS: 1.20 Total: 1.38 kcal Atomic # 6 Polarization: -57.50 SS G_CDS: 2.33 Total: -55.18 kcal Atomic # 7 Polarization: -51.34 SS G_CDS: 0.08 Total: -51.26 kcal Atomic # 8 Polarization: -50.66 SS G_CDS: -1.82 Total: -52.49 kcal Atomic # 14 Polarization: 40.90 SS G_CDS: 2.03 Total: 42.93 kcal Atomic # 16 Polarization: 44.52 SS G_CDS: -0.76 Total: 43.76 kcal Total: -73.91 3.05 -70.86 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084264597.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.054 kcal (2) G-P(sol) polarization free energy of solvation -73.906 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.852 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.047 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.859 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.805 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds