Wall clock time and date at job start Mon Mar 30 2020 05:00:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 O 1.42900 * 109.47357 * 2 1 4 4 C 1.35995 * 117.00209 * 180.02562 * 3 2 1 5 5 C 1.38721 * 119.98245 * 359.72233 * 4 3 2 6 6 C 1.38094 * 120.01903 * 179.72789 * 5 4 3 7 7 C 1.38877 * 119.97915 * 0.57512 * 6 5 4 8 8 N 1.39936 * 120.01872 * 179.72715 * 7 6 5 9 9 C 1.38847 * 119.96520 * 359.69904 * 7 6 5 10 10 S 1.76194 * 120.00923 * 179.97438 * 9 7 6 11 11 O 1.42105 * 102.99607 * 192.12842 * 10 9 7 12 12 C 1.76195 * 103.00254 * 85.25788 * 10 9 7 13 13 H 1.08005 * 119.99665 * 359.97438 * 12 10 9 14 14 C 1.37875 * 120.00430 * 179.97438 * 12 10 9 15 15 N 1.31514 * 119.99912 * 0.02562 * 14 12 10 16 16 Si 1.86803 * 120.00163 * 179.97438 * 14 12 10 17 17 H 1.48498 * 109.47010 * 90.00334 * 16 14 12 18 18 H 1.48502 * 109.47084 * 210.00215 * 16 14 12 19 19 H 1.48502 * 109.46933 * 330.00074 * 16 14 12 20 20 C 1.38133 * 119.97772 * 0.02562 * 9 7 6 21 21 H 1.09004 * 109.47133 * 180.02562 * 1 2 3 22 22 H 1.09008 * 109.46788 * 299.99572 * 1 2 3 23 23 H 1.09000 * 109.47394 * 60.00017 * 1 2 3 24 24 H 1.08999 * 109.47649 * 120.00469 * 2 1 3 25 25 H 1.09005 * 109.47060 * 239.99974 * 2 1 3 26 26 H 1.08001 * 119.98866 * 0.02562 * 5 4 3 27 27 H 1.07994 * 120.00551 * 180.25029 * 6 5 4 28 28 H 0.97007 * 120.00231 * 185.70091 * 8 7 6 29 29 H 0.96996 * 119.99931 * 5.69337 * 8 7 6 30 30 H 0.96999 * 120.00329 * 179.97438 * 15 14 12 31 31 H 1.07993 * 119.99123 * 179.97438 * 20 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.3546 1.5254 -0.0005 5 6 4.1993 0.4251 0.0048 6 6 5.5684 0.6051 -0.0015 7 6 6.0996 1.8882 -0.0010 8 7 7.4869 2.0716 -0.0015 9 6 5.2535 2.9891 -0.0005 10 16 5.9262 4.6176 0.0008 11 8 4.7969 5.4296 0.2919 12 6 6.2093 4.9309 -1.7098 13 1 5.9647 4.1779 -2.4444 14 6 6.7432 6.1373 -2.1106 15 7 7.0416 7.0540 -1.2160 16 14 7.0440 6.4692 -3.9241 17 1 5.8339 7.0892 -4.5212 18 1 8.1980 7.3917 -4.0738 19 1 7.3392 5.1904 -4.6190 20 6 3.8842 2.8072 0.0000 21 1 -0.3633 -1.0277 0.0005 22 1 -0.3633 0.5138 0.8901 23 1 -0.3634 0.5138 -0.8900 24 1 1.8934 -0.5139 0.8899 25 1 1.8933 -0.5139 -0.8900 26 1 3.7860 -0.5727 0.0089 27 1 6.2258 -0.2517 -0.0014 28 1 7.8583 2.9639 0.0823 29 1 8.0772 1.3066 -0.0855 30 1 7.4175 7.9026 -1.4979 31 1 3.2259 3.6633 0.0007 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000088063051.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:00:18 Heat of formation + Delta-G solvation = -95.804703 kcal Electronic energy + Delta-G solvation = -16480.891461 eV Core-core repulsion = 13659.346200 eV Total energy + Delta-G solvation = -2821.545261 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 255.072 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.92644 -38.74267 -35.99289 -34.94786 -34.64311 -32.45935 -31.74353 -28.49386 -27.87826 -25.00107 -23.32000 -22.50862 -20.18299 -19.26097 -17.95052 -17.70481 -17.37289 -16.95533 -16.81039 -15.96283 -15.40428 -15.27585 -14.73288 -14.36018 -14.32088 -13.77112 -13.55576 -13.33099 -13.28857 -13.08531 -12.98744 -12.76425 -12.52310 -12.13014 -11.89764 -11.74772 -11.08672 -10.68199 -10.53391 -10.03783 -9.07775 -8.44508 -8.01676 -6.95494 0.22207 0.74041 1.29828 1.33660 1.45428 1.93067 2.31413 2.44932 2.74922 2.83705 3.18004 3.53817 3.90633 4.02960 4.06881 4.09536 4.20577 4.37822 4.52382 4.67944 4.81422 4.92641 5.06221 5.17695 5.20625 5.39134 5.41669 5.45333 5.75884 6.11587 6.56059 6.75738 6.99371 7.24161 8.43423 Molecular weight = 255.07amu Principal moments of inertia in cm(-1) A = 0.025999 B = 0.006240 C = 0.005836 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1076.716131 B = 4485.896088 C = 4796.901589 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.044 3.956 3 O -0.352 6.352 4 C 0.036 3.964 5 C -0.132 4.132 6 C -0.169 4.169 7 C 0.250 3.750 8 N -0.858 5.858 9 C -0.509 4.509 10 S 1.441 4.559 11 O -0.984 6.984 12 C -0.844 4.844 13 H 0.068 0.932 14 C 0.072 3.928 15 N -0.893 5.893 16 Si 0.967 3.033 17 H -0.286 1.286 18 H -0.252 1.252 19 H -0.256 1.256 20 C -0.082 4.082 21 H 0.108 0.892 22 H 0.058 0.942 23 H 0.054 0.946 24 H 0.074 0.926 25 H 0.070 0.930 26 H 0.162 0.838 27 H 0.169 0.831 28 H 0.404 0.596 29 H 0.416 0.584 30 H 0.289 0.711 31 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.468 -17.235 2.311 17.451 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.031 4.031 3 O -0.268 6.268 4 C -0.011 4.011 5 C -0.151 4.151 6 C -0.192 4.192 7 C 0.142 3.858 8 N -0.400 5.400 9 C -0.608 4.608 10 S 1.643 4.357 11 O -0.979 6.979 12 C -0.984 4.984 13 H 0.086 0.914 14 C -0.138 4.138 15 N -0.527 5.527 16 Si 0.789 3.211 17 H -0.212 1.212 18 H -0.176 1.176 19 H -0.180 1.180 20 C -0.102 4.102 21 H 0.127 0.873 22 H 0.077 0.923 23 H 0.074 0.926 24 H 0.093 0.907 25 H 0.088 0.912 26 H 0.180 0.820 27 H 0.186 0.814 28 H 0.235 0.765 29 H 0.248 0.752 30 H 0.099 0.901 31 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 1.517 -16.349 3.175 16.723 hybrid contribution -1.762 0.514 -2.277 2.925 sum -0.245 -15.835 0.898 15.862 Atomic orbital electron populations 1.21812 0.91823 1.04261 1.02666 1.23046 0.96765 0.81025 1.02223 1.86047 1.19137 1.31369 1.90218 1.18884 0.82912 0.93908 1.05346 1.21352 0.93760 0.97793 1.02193 1.20897 0.95016 0.95639 1.07696 1.17255 0.85043 0.91906 0.91597 1.42496 1.01690 1.12809 1.83010 1.27838 0.98421 1.18838 1.15733 1.66281 1.02262 0.76085 0.91104 1.92707 1.55056 1.65451 1.84680 1.27760 1.51030 1.06950 1.12619 0.91392 1.25624 0.90794 0.93625 1.03763 1.69898 1.38777 1.07262 1.36779 0.85468 0.78355 0.79259 0.78024 1.21217 1.17552 1.17991 1.19990 0.94626 0.94849 1.00756 0.87339 0.92319 0.92640 0.90740 0.91224 0.82047 0.81350 0.76541 0.75223 0.90081 0.90084 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.87 10.28 71.98 0.74 -2.13 16 2 C 0.04 1.05 5.46 71.98 0.39 1.44 16 3 O -0.35 -13.13 10.14 -93.49 -0.95 -14.08 16 4 C 0.04 1.45 6.69 22.49 0.15 1.60 16 5 C -0.13 -3.98 9.03 22.35 0.20 -3.78 16 6 C -0.17 -4.79 9.89 22.39 0.22 -4.57 16 7 C 0.25 8.69 6.74 38.15 0.26 8.95 16 8 N -0.86 -22.52 9.02 -51.27 -0.46 -22.98 16 9 C -0.51 -23.44 5.62 22.39 0.13 -23.31 16 10 S 1.44 75.09 11.90 -56.49 -0.67 74.41 16 11 O -0.98 -65.42 16.39 -148.98 -2.44 -67.86 16 12 C -0.84 -47.94 9.34 67.73 0.63 -47.30 16 13 H 0.07 3.89 7.81 -2.91 -0.02 3.87 16 14 C 0.07 3.96 5.46 84.65 0.46 4.43 16 15 N -0.89 -50.65 13.19 21.45 0.28 -50.36 16 16 Si 0.97 42.84 29.54 68.60 2.03 44.87 16 17 H -0.29 -13.15 7.11 99.48 0.71 -12.44 16 18 H -0.25 -10.03 7.11 99.48 0.71 -9.32 16 19 H -0.26 -10.81 7.11 99.48 0.71 -10.11 16 20 C -0.08 -4.05 9.39 22.35 0.21 -3.84 16 21 H 0.11 1.32 8.14 -2.38 -0.02 1.30 16 22 H 0.06 1.20 8.14 -2.38 -0.02 1.18 16 23 H 0.05 1.17 8.14 -2.39 -0.02 1.15 16 24 H 0.07 1.48 7.65 -2.39 -0.02 1.46 16 25 H 0.07 1.44 7.67 -2.38 -0.02 1.42 16 26 H 0.16 3.43 6.29 -2.91 -0.02 3.41 16 27 H 0.17 3.09 8.06 -2.91 -0.02 3.07 16 28 H 0.40 10.93 7.36 -92.70 -0.68 10.25 16 29 H 0.42 7.20 8.85 -92.71 -0.82 6.38 16 30 H 0.29 14.96 8.31 -92.71 -0.77 14.18 16 31 H 0.08 4.70 7.22 -2.91 -0.02 4.68 16 Total: -1.00 -84.87 283.06 0.85 -84.02 By element: Atomic # 1 Polarization: 20.81 SS G_CDS: -0.33 Total: 20.48 kcal Atomic # 6 Polarization: -71.90 SS G_CDS: 3.40 Total: -68.50 kcal Atomic # 7 Polarization: -73.16 SS G_CDS: -0.18 Total: -73.34 kcal Atomic # 8 Polarization: -78.55 SS G_CDS: -3.39 Total: -81.94 kcal Atomic # 14 Polarization: 42.84 SS G_CDS: 2.03 Total: 44.87 kcal Atomic # 16 Polarization: 75.09 SS G_CDS: -0.67 Total: 74.41 kcal Total: -84.87 0.85 -84.02 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000088063051.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.784 kcal (2) G-P(sol) polarization free energy of solvation -84.869 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.653 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.848 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.021 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.805 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds